RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15292
(132 letters)
>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo
salar) [TaxId: 8030]}
Length = 222
Score = 40.0 bits (92), Expect = 2e-05
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MFKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAG 60
+++ + HP YS + ND+ LIK+ K ++ PV LP G TV+G
Sbjct: 62 EQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSG 120
Query: 61 WGRTRH 66
WG T
Sbjct: 121 WGNTMS 126
Score = 34.2 bits (77), Expect = 0.002
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 77 YVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRH 126
+I ND+ LIK+ K ++ PV LP G TV+GWG T
Sbjct: 78 SYNIDNDIMLIKLSKPATLNTYVQPVALPTSCAP-AGTMCTVSGWGNTMS 126
>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish
(Pontastacus leptodactylus) [TaxId: 6717]}
Length = 237
Score = 39.3 bits (90), Expect = 5e-05
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
+H + + ND++L+K+ + F ++ P+ LP+Q G V GWG T +
Sbjct: 83 ILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGD-VIVTGWGTTSEGGN 141
Query: 70 LSS 72
Sbjct: 142 TPD 144
Score = 30.8 bits (68), Expect = 0.034
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 76 TYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAGH 129
Y + ND++L+K+ + F ++ P+ LP+Q G V GWG T G+
Sbjct: 89 DYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGD-VIVTGWGTTSEGGN 141
>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 228
Score = 37.0 bits (84), Expect = 2e-04
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 1 MFKLNTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAG 60
N H D+ ND+ L+++ K + P+ LP + K +G + +G
Sbjct: 65 HPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPK-LGSTCLASG 123
Query: 61 WGRTRHASSLSSAIPTYVSI 80
WG T V++
Sbjct: 124 WGSTTPIKFKYPDDLQCVNL 143
Score = 26.2 bits (56), Expect = 1.3
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGW 121
SND+ L+++ K + P+ LP + K +G + +GW
Sbjct: 83 DYSNDLMLLRLSKPADITDVVKPITLPTEEPK-LGSTCLASGW 124
>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 223
Score = 36.5 bits (83), Expect = 3e-04
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
HP + + ND+ LIK+ V + V LP G ++GWG T +
Sbjct: 71 IKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAP-AGTQCLISGWGNTLSSGV 129
Query: 70 LSSAIPTYVSI 80
+ +
Sbjct: 130 NEPDLLQCLDA 140
>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter
lyticus, strain m497-1 [TaxId: 224]}
Length = 263
Score = 36.1 bits (82), Expect = 5e-04
Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 1/79 (1%)
Query: 5 NTRQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPD-QTVKLVGKSATVAGWGR 63
NT S + S S ++ + F + + G +
Sbjct: 84 NTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFWAGWDRRDQNYPG 143
Query: 64 TRHASSLSSAIPTYVSISN 82
+ A + ++
Sbjct: 144 AIAIHHPNVAEKRISNSTS 162
>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 235
Score = 32.7 bits (73), Expect = 0.007
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 8 QSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 66
Q ++P Y+ ND+A++ ++ V + +I P+CLP++ G+ ++AGWG +
Sbjct: 77 QIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIY 136
Query: 67 ASS 69
S
Sbjct: 137 QGS 139
Score = 30.4 bits (67), Expect = 0.052
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAGH 129
+ND+A++ ++ V + +I P+CLP++ G+ ++AGWG + G
Sbjct: 88 RKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGS 139
>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 251
Score = 32.0 bits (71), Expect = 0.012
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS-ATVAGWGRTRHAS 68
FVH +++ RND+ALIK+ + V I CLP + L V GWGR
Sbjct: 92 FVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNG 151
Query: 69 SLS 71
++
Sbjct: 152 PIA 154
Score = 26.6 bits (57), Expect = 0.96
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 77 YVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKS-ATVAGWGRTRHAGH 129
+ ND+ALIK+ + V I CLP + L V GWGR G
Sbjct: 99 SFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGP 152
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius
[TaxId: 1400]}
Length = 215
Score = 32.0 bits (71), Expect = 0.013
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 7/111 (6%)
Query: 12 HPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLS 71
+ + D A+IK D ++ + G + ++G+ + S+
Sbjct: 86 SGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVTNL---TGTTIKISGYPGDKMRSTGK 142
Query: 72 SAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWG 122
+ + + DQ ++VG V G
Sbjct: 143 VSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAMLDQNQQIVG----VHNAG 189
Score = 27.8 bits (60), Expect = 0.35
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 82 NDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHAG 128
D A+IK D ++ + G + ++G+ +
Sbjct: 96 YDFAVIKTDTNIGNTVGYRSIRQVTNLT---GTTIKISGYPGDKMRS 139
>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId:
9606]}
Length = 287
Score = 31.2 bits (69), Expect = 0.031
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 1 MFKLNTRQSFVHPQYS---------PSDFRNDVALIKIDKDVVFKQHIIPVCLP--DQTV 49
L HP Y+ P + DVALIK+ + + Q I P+CLP + T
Sbjct: 68 KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTT 127
Query: 50 KLVGKSATVAGWGRTRHASSLSSAIPTYVSISNDV 84
+ + T + +VS
Sbjct: 128 RALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKK 162
Score = 26.6 bits (57), Expect = 0.96
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQ------TVKLVGKSATVAGWGRTRHAGHK 130
DVALIK+ + + Q I P+CLP + K
Sbjct: 95 FYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 152
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 30.4 bits (67), Expect = 0.046
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVG-KSATVAGWGRTRH 66
HP ++ F D+AL++++K + + P+CLPD + K+ V GWG T++
Sbjct: 84 ISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY 141
>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}
Length = 224
Score = 29.3 bits (64), Expect = 0.099
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 7 RQSFVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGW 61
R+ HP Y+ ND+ L+K+ + + P+ LP ++ G +VAGW
Sbjct: 72 RRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGW 127
>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 29.0 bits (63), Expect = 0.13
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQ 47
H +++ + D+A++++ + F+ ++ P CLP++
Sbjct: 75 IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPER 112
Score = 24.3 bits (51), Expect = 6.4
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 77 YVSISNDVALIKIDKDVVFKQHIIPVCLPDQ----TVKLVGKSATVAGWGRTRHAGH 129
+ D+A++++ + F+ ++ P CLP++ + + K+ V+G+GRT G
Sbjct: 82 KETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGR 138
>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 227
Score = 28.9 bits (63), Expect = 0.15
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRHAS 68
HP Y+ ND+ L+K+ + P+ LP + VK+ G VAGWG+
Sbjct: 76 IPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMG 135
Query: 69 SLS 71
S
Sbjct: 136 KYS 138
Score = 24.3 bits (51), Expect = 6.2
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 79 SISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL-VGKSATVAGWGRTRH 126
+ISND+ L+K+ + P+ LP + VK+ G VAGWG+
Sbjct: 85 TISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGP 133
>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase,
C-terminal domain {Bacillus stearothermophilus,
maltogenic alpha-amylase [TaxId: 1422]}
Length = 110
Score = 26.1 bits (57), Expect = 0.84
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 33 VVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKID 90
VVF P + L G + W T + ++++A ++ +
Sbjct: 8 VVFTVKSAPPTNLGDKIYLTGNIPELGNW-STDTSGAVNNAQGPLLAPNYPDWFYVFS 64
Score = 23.4 bits (50), Expect = 7.7
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 93 VVFKQHIIPVCLPDQTVKLVGKSATVAGW 121
VVF P + L G + W
Sbjct: 8 VVFTVKSAPPTNLGDKIYLTGNIPELGNW 36
>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 26.6 bits (58), Expect = 1.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 53 GKSATVAGWGRTRHASSLSSAIPT 76
G+ T+ GW + SAIPT
Sbjct: 156 GRLETILGWPLAERTVVIPSAIPT 179
>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein)
{Horse (Equus caballus) [TaxId: 9796]}
Length = 237
Score = 25.0 bits (53), Expect = 3.4
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 10 FVHPQYSPSDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGWGRTRHASS 69
D +D+ L+++ + + + LP Q K +G + +GWG ++
Sbjct: 83 KKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPK-LGSTCYTSGWGLISTFTN 141
Query: 70 LSSAIPTYVSI 80
S V +
Sbjct: 142 RGSGTLQCVEL 152
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 24.1 bits (52), Expect = 6.4
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 26 LIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATV 58
++ +F P C ++ +++
Sbjct: 236 WFEMADKDLFAAARFPECPEGSSISAPSQTSVD 268
Score = 24.1 bits (52), Expect = 6.4
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 86 LIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATV 118
++ +F P C ++ +++
Sbjct: 236 WFEMADKDLFAAARFPECPEGSSISAPSQTSVD 268
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 24.1 bits (51), Expect = 6.8
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 52 VGKSATVAGWGRTRHASSLSSAIPTYVSISNDVALIKIDKDVVFKQHIIPVCLPDQTVKL 111
G A G + + P ND A + + + + V V +
Sbjct: 37 CGTVNATARIGGAVVGTFAARVFPG-----NDRAWVSLTSA---QTLLPRVANGSSFVTV 88
Query: 112 VGKSATVAGW 121
G + G
Sbjct: 89 RGSTEAAVGA 98
Score = 24.1 bits (51), Expect = 7.1
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 18 SDFRNDVALIKIDKDVVFKQHIIPVCLPDQTVKLVGKSATVAGW 61
ND A + + + + V V + G + G
Sbjct: 58 VFPGNDRAWVSLTSA---QTLLPRVANGSSFVTVRGSTEAAVGA 98
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 184
Score = 23.7 bits (50), Expect = 8.2
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 75 PTYVSISNDVALIKIDKDVVFK 96
+ + D A ++ID D +
Sbjct: 156 VAVLEVPGDFAKVEIDNDQWYS 177
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0385 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,982
Number of extensions: 18195
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 33
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.2 bits)