RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15301
(947 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 4e-14
Identities = 81/488 (16%), Positives = 143/488 (29%), Gaps = 157/488 (32%)
Query: 40 VADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKL----HSST 95
V DM K ++ E++ +I + S D + + L F
Sbjct: 38 VQDMPKSILSK-EEIDHI-------IMSKDAVS----GTLRL-------FWTLLSKQEEM 78
Query: 96 TIRFCICSIGTN---LTNPLTTVLGAGSPNST-FSTYRESASGCLEASMIFPTRKSSRP- 150
+F + N L +P+ T S + + R+ + +F SR
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQ 135
Query: 151 ----ISTGPSSLSLGFGAAAFAGFVLAGFSG-----LVLVSLSTGDLDC----GVLDARW 197
+ L ++ G G + L + + C + W
Sbjct: 136 PYLKLRQALLELRPA------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---W 186
Query: 198 --EGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGK---------- 245
C P+ VL +K+ + P+ + + + K +
Sbjct: 187 LNLKNCNS----------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 246 ----------------VWTVENVEGFVTSQRVNPLNNFSENLEC-----GRDKSQVSQKI 284
V + F NL C R K
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFKQ------ 276
Query: 285 DIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQIS 344
V D + + TT+I+ + +T E + K ++ ++L R+ +
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLP--REVLTTN 326
Query: 345 -QKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQK- 402
+++ I+A+ + D DN H V +K ESS+N L EPAE +
Sbjct: 327 PRRLSIIAES--IRDGLATWDNWKH--VNCDKLT---TIIESSLNVL----EPAEYRKMF 375
Query: 403 -----LQENV---EKWYLKHWESVILYKRPGEDFLVQPAVISLSET-PKKSVI----LY- 448
+ W VI K + + SL E PK+S I +Y
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 449 --KCPGED 454
K E+
Sbjct: 434 ELKVKLEN 441
Score = 63.7 bits (154), Expect = 2e-10
Identities = 81/706 (11%), Positives = 189/706 (26%), Gaps = 219/706 (31%)
Query: 305 HRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITD 364
H E + K+I + D F +N +C +D V D
Sbjct: 5 HHMDFETGEHQYQYKDI-LSVFEDAFVDNFDC-KD----------------VQDMP---- 42
Query: 365 NTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRP 424
+ + + + E ++ ++ V W L +
Sbjct: 43 ----KSILSKE-------------------EIDHII-MSKDAVSGTLRLFW---TLLSKQ 75
Query: 425 GEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVT-NSTHSK 483
E +VQ V + Y FL+ P + ++ ++ +
Sbjct: 76 EE--MVQKFVEEVLRIN------Y-----KFLMSP----IKTEQRQPSMMTRMYIEQRDR 118
Query: 484 ENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSK-------TG-GEST--- 532
F + N +R Q + ++ + E+ P+K G G++
Sbjct: 119 LYNDNQVFA----KYNVSRLQPYLKLRQ------ALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 533 ---SNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSN 589
+Y+V+ + + ++ ++ N + E L
Sbjct: 169 DVCLSYKVQCKMDFKIFW---------------------LNLKNCNSPE-TVLEMLQKLL 206
Query: 590 LEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKR---ILEDIE 646
++ + + + ++ ++ RRL K + +L +++
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLL----------KSKPYENCLLVLLNVQ 254
Query: 647 DRIEEVVLGLD----------DADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKC 696
+ + + + + L+ T+ + L + T E + ++ K
Sbjct: 255 NA--KAWNAFNLSCKILLTTRFKQVT-DFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKY 310
Query: 697 TNV----LDRVDKSTNILDNKG-SSNKSSEAKRPNSSSKPNSSKYNE---------ESNE 742
+ L R +TN + + ++ N K E E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 743 SSSLVKS----NKDSPTETSITSE------SDKESQDEGNPIVHKPEETKDKNVRKSSDI 792
+ + I + D D +K + S +
Sbjct: 371 YRKMFDRLSVFPPSAH----IPTILLSLIWFDVIKSD--------VMVVVNKLHKYSL-V 417
Query: 793 EGTGQKSS----DLQDTAQKSSDLEGTARKSSDLEG-TARKSSDLEGTARKSND------ 841
E ++S+ + + + E +S ++ K+ D + D
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 842 -------LEQSAQKSS-------DLEGTAQK----SSDLQGTAQKSSDLDGTARKSSDLD 883
+E ++ + D QK S+ + + L L
Sbjct: 477 IGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-------QQLK 528
Query: 884 RYN--IGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINP 927
Y I D + + L + L + +L++ +
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Score = 48.3 bits (114), Expect = 1e-05
Identities = 50/376 (13%), Positives = 100/376 (26%), Gaps = 106/376 (28%)
Query: 633 EKDNKRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREI 692
E + K IL ED +D+ D K+V + ++E
Sbjct: 13 EHQYQYKDILSVFEDAF------VDN----------------FDCKDVQDMPKSILSKEE 50
Query: 693 VDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPN----SSKYNEESNESSSLVK 748
+D D V + + S + K + N S E +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----- 105
Query: 749 SNKDSPTETSITSESDKESQDEGNPI-----VHKPEETKD-----KNVRKSSDI-----E 793
S + D+ D N + V + + +R + ++
Sbjct: 106 ----SMMTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 794 GTGQKSSDLQDTAQKSSDLEG---------TARKSSDLEGTARKSSDLEGTARKS--NDL 842
G+G K+ + S ++ + + E L + +
Sbjct: 160 GSG-KTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 843 EQSAQKSSDLEGTAQKSSDLQGTAQ-KSS--DLDG------------------TARKSSD 881
+ S+ + + L + ++ L T R
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 882 LD------RYNIGIEDFLFGSMSEEQTRMLKVYSKVLTL--ADLVRVLQVPINPFNQQKV 933
D +I ++ ++ ++ + K L DL R + + NP
Sbjct: 278 TDFLSAATTTHISLDHHSMT-LTPDEV--KSLLLKYLDCRPQDLPREV-LTTNPR----- 328
Query: 934 SFLSLV-ALIR-MKNT 947
LS++ IR T
Sbjct: 329 -RLSIIAESIRDGLAT 343
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain,
OB-fold, tRNA synthetase complex, RNA binding protein;
1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Length = 171
Score = 68.6 bits (168), Expect = 1e-13
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 207 LHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQ 259
+ PD LNPKKKI+E + PDL TND ATYKG + V+ +G +Q
Sbjct: 104 FDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG-KGVCRAQ 155
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo
sapiens} SCOP: b.40.4.4
Length = 172
Score = 62.1 bits (151), Expect = 3e-11
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 207 LHGYTR-NPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQ 259
+ GY + PD L PKKK+FE + D K ++ A +K + + G ++ +
Sbjct: 111 VKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK--LGSISCK 162
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-08
Identities = 62/380 (16%), Positives = 122/380 (32%), Gaps = 133/380 (35%)
Query: 397 AELLQKLQE-------------NVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKK 443
AE L +L N+ +W L++ + P +D+L+ + S P
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEW-LENPSN-----TPDKDYLLSIPI-SC---P-- 239
Query: 444 SVILYKCPGEDFLVQPA---VI--SLSETPKKVNLDKVTNSTHSKENGRV---------- 488
+I ++Q A V L TP ++ + HS+ G V
Sbjct: 240 -LI--------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVTAVAIAETDS 288
Query: 489 -NNFREESDRVNT------AREQCSEEGKERKTNSTSSFE---VTPSKTGGESTSNYQ-- 536
+F + T R + +S + S E +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCY--------EAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 537 VKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSER------LPTS-- 588
+ + +++V ++ N + +++ S + N + P S
Sbjct: 341 ISNLT-------QEQVQDYVNKTNSHLPAGKQVEIS--LVN----GAKNLVVSGPPQSLY 387
Query: 589 --NLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSN-----DEPTRTEKDNKRKRI 641
NL + ++ + R+P +E R+L SN P + +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSE---------RKLKFSNRFLPVASPFHSH-------L 431
Query: 642 LEDIEDRIEEVVLGLDDADESGNELN---EDQTSEAMDLKEVAEHQTESENREIVDKCTN 698
L D I + ++ ++ + ++ D T + DL+ ++ +E IVD
Sbjct: 432 LVPASDLINKDLVK-NNVSFNAKDIQIPVYD-TFDGSDLRVLSGSISER----IVDCIIR 485
Query: 699 VLDRVD-------KSTNILD 711
V K+T+ILD
Sbjct: 486 --LPVKWETTTQFKATHILD 503
Score = 49.7 bits (118), Expect = 6e-06
Identities = 63/307 (20%), Positives = 100/307 (32%), Gaps = 86/307 (28%)
Query: 8 RIHGKHPGPVRHLLKILT--LKRILTGVKTQPVCVA------DMKKKRVTPLEQLKNIGI 59
++ G PG +R LK T + ++T V +A + L IG+
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTA-----VAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 60 -----TGFFSL--------FSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGT 106
SL +E S LSI+ L ++ + +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQD--YVNKTNSHLPA 362
Query: 107 N------LTN-PLTTVLGAGSPNS--TFSTY--RESASGCLEASMI-FPTRK---SSR-- 149
L N V+ +G P S + + A L+ S I F RK S+R
Sbjct: 363 GKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 150 PISTGP--SSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKL 207
P+++ P S L L A+ L + VS + D+ V D +G L
Sbjct: 422 PVAS-PFHSHL-LV-PASDLINKDLVKNN----VSFNAKDIQIPVYDTF-DGS-----DL 468
Query: 208 HGYTRNPDPVLNPKKKIFE--TVAP-DLKTNDSNQATY-----KGKVW-----TVENVEG 254
R ++ +I + P +T +AT+ G T N +G
Sbjct: 469 ----RVLSGSISE--RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 255 FVTSQRV 261
T RV
Sbjct: 523 --TGVRV 527
Score = 36.2 bits (83), Expect = 0.059
Identities = 45/250 (18%), Positives = 73/250 (29%), Gaps = 98/250 (39%)
Query: 543 DEKYYEKKRVSTSKDEVNEN---------GRKKRRISTSNEITNNKECSERLPTSNLEVS 593
D + + S D V N G K +RI E E
Sbjct: 1650 DNHFKDTYGFSIL-DIVINNPVNLTIHFGGEKGKRIR------------ENYSAMIFE-- 1694
Query: 594 QSNKDGDSETKRVPSNEILNEENSK------KRRLS-TSNDEP--TRTEKDNKRKRILED 644
+ DG +T+++ + +NE ++ K LS T +P T EK ED
Sbjct: 1695 -TIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK-----AAFED 1746
Query: 645 IEDR----IEEVV----LG-------------LDDA-----------------DESGNE- 665
++ + + LG ++ DE G
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 666 -----LNEDQTSEAMD---LKEVAEHQTESENR--EIV-DKCTN---V----LDRVDKST 707
+N + + + L+ V E + EIV N V L +D T
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVT 1866
Query: 708 NILDNKGSSN 717
N+L+
Sbjct: 1867 NVLNFIKLQK 1876
Score = 33.9 bits (77), Expect = 0.30
Identities = 83/559 (14%), Positives = 145/559 (25%), Gaps = 243/559 (43%)
Query: 40 VAD-MKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIR 98
V+ ++ +V +Q+ N+ +T F + + L G +H+
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCY-------------------LEGNDIHA----- 103
Query: 99 FCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTRKSSRPISTGPSSL 158
+ L T L Y + A ++ + RP +S
Sbjct: 104 -----LAAKLLQENDTTLVK--TKELIKNY-------ITARIM-----AKRPFDKKSNS- 143
Query: 159 SLGFGAAA---------FAG--------------------FV--LAGFSGLVLVSLSTGD 187
+L F A F G V L FS L L
Sbjct: 144 AL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 188 LDCG-----VLDARWEGKCQRRWKLHGYTRNPD-------PVLNPKKKIFETVAPDLKTN 235
LD L+ W L + PD P+ P I
Sbjct: 203 LDAEKVFTQGLNIL-------EW-LENPSNTPDKDYLLSIPISCPL--IGVI-------- 244
Query: 236 DSNQ-ATYKGKVWTVENVEGFVTSQRVNPLNNFSENLECGRDKSQVSQKIDIVADKSNVS 294
Q A Y + GF P L+ + SQ + + A +
Sbjct: 245 ---QLAHYV----VTAKLLGF------TP-GELRSYLKGA---TGHSQGL-VTAVAIAET 286
Query: 295 DT-TNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADK 353
D+ + + ++ + ++ F + C S I+ D
Sbjct: 287 DSWESFFVSV-------RKAIT----------VL--FFIGVRCYEAYPNTSLPPSILEDS 327
Query: 354 SNVSDTTNITDNTSHRP-----VTTNKTDLSQDKTESSVNKLNVRME------------- 395
++ P ++ +L+Q++ + VNK N +
Sbjct: 328 LENNEGV---------PSPMLSIS----NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 396 -------PAELLQKLQENVEKWYLKHWESVILYKRP-GED----------------FLV- 430
P + L L + K K P G D FL
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRK-----------AKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 431 ---------QPAVISLSETPKKSVILY-----KCP------GEDF------LVQPAVISL 464
PA +++ K+ + + + P G D + + V +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 465 SETPKKVNLDKVTN--STH 481
P V + T +TH
Sbjct: 484 IRLP--VKWETTTQFKATH 500
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 46.6 bits (109), Expect = 4e-05
Identities = 45/404 (11%), Positives = 117/404 (28%), Gaps = 30/404 (7%)
Query: 415 WESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLD 474
++ I + + + S IL L E P ++
Sbjct: 485 FQDPIFGNSDFQSYFNDKTIHSKGSPILSFDILPGFNKIYKNKTNFYSLLIERPSQLTFA 544
Query: 475 KVTNSTHSKENGRVNNFREESDRVNTAREQ---CSEEGKERKTNSTSSF--------EVT 523
N + + + +++T + + + + + S+F ++
Sbjct: 545 SSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSNFQILLSVFNKIF 604
Query: 524 PSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEI------TN 577
+S+ Y + Q + + +++ + D+ ++ R + I I
Sbjct: 605 EKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNT 664
Query: 578 NKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSND-----EPTRT 632
++ L ++ S+ + +E V + + E+ ND +
Sbjct: 665 SRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSM 724
Query: 633 EKDNKRKRILEDIEDRIEEVVLGLDDADESGNE------LNEDQTSEAMDLKEVAEHQTE 686
+ +I + D++++ L ++ + E + + S + Q
Sbjct: 725 INELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLY 784
Query: 687 SENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSL 746
V V ++ S + ++ S S +S
Sbjct: 785 MTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQ--EAKSYTDEQE 842
Query: 747 VKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSS 790
+K + I E + N VH ++ +K+ R +
Sbjct: 843 FMLDKSIDSIEGIILEWFTPNAKYANQCVHSMNKSGNKSWRANC 886
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 36.0 bits (82), Expect = 0.068
Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 17/313 (5%)
Query: 578 NKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNK 637
NK LP N S + E K L E N + +SN E +
Sbjct: 538 NKVAVFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFN 597
Query: 638 RKRILEDIEDRIEEVVLGLDDADESGN--ELNEDQTSEAMDLKEVAEHQTESENREIVDK 695
+ +EV D ++S E E + + ++ K +++ E++ + K
Sbjct: 598 KAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQK 657
Query: 696 CTNVLDRVDKSTNILDNKGSSNKSSEAKRPN------SSSKPNSSKYNEESNESSSLVKS 749
D+ +++ + + + + A N S + + S S +
Sbjct: 658 --------DEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEF 709
Query: 750 NKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKS 809
+ S E+ K + + PE ++ E K+ D Q
Sbjct: 710 KNGKNKDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 769
Query: 810 SDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKS 869
SDLE + + + K +L + + ++ L S + Q Q
Sbjct: 770 SDLENSVKDVIINQKVTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKE-QLAQQAQ 828
Query: 870 SDLDGTARKSSDL 882
+ D K+S+L
Sbjct: 829 KNEDFNTGKNSEL 841
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 31.7 bits (72), Expect = 0.88
Identities = 16/107 (14%), Positives = 35/107 (32%)
Query: 811 DLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSS 870
+L + + + + L + ++ EG + +L G + +
Sbjct: 87 ELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGA 146
Query: 871 DLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADL 917
+L G + SDL G D+ ++ R + L +L
Sbjct: 147 NLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNL 193
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.0 bits (70), Expect = 2.2
Identities = 16/137 (11%), Positives = 48/137 (35%), Gaps = 7/137 (5%)
Query: 281 SQKIDIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDK 340
S DI + + +T+ E ++ + IN++YI+ E+ + K
Sbjct: 848 SAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGK 907
Query: 341 SQISQKI-DIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAEL 399
++ +++ ++ + + +T+L ++S+ E
Sbjct: 908 GEMIEEVKRLIRSSLGNRAKEGLVVDFI------QQTNLDDLPDKASIIDAFFTFAQREQ 961
Query: 400 LQKLQENVEKWYLKHWE 416
++ + +++ L
Sbjct: 962 QREAEALIKEENLNEDA 978
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 29.6 bits (67), Expect = 3.0
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 573 NEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRT 632
+ + E + + E+ + +E ++ N E + D R
Sbjct: 6 QKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRV 65
Query: 633 --EKDNKRKRILEDIEDRIE 650
E +N R+R DIE +
Sbjct: 66 KAEMENLRRRTELDIEKAHK 85
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 30.4 bits (68), Expect = 3.3
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 150 PISTGPSSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEG 199
G LG+ + G V+ S V + G+ + G L W+
Sbjct: 171 IHEGGE----LGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQS 216
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 29.5 bits (66), Expect = 4.7
Identities = 11/104 (10%), Positives = 26/104 (25%)
Query: 800 SDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKS 859
+L GT S L + + + + + + L +
Sbjct: 90 GSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFE 149
Query: 860 SDLQGTAQKSSDLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTR 903
++ DL + ++ L + F + S
Sbjct: 150 VTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLS 193
Score = 28.3 bits (63), Expect = 8.8
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 8/135 (5%)
Query: 800 SDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKS 859
D + S +L GT S L + + ++ + ++
Sbjct: 80 CDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQ 139
Query: 860 SDLQGTAQKSSDLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLT------ 913
+ L + ++ DL N S+ L L+
Sbjct: 140 TRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTP 199
Query: 914 --LADLVRVLQVPIN 926
L L + I
Sbjct: 200 EQAIYLASALGLVIT 214
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 29.7 bits (66), Expect = 5.0
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 558 EVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENS 617
+ E K+ + ITN + + TS + DS+ + +N ++EE
Sbjct: 549 DAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEER 608
Query: 618 KKRRLSTSNDEPTRTEKDNKRKRILEDIED 647
++R + KR RI + E
Sbjct: 609 SRKRKLDEKENL-----SAKRSRIEQKEEL 633
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 29.5 bits (67), Expect = 5.6
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 627 DEPTRTEKDNKRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLKEVAEHQTE 686
++P K ++ L D + L E EL ++ E+ E +
Sbjct: 40 NDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEEREAL--KPELEEAAKK 97
Query: 687 SENREI 692
+
Sbjct: 98 LDELYH 103
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.9 bits (65), Expect = 5.9
Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 3/105 (2%)
Query: 548 EKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVP 607
E+ + + +++ I +E P ++ + +
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGV-PLEEAGGEEAAEPAEKAPTAEE 60
Query: 608 SNEILNEENSKKRRLSTSNDEPTRT--EKDNKRKRILEDIEDRIE 650
+ + +LS R + +N R+R +++E +
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEK 105
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 7.9
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 605 RVPSNEILNEENSKKRRLSTSNDEPTRT----EKDNK 637
+P NEIL EN+ + DE + + +K
Sbjct: 177 ELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 29.1 bits (66), Expect = 8.1
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 738 EESNESSSLVKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQ 797
+ N+ L+ S T + DK D+ I + K D
Sbjct: 534 QTRNQGDHLLHS-----TRKQVEEAGDKLPADDKTAIESALTALET--ALKGEDKAAIEA 586
Query: 798 KSSDLQDTAQKSSD 811
K +L +QK +
Sbjct: 587 KMQELAQVSQKLME 600
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.124 0.337
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,673,247
Number of extensions: 725711
Number of successful extensions: 976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 36
Length of query: 947
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 844
Effective length of database: 3,825,930
Effective search space: 3229084920
Effective search space used: 3229084920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (27.6 bits)