RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15292
(132 letters)
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 78.1 bits (193), Expect = 1e-18
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
+ ++ VHP Y+PS + ND+AL+K+ + V ++ P+CLP L G + TV+GW
Sbjct: 70 VIKVKKVIVHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGW 129
Query: 62 GRTRHASSLSS 72
GRT L
Sbjct: 130 GRTSEGGPLPD 140
Score = 60.0 bits (146), Expect = 6e-12
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTR 125
+ ND+AL+K+ + V ++ P+CLP L G + TV+GWGRT
Sbjct: 86 TYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTS 133
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 73.1 bits (180), Expect = 8e-17
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
+ + +HP Y+PS + ND+AL+K+ + V ++ P+CLP + G + TV+GW
Sbjct: 70 VIKVSKVIIHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGW 129
Query: 62 GRTRHASSLSSAIPTYVSI 80
GRT + V++
Sbjct: 130 GRTSEGAGSLPDTLQEVNV 148
Score = 56.9 bits (138), Expect = 9e-11
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTR 125
+ ND+AL+K+ + V ++ P+CLP + G + TV+GWGRT
Sbjct: 86 TYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTS 133
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 59.4 bits (144), Expect = 8e-12
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 3 KLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
K + ++ VHP Y+P ND+AL+K+ V + P+CLP + L VG + TV+GW
Sbjct: 68 KFDVKKVIVHPNYNPDTD-NDIALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGW 126
Query: 62 GRTRH 66
G T+
Sbjct: 127 GNTKT 131
Score = 51.7 bits (124), Expect = 6e-09
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAGHKE 131
ND+AL+K+ V + P+CLP + L VG + TV+GWG T+ G +
Sbjct: 86 NDIALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGLPD 136
>gnl|CDD|188991 cd09592, SAM_DLC2, SAM domain of STARD13-like subfamily. SAM
(sterile alpha motif) domain of DLC2 (Deleted in liver
cancer) protein is a lipid-binding and putative
protein-protein interaction domain located at the
N-terminus of the protein. Members of this subfamily do
not form dimers/oligomers through their SAM domains.
They participate in lipid transfer. Human Dlc2 gene is
known as a tumor suppressor gene. It was found
underexpressed in hepatocellular carcinoma.
Length = 64
Score = 27.3 bits (60), Expect = 0.70
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 13 PQYSP----SDFRNDVALIKIDKDVVFKQHIIPVC 43
PQY+ S F D+A +K D D + + + P+C
Sbjct: 17 PQYAQLYEDSQFPIDIASVKRDHDFLDRDLVEPLC 51
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase.
Length = 565
Score = 26.9 bits (59), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 45 PDQTVKLVGKSATVAGWGRTRHASS 69
D+ + VGK+ V GW RT A S
Sbjct: 99 EDEGLARVGKTLNVMGWVRTLRAQS 123
Score = 26.1 bits (57), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 105 PDQTVKLVGKSATVAGWGRT 124
D+ + VGK+ V GW RT
Sbjct: 99 EDEGLARVGKTLNVMGWVRT 118
>gnl|CDD|204114 pfam09009, Exotox-A_cataly, Exotoxin A catalytic. Members of this
family, which are found in prokaryotic exotoxin A,
catalyze the transfer of ADP ribose from nicotinamide
adenine dinucleotide (NAD) to elongation factor-2 in
eukaryotic cells, with subsequent inhibition of protein
synthesis.
Length = 212
Score = 26.6 bits (58), Expect = 4.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPT 76
G+ T+ GW HA ++ SAIP
Sbjct: 162 GEDETIIGWDLAEHAVAIPSAIPG 185
>gnl|CDD|233646 TIGR01936, nqrA, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, A subunit. This model represents
the NqrA subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 447
Score = 25.9 bits (57), Expect = 7.1
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 11 VHPQYSPSDFRNDVALIKIDKDVVFK---QHIIPV--------CLPDQTVKLVGKSATVA 59
HP P + +A I K VV+ Q +I + L ++ + L G +
Sbjct: 213 PHPAGLPGTHIHFIAPIGNGK-VVWTLNYQDVIAIGHLFLTGELLTERVIALAGPAVKKP 271
Query: 60 GWGRTRHASSLSSAIPTYVSISNDVALI 87
+ RT ++LS P ++ + LI
Sbjct: 272 RYVRTTKGANLSQLFPGELTSEGENRLI 299
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 25.6 bits (57), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 SDFRNDVALIKIDKD 32
D R D+A++KID
Sbjct: 101 KDPRTDIAVLKIDAK 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,365,727
Number of extensions: 530968
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 19
Length of query: 132
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 46
Effective length of database: 7,123,158
Effective search space: 327665268
Effective search space used: 327665268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)