Query psy15301
Match_columns 947
No_of_seqs 111 out of 328
Neff 1.5
Searched_HMMs 29240
Date Fri Aug 16 17:35:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fl0_A Endothelial-monocyte ac 99.9 4.3E-27 1.5E-31 222.1 5.4 124 143-269 20-165 (171)
2 1ntg_A Tyrrs, tyrosyl-tRNA syn 99.9 1.7E-26 5.7E-31 218.1 6.3 122 142-267 23-170 (172)
3 2e8g_A Hypothetical protein PH 98.5 9.3E-09 3.2E-13 102.4 -1.8 83 142-230 149-240 (241)
4 3ers_X TRNA-binding protein YG 98.1 3.8E-07 1.3E-11 82.2 -0.4 72 136-210 9-114 (118)
5 1pxf_A Hypothetical protein YG 97.6 9.4E-06 3.2E-10 72.1 -0.4 67 136-205 9-109 (111)
6 3g48_A Chaperone CSAA; structu 97.5 5.5E-06 1.9E-10 74.0 -2.0 67 136-205 10-111 (112)
7 1pyb_A Methionyl-tRNA syntheta 97.4 2E-05 7E-10 69.9 -0.1 62 142-205 28-110 (111)
8 1mkh_A Metrs;, C-terminal doma 97.4 4.9E-05 1.7E-09 67.1 1.5 62 142-205 24-106 (107)
9 2cwp_A Metrs related protein; 97.3 8.8E-05 3E-09 66.0 2.3 62 142-205 28-111 (112)
10 1gd7_A CSAA protein; oligonucl 97.2 5.3E-05 1.8E-09 67.2 0.3 57 142-200 23-96 (109)
11 2nzh_A Protein CSAA; beta barr 96.9 9.5E-05 3.3E-09 65.9 -0.9 62 142-205 26-112 (113)
12 2q2i_A AGR_C_4014P, secretion 96.7 0.00016 5.4E-09 64.7 -1.0 57 142-200 29-103 (116)
13 2q2h_A AGR_C_4014P, secretion 96.6 0.00022 7.5E-09 65.4 -1.0 64 135-200 27-118 (131)
14 1rqg_A Methionyl-tRNA syntheta 96.5 0.00044 1.5E-08 75.7 0.0 66 133-200 620-709 (722)
15 3bu2_A Putative tRNA-binding p 95.7 0.0015 5E-08 63.8 -0.8 51 142-192 104-170 (199)
16 1b7y_B Phers, protein (phenyla 71.2 0.57 1.9E-05 52.6 -1.3 49 142-192 56-121 (785)
17 3pco_B Phenylalanyl-tRNA synth 67.3 0.81 2.8E-05 51.5 -1.2 52 141-192 55-123 (795)
18 2rhq_B Phenylalanyl-tRNA synth 59.4 1.5 5.1E-05 49.1 -0.9 44 149-192 61-119 (795)
No 1
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=99.93 E-value=4.3e-27 Score=222.13 Aligned_cols=124 Identities=28% Similarity=0.376 Sum_probs=107.3
Q ss_pred cCCccc--cccCCCC-CcccccchhHHHhhhhhhcccceEe------------EEecceeeeeccCCCceeee-------
Q psy15301 143 PTRKSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSGLVL------------VSLSTGDLDCGVLDARWEGK------- 200 (947)
Q Consensus 143 ptrksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G~lr------------GIKSqGMVLCASNADhVELL------- 200 (947)
|..|++ -.|+.|+ -++.++.|++.|. ..|...|++. ||+|+||||||..+++++++
T Consensus 20 P~AdkL~v~~VD~G~~~~rqIV~G~~n~v--~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs~~~~~~~il~~~~~~~ 97 (171)
T 1fl0_A 20 PDADSLYVEEVDVGEIAPRTVVSGLVNHV--PLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSV 97 (171)
T ss_dssp TTEEEEEEEEEECSSSSCEEEEECCTTTS--CGGGGTTEEEEEECCSCCEESSSCEECCEECEEEETTEEEECBCCTTCC
T ss_pred CCCCccEEEEEEcCCCcEEEEEECCCceE--cchhcCCEEEcCceEEeeEEEccEeccCEEEEEecCCCEEEEECCCCCC
Confidence 333555 6789998 4899999999883 4466666554 59999999999998888887
Q ss_pred ccceEEEcCCCCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCCceeccc
Q psy15301 201 CQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSE 269 (947)
Q Consensus 201 PGERVfFEGFEGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKNA~Iyse 269 (947)
+|+||+|+||+++|+++||||||+||++||+|+|+++|+|+|||.||++.++ |+|++++|+||.|--|
T Consensus 98 ~G~~v~~~g~~~~p~~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~-g~~~~~~l~~~~~~~~ 165 (171)
T 1fl0_A 98 PGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGK-GVCRAQTMSNSGIKLE 165 (171)
T ss_dssp TTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTT-EECBCSSCCSCEECC-
T ss_pred CCCEEEeCCCCCCCccccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCC-ccEEeeecCCCeEeee
Confidence 8999999999999999999999999999999999999999999999988754 9999999999988543
No 2
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=99.93 E-value=1.7e-26 Score=218.07 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=104.7
Q ss_pred ccCCccc--cccCCCC-CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC---ceeee---
Q psy15301 142 FPTRKSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA---RWEGK--- 200 (947)
Q Consensus 142 ~ptrksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD---hVELL--- 200 (947)
||..+++ -.++.|+ -++.++.|++.|... ++.. ++++||+|+||||||..++ .|+|+
T Consensus 23 hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~--eel~G~~Vvvl~nlkp~klrGv~S~GMvLcs~~e~~~~~v~il~~~ 100 (172)
T 1ntg_A 23 HPDADSLYVEKIDVGEAEPRTVVSGLVQFVPK--EELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPP 100 (172)
T ss_dssp CTTCSSCEEEEEECSSSSCEEEEESCTTTSCG--GGTTTCEEEEECCBCCEEETTEEECCEECEEEEESSSEEEEECBCC
T ss_pred CCCCCccEEEEEEeCCCcEEEEEECCCCCCCh--HHHCCCEEEEEEeEcceeecceecCCEEeEecccccCCCeEEEECC
Confidence 3444666 6788997 589999999987522 3333 3678899999999998876 57787
Q ss_pred ----ccceEEEcCC-CCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCCceec
Q psy15301 201 ----CQRRWKLHGY-TRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNF 267 (947)
Q Consensus 201 ----PGERVfFEGF-EGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKNA~Iy 267 (947)
+|+||+|+|| +++|+++||||||+||++||+|+||++|+|+|+|.||+|+ +|+|++++|+|+.|-
T Consensus 101 ~~~~~G~~v~~~g~~~~~p~~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~--~g~~~~~~l~~~~i~ 170 (172)
T 1ntg_A 101 AGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK--LGSISCKSLKGGNIS 170 (172)
T ss_dssp BTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEET--TEECBCSSCTTCEEE
T ss_pred CCCCCCCEEEeCCcCCCCCccccCcchhhHHhhCCCcEECCCCEEEECCEEEEeC--CCCEEeeecCCCEEE
Confidence 8999999999 7999999999999999999999999999999999999997 499999999999984
No 3
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=98.48 E-value=9.3e-09 Score=102.43 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=59.4
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHhh---hhhhcc-cceEeEEecceeeeeccCCCceeee---ccceEEEcCCCC
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFAG---FVLAGF-SGLVLVSLSTGDLDCGVLDARWEGK---CQRRWKLHGYTR 212 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~---~V~a~~-~G~lrGIKSqGMVLCASNADhVELL---PGERVfFEGFEG 212 (947)
||..+++ -.|+.|.-.+.++.|++.|.- .|.|-+ .++++||.|+|||+||+. .+. .|+.+.|+ ++
T Consensus 149 hP~AdKL~v~~VD~G~~~rqIV~Ga~n~~~G~vVvVAnLpp~klrGv~SeGMlcsa~E----gl~~~~~G~I~~Lp--~~ 222 (241)
T 2e8g_A 149 HPSADRLLVTNVNIGERAVTVVTNDLTVKEGNRVAVALLPPRNFFGIVSEGMFLGAGE----GVLKNVKGEIGGLP--KG 222 (241)
T ss_dssp CTTCTTCEEEEEECSSCEEEEEESCTTCCTTCEEEEECCCCEEETTEEECCEECEETT----EECCBCBSCTTSCC--BS
T ss_pred CCCCCccEEEEEEeCCceEEEEECCccccCCCEEEEEECCCcccCCcccCcEEeECcc----CCCCCCCCcEEECC--CC
Confidence 5555677 678898877889998876421 011111 478999999999999974 333 45433332 48
Q ss_pred CCCCCCCcchhhHhhhcC
Q psy15301 213 NPDPVLNPKKKIFETVAP 230 (947)
Q Consensus 213 EPDpVLNPKKKIWEKVQP 230 (947)
.|+++||||||+||+++.
T Consensus 223 ~p~~~lnpkkk~~e~~~~ 240 (241)
T 2e8g_A 223 IPLEALNETRNAVEAFLK 240 (241)
T ss_dssp CCGGGGHHHHHHHHHHHC
T ss_pred CchhhcCchhhHHHHHhc
Confidence 999999999999999974
No 4
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=98.08 E-value=3.8e-07 Score=82.17 Aligned_cols=72 Identities=11% Similarity=-0.037 Sum_probs=51.3
Q ss_pred ccccccccCC----------ccc--cccCCCCCcccccchhHHHhh-------------hhhhcccceEeEEecceeeee
Q psy15301 136 LEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAG-------------FVLAGFSGLVLVSLSTGDLDC 190 (947)
Q Consensus 136 lSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~-------------~V~a~~~G~lrGIKSqGMVLC 190 (947)
|+.++|+++. +++ -.|+.|+-.+-+..|++.+.. +++ ..+++|+.|+|||||
T Consensus 9 F~kvdirVG~I~~~e~hp~AdKL~~~~VD~G~~~~~iv~g~~~~y~pe~LvGk~v~~v~Nlk---p~kirGv~S~GMll~ 85 (118)
T 3ers_X 9 FARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQ---KAKMRGETSECMLLC 85 (118)
T ss_dssp HHTSCEEEEEEEEEECCTTCSSCEEEEEECSSSEEEEEECCTTTSCHHHHTTCEEEEECCSC---CEEETTEEECCEECE
T ss_pred ceeeeEEEEEEEEEEEcCCCCCcEEEEEEcCCcEeeEEEEeehhcCHhHhcCCEEEeecccc---cceECCeeceEEEEE
Confidence 5566666655 666 678899866677777766543 222 247889999999999
Q ss_pred ccCCCc--eeee-------ccceEEEcCC
Q psy15301 191 GVLDAR--WEGK-------CQRRWKLHGY 210 (947)
Q Consensus 191 ASNADh--VELL-------PGERVfFEGF 210 (947)
|+.+++ +.|+ +|+||+||-.
T Consensus 86 a~~~d~~~~~ll~p~~~~~~G~rv~~e~~ 114 (118)
T 3ers_X 86 AETDDGSESVLLTPERMMPAGVRVVLDHH 114 (118)
T ss_dssp EECTTSSCEEECCCSSCCCTTCBCCCC--
T ss_pred EEcCCCCcEEEEcCCCCCCCCCEEEEeee
Confidence 998875 5555 7999999853
No 5
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=97.56 E-value=9.4e-06 Score=72.15 Aligned_cols=67 Identities=10% Similarity=-0.038 Sum_probs=44.8
Q ss_pred ccccccccCC----------ccc--cccCCCCCcccccchhHHHhh-------------hhhhcccceEeEEecceeeee
Q psy15301 136 LEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAG-------------FVLAGFSGLVLVSLSTGDLDC 190 (947)
Q Consensus 136 lSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~-------------~V~a~~~G~lrGIKSqGMVLC 190 (947)
|+.++|++++ +++ -.++.|.-.+.++.|+|.+.. +++. .+++|+.|+|||||
T Consensus 9 f~k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp---~klrGv~S~GMlL~ 85 (111)
T 1pxf_A 9 FARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQK---AKMRGETSECMLLC 85 (111)
T ss_dssp HHHSCEEEEEEEEEECCTTCTTCCEEEEEETTEEEEEECCCCTTSHHHHHTTCEEEEETTCSC---CCBTTBCCCCCBCE
T ss_pred hhcccEEEEEEEEEEECCCCCeEEEEEEEeCCCceEEEEeccCcccchhcCCCEEEEEEEEec---ccCCCEecceEEEE
Confidence 4455555554 555 567778766778888654432 3333 47899999999999
Q ss_pred ccCCCc--eeee-------ccceE
Q psy15301 191 GVLDAR--WEGK-------CQRRW 205 (947)
Q Consensus 191 ASNADh--VELL-------PGERV 205 (947)
|..+++ +.|+ +|.||
T Consensus 86 a~~ed~~~~~l~~p~~~~~~G~~v 109 (111)
T 1pxf_A 86 AETDDGSESVLLTPERMMPAGVRV 109 (111)
T ss_dssp EECTTSCCEEECCCSSCCCTTCBC
T ss_pred ecccCCCcEEEEcCCCCCCCCCEe
Confidence 998764 5555 56665
No 6
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=97.55 E-value=5.5e-06 Score=73.97 Aligned_cols=67 Identities=10% Similarity=-0.197 Sum_probs=48.3
Q ss_pred ccccccccCC----------cc-c--cccCCCC-CcccccchhHHH-------------hhhhhhcccceEeEEecceee
Q psy15301 136 LEASMIFPTR----------KS-S--RPISTGP-SSLSLGFGAAAF-------------AGFVLAGFSGLVLVSLSTGDL 188 (947)
Q Consensus 136 lSa~~I~ptr----------ks-i--~pis~g~-ss~sLg~g~aaF-------------~~~V~a~~~G~lrGIKSqGMV 188 (947)
|+.++|++++ ++ + -.++.|+ -.+.++.|++.+ +++++. ++++|++|+|||
T Consensus 10 F~kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp---~kirGv~S~GMl 86 (112)
T 3g48_A 10 FLTLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPP---KRVAGFKSEVLV 86 (112)
T ss_dssp HHTCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCC---EEETTEEECSEE
T ss_pred hhceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccc---eeECCeecCcEE
Confidence 5566666655 55 4 6788886 578899997543 223333 488999999999
Q ss_pred eeccCCC-ceeee-------ccceE
Q psy15301 189 DCGVLDA-RWEGK-------CQRRW 205 (947)
Q Consensus 189 LCASNAD-hVELL-------PGERV 205 (947)
|||++++ +++|+ +|+||
T Consensus 87 ~s~~~~~~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 87 LGGVPEAGDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp CEEEEETTEEEECCCSSCCCTTCBC
T ss_pred eEeecCCCCEEEEeCCCCCCCCCCc
Confidence 9998766 48888 68876
No 7
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=97.42 E-value=2e-05 Score=69.86 Aligned_cols=62 Identities=10% Similarity=-0.018 Sum_probs=44.9
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCCceeee-------
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDARWEGK------- 200 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNADhVELL------- 200 (947)
||..+++ -.++.|+-.+.++.|++.|. +..... .+++|+.|+||||||+.++++.++
T Consensus 28 hp~adkL~~~~Vd~G~~~rqIv~G~~n~~--~~~al~G~~v~~~~nlkp~klrGv~S~GMl~sa~e~~~~~il~~~~~~~ 105 (111)
T 1pyb_A 28 VEGSEKLLKLTLSLGDEERTVVAGIAKYY--TPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGENLSVIVPDRDVK 105 (111)
T ss_dssp CSSCSCCEEEEEEETTEEEEEEECCTTTS--CHHHHTTCEEEEETTSCSSCTTSCCBSSEECEEECSSCEEEEEESSCCC
T ss_pred CCCCCccEEEEEEeCCcEEEEEECCcccc--CccccCCCEEECcEeecceEEccEeeccEEEEeccCCceEEEECCCCCC
Confidence 4444666 67888887799999998875 222223 366779999999999986677776
Q ss_pred ccceE
Q psy15301 201 CQRRW 205 (947)
Q Consensus 201 PGERV 205 (947)
+|++|
T Consensus 106 ~G~~v 110 (111)
T 1pyb_A 106 EGAKL 110 (111)
T ss_dssp TTEEC
T ss_pred CCCCC
Confidence 57665
No 8
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=97.35 E-value=4.9e-05 Score=67.10 Aligned_cols=62 Identities=13% Similarity=-0.040 Sum_probs=43.3
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHhhhhhhcc------------cceEeEEecceeeeeccCCCceeee-------
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGF------------SGLVLVSLSTGDLDCGVLDARWEGK------- 200 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~------------~G~lrGIKSqGMVLCASNADhVELL------- 200 (947)
||..+++ -.++.|+-.+.++.|++.|.-. ... ..+++|+.|+||+|||++.+.+.+|
T Consensus 24 hp~adkL~~~~Vd~G~~~rqIv~G~~n~~~~--~al~G~~v~~~~nlkp~klrGv~S~GMl~s~~~~~gi~~l~p~~~~~ 101 (107)
T 1mkh_A 24 HPNADKLYVVKVDLGDEVRTLVAGLKKYYKP--EELLNRYVVVVANLEPKKLRGIGSQGMLLAADDGERVALLMPDKEVK 101 (107)
T ss_dssp CTTCSSCEEEEEECSSCEEEEEECCTTTCCH--HHHTTCEEEEETTSCCEEC-CCEECCCBCEEECSSCEEECCCSSCCC
T ss_pred CCCCCccEEEEEEeCCeEEEEEeCCccccCh--hhcCCCEEECCeeEcceEEcCeeeccEEEEccCCCcEEEEeCCCCCC
Confidence 4555666 6789998789999998775321 111 2477889999999999765567666
Q ss_pred ccceE
Q psy15301 201 CQRRW 205 (947)
Q Consensus 201 PGERV 205 (947)
+|++|
T Consensus 102 ~G~~i 106 (107)
T 1mkh_A 102 LGAKV 106 (107)
T ss_dssp TTCEE
T ss_pred CCCCC
Confidence 56665
No 9
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=97.28 E-value=8.8e-05 Score=66.03 Aligned_cols=62 Identities=13% Similarity=-0.073 Sum_probs=44.5
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee------
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK------ 200 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL------ 200 (947)
||..+++ -.++.|+-.+.++.|++.|.. ..... ++++|+.|+||||||..++ .+.++
T Consensus 28 hp~adkL~~~~VD~G~~~rqIV~G~~n~~~--~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~~~~~~il~~~~~~ 105 (112)
T 2cwp_A 28 IKRTKKLIKLIVDFGNEERTIVTGIADQIP--PEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGKVYLIPVPEEV 105 (112)
T ss_dssp CTTCSSCEEEEEECSSCEEEEEECCTTTSC--GGGTTTCEEEEECSSCCEEETTEEECSEECCEECTTSCEECCBCCTTS
T ss_pred CCCCCccEEEEEEeCCeEEEEEECCccccC--hhhcCCCEEECeEEEccceeCCEecccEEEEeecCCCcEEEEECCCCC
Confidence 4444666 678999877999999987732 23333 3667799999999998755 46666
Q ss_pred -ccceE
Q psy15301 201 -CQRRW 205 (947)
Q Consensus 201 -PGERV 205 (947)
+|++|
T Consensus 106 ~~G~~i 111 (112)
T 2cwp_A 106 PVGARV 111 (112)
T ss_dssp CTTCEE
T ss_pred CCCCCC
Confidence 67765
No 10
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=97.22 E-value=5.3e-05 Score=67.15 Aligned_cols=57 Identities=12% Similarity=-0.123 Sum_probs=41.4
Q ss_pred ccCCccc---cccCCCC-CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee
Q psy15301 142 FPTRKSS---RPISTGP-SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK 200 (947)
Q Consensus 142 ~ptrksi---~pis~g~-ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL 200 (947)
||..+++ -.++.|+ -++.++.|++.|.- ..... ++++|++|+||+|||..++ .+.+|
T Consensus 23 hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~--~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~~~~i~~l 96 (109)
T 1gd7_A 23 HEKARKPSYKLWVDLGPLGVKQSSAQITELYR--PEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLL 96 (109)
T ss_dssp CTTCSSCCEEEEEECGGGCEEEEEECCTTTCC--HHHHTTCEEEEECSSCCEEETTEEECSEECEEECTTSCEEEE
T ss_pred CCCCccccEEEEEEcCCCcEEEEEECCccccC--hhhcCCCEEEeeEecCceEeccEeecCEEEEeecCCCcEEEE
Confidence 4555776 7899997 67999999977632 12222 4677899999999998764 37666
No 11
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=96.93 E-value=9.5e-05 Score=65.90 Aligned_cols=62 Identities=11% Similarity=-0.077 Sum_probs=43.6
Q ss_pred ccCCccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee---
Q psy15301 142 FPTRKSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK--- 200 (947)
Q Consensus 142 ~ptrksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL--- 200 (947)
||..+++ -.++.|+ -.+.++.|++.|.. ..... ++++|++|+||||||+.++ .++++
T Consensus 26 hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~--~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~~~~i~ll~~~ 103 (113)
T 2nzh_A 26 FPEARVPAIKLVIDFGTEIGIKQSSAQITKRYK--PEGLINKQVIAVVNFPPRRIAGFKSEVLVLGGIPGQGDVVLLQPD 103 (113)
T ss_dssp ETTSSSCEEEEEEECHHHHCEEEEEECCTTTCC--HHHHTTCEEEEETTSCCEEETTEEECSEECEEEEETTEEEEEEES
T ss_pred CCCCCcccEEEEEEeCCCCcEEEEEECCCcccC--HHHhCCCEEEeeEEEcceEECCEEeCCEEEEeecCCCCEEEEECC
Confidence 4555665 6788886 37999999987632 12222 4677899999999998754 47666
Q ss_pred ----ccceE
Q psy15301 201 ----CQRRW 205 (947)
Q Consensus 201 ----PGERV 205 (947)
+|++|
T Consensus 104 ~~~~~G~~i 112 (113)
T 2nzh_A 104 QPVPNGTKI 112 (113)
T ss_dssp SCCCTTCEE
T ss_pred CCCCCCCCC
Confidence 67776
No 12
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=96.75 E-value=0.00016 Score=64.71 Aligned_cols=57 Identities=11% Similarity=-0.128 Sum_probs=40.1
Q ss_pred ccCCccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee
Q psy15301 142 FPTRKSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK 200 (947)
Q Consensus 142 ~ptrksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL 200 (947)
||..+++ -.++.|+ -.+.++.|++.|. +..... .+++|++|+||||||+.++ .+.+|
T Consensus 29 hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~--~~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~~~~i~ll 103 (116)
T 2q2i_A 29 FPEARKPAIKVKIDFGPEIGIKKSSAQITVHY--TPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANGDIVLA 103 (116)
T ss_dssp CTTSSSCCEEEEEECHHHHCEEEEEESCTTTC--CHHHHTTCEEEEECCSCCEEETTEEECCEECEEECTTSCEEEE
T ss_pred CCCCCCccEEEEEEeCCCCcEEEEEECCcCcc--ChhhcCCCEEECceEEcceEECCEEeCCEEEEeecCCCcEEEE
Confidence 4444665 5788886 3799999998773 222222 3677899999999998654 47666
No 13
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=96.63 E-value=0.00022 Score=65.36 Aligned_cols=64 Identities=9% Similarity=-0.214 Sum_probs=44.0
Q ss_pred cccccccccCC----------ccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEeccee
Q psy15301 135 CLEASMIFPTR----------KSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGD 187 (947)
Q Consensus 135 ClSa~~I~ptr----------ksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGM 187 (947)
=|+.++|++++ |++ -.++.|+ -.+.++.|++.|.- ..... ++++|++|+||
T Consensus 27 df~k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~--p~al~G~~v~~~~nlkp~kirGv~SeGM 104 (131)
T 2q2h_A 27 DFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYT--PESLVGRQVLGVVNFPPRQIGPFRSEVL 104 (131)
T ss_dssp HHHTSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCC--HHHHTTCEEEEECCSCCEEETTEEECCE
T ss_pred HhhccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccC--hhhcCCCEEECceEEcceEECCEEeCcE
Confidence 35556665554 554 5688886 37999999987632 22222 46778999999
Q ss_pred eeeccCCC-ceeee
Q psy15301 188 LDCGVLDA-RWEGK 200 (947)
Q Consensus 188 VLCASNAD-hVELL 200 (947)
||||++++ .+.+|
T Consensus 105 l~sa~~~~~gi~lL 118 (131)
T 2q2h_A 105 TLGFADANGDIVLA 118 (131)
T ss_dssp ECEEECTTSCEEEE
T ss_pred EEEeecCCCcEEEE
Confidence 99998754 47666
No 14
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=96.48 E-value=0.00044 Score=75.67 Aligned_cols=66 Identities=11% Similarity=-0.115 Sum_probs=0.0
Q ss_pred cccccccccccCC----------ccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceee
Q psy15301 133 SGCLEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDL 188 (947)
Q Consensus 133 ~gClSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMV 188 (947)
+.=|+.++|+++. +++ -.|+.|.-.+.++.|++.|.. .+... ++++||.|+|||
T Consensus 620 ~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~~~~~iv~g~~~~~~--~~~l~G~~v~~~~nl~~~k~~g~~S~gM~ 697 (722)
T 1rqg_A 620 FDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYK--PEELLNRYVVVVANLEPKKLRGIGSQGML 697 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCCceEEEEECCcccCC--HHHcCCCEEeCeeEEcceeeCCcccCeEE
Confidence 3446778888876 445 678889877999999987731 12222 367889999999
Q ss_pred eeccCCCceeee
Q psy15301 189 DCGVLDARWEGK 200 (947)
Q Consensus 189 LCASNADhVELL 200 (947)
|||+.++++.+|
T Consensus 698 ~~~~~~~~i~~l 709 (722)
T 1rqg_A 698 LAADDGERVALL 709 (722)
T ss_dssp ------------
T ss_pred EEeeCCCcEEEe
Confidence 999766667666
No 15
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=95.66 E-value=0.0015 Score=63.76 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=37.5
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHhh----------hhhhc----ccceEeEEecceeeeecc
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFAG----------FVLAG----FSGLVLVSLSTGDLDCGV 192 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~----------~V~a~----~~G~lrGIKSqGMVLCAS 192 (947)
||..|++ -.++.|.-++.++.|++-|.- +++.+ -.+++||+.|+||+++|.
T Consensus 104 hP~ADkL~v~~VdvG~~~~qIV~Ga~n~~~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~GMlcSa~ 170 (199)
T 3bu2_A 104 HPDADKLSVLSVDVATEKLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMK 170 (199)
T ss_dssp CTTTSSCEEEEEECSSCEEEEEECCTTCCTTCEEEEECTTCBCTTSCBCCEEEETTEEEESEECCTT
T ss_pred CCCCCEEEEEEEEeCCEEEEEEeCCchhhCCCEEEEEecCCCccCCceEeeeEEcCceeccEEeehh
Confidence 7888888 789999778999999887632 11100 125999999999987775
No 16
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=71.21 E-value=0.57 Score=52.60 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=33.9
Q ss_pred ccCCccc--cccCCCCCcccccchhHHHh----------hhhhhc--c---cceEeEEecceeeeecc
Q psy15301 142 FPTRKSS--RPISTGPSSLSLGFGAAAFA----------GFVLAG--F---SGLVLVSLSTGDLDCGV 192 (947)
Q Consensus 142 ~ptrksi--~pis~g~ss~sLg~g~aaF~----------~~V~a~--~---~G~lrGIKSqGMVLCAS 192 (947)
||.. ++ -+|++| -++.++.|++-|. |+++.+ + .++++|+.|+||+++|.
T Consensus 56 hp~a-kL~v~~Vd~G-~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GMlcs~~ 121 (785)
T 1b7y_B 56 IPGT-RLKRLVLDAG-RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALSPR 121 (785)
T ss_dssp CTTS-SCEEEEEESS-SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEECCHH
T ss_pred CCCC-eEEEEEEecC-CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccccccceeeeHH
Confidence 6766 66 678888 6788888888772 222211 1 26999999999985554
No 17
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=67.27 E-value=0.81 Score=51.45 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=36.3
Q ss_pred cccCCccc--cccCCCC-CcccccchhHHHh----------hhhhhc----ccceEeEEecceeeeecc
Q psy15301 141 IFPTRKSS--RPISTGP-SSLSLGFGAAAFA----------GFVLAG----FSGLVLVSLSTGDLDCGV 192 (947)
Q Consensus 141 I~ptrksi--~pis~g~-ss~sLg~g~aaF~----------~~V~a~----~~G~lrGIKSqGMVLCAS 192 (947)
-||..|++ -+|+.|. .++.++.|+.-|. |+++.+ -.++++||.|+||+++|.
T Consensus 55 ~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~~g~~v~va~~Ga~l~~~~~ik~~k~rG~~S~GMlcs~~ 123 (795)
T 3pco_B 55 QHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLCSFS 123 (795)
T ss_dssp CCTTCSSCCEEEEECSSSSCEEEECCCSSCCTTCEEEEECTTCBCTTSCBCCCEESSSSEESSEECCSG
T ss_pred ecCCCCeEEEEEEEcCCCcEEEEEeCCccccCCCEEEEEecCcCcCCCceEcccccCCeecCcEecchh
Confidence 57888887 7888887 5788999887552 233321 125899999999954443
No 18
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=59.38 E-value=1.5 Score=49.12 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=29.5
Q ss_pred cccCCCC-CcccccchhHHHh----------hhhhhc----ccceEeEEecceeeeecc
Q psy15301 149 RPISTGP-SSLSLGFGAAAFA----------GFVLAG----FSGLVLVSLSTGDLDCGV 192 (947)
Q Consensus 149 ~pis~g~-ss~sLg~g~aaF~----------~~V~a~----~~G~lrGIKSqGMVLCAS 192 (947)
-+|++|. -++.|+.|++-+. |+++.+ -.++++||.|+||+++|.
T Consensus 61 ~~vd~g~~~~~~Iv~ga~n~~~g~~v~va~~Ga~lpg~~~ik~~klrG~~S~GMlcs~~ 119 (795)
T 2rhq_B 61 CQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGMICSLQ 119 (795)
T ss_dssp EEEECSSSSCEEEECCCTTCCTTCEEEEEEEEEEETTTEECCCEEETTEEECSEECCSG
T ss_pred EEEEcCCCeEEEEEeCCchhhCCCEEEEEecCcCcCCCceEcceeecCccccceeeeHH
Confidence 5677776 4788888876653 222211 125999999999996654
Done!