RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15301
         (947 letters)



>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 207 LHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVN 262
              +   PD  LNPKKKI+E + PDL TND   ATYKG  + V   +G   +Q ++
Sbjct: 104 FDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEV-KGKGVCRAQTMS 158


>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
           synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
          Length = 171

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 214 PDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTS 258
           PD  L PKKK+FE +  D K ++   A +K   +  +       S
Sbjct: 118 PDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKS 162


>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
           phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 357

 Score = 30.8 bits (69), Expect = 0.70
 Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 21/176 (11%)

Query: 249 VENVEGFVTSQRVNPLNNFSENLECG--RDKSQVSQKIDIVADKSNVSDTTNITDNTSHR 306
           +E V     S     +      L+     DK +    +   AD S+ +    +    +  
Sbjct: 183 IEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWTKA 242

Query: 307 PVTE--KETLHVRRKNINIEYIMDNFSENLECGRDKSQIS----------QKIDIVADKS 354
            + E  ++        +    + D  S  +     +SQI             +  VA+KS
Sbjct: 243 LMEEFFRQGDKEAELGLPFSPLCDRTSTLVA----QSQIGFIDFIVEPTFSVLTDVAEKS 298

Query: 355 NVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKW 410
                   + + +       +  L  +  + + + ++     +  ++++QEN +KW
Sbjct: 299 VQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVS---FRSTWVKRIQENKQKW 351


>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase
           catalytic subunit alpha-1, AMPK1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 153

 Score = 30.0 bits (67), Expect = 0.78
 Identities = 19/84 (22%), Positives = 35/84 (41%)

Query: 700 LDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSLVKSNKDSPTETSI 759
           L +VD  T +LD +   ++ +EAK   ++ + + S  N  S + S      +  P+E S+
Sbjct: 56  LYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSISNYRSCQRSDSDAEAQGKPSEVSL 115

Query: 760 TSESDKESQDEGNPIVHKPEETKD 783
           TS          +        T +
Sbjct: 116 TSSVTSLDSSPVDVAPRPGSHTIE 139


>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId:
           272131]}
          Length = 175

 Score = 29.8 bits (66), Expect = 1.1
 Identities = 17/86 (19%), Positives = 38/86 (44%)

Query: 790 SDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKS 849
           + +EG     + L     K+++LE      +++       ++LE       DL  +    
Sbjct: 85  AILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQ 144

Query: 850 SDLEGTAQKSSDLQGTAQKSSDLDGT 875
           ++L   A + ++L G   + ++L+GT
Sbjct: 145 ANLHQAALERANLTGANLEDANLEGT 170


>d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc
           hemocyanin {Giant octopus (Octopus dofleini) [TaxId:
           267067]}
          Length = 101

 Score = 27.7 bits (62), Expect = 2.5
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 166 AFAGFVLAGF--SGLVLVSLSTGDLDC 190
            FAGF+L     S  V   + T D +C
Sbjct: 4   VFAGFLLRTIGQSADVNFDVCTKDGEC 30


>d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc
           hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
          Length = 101

 Score = 27.7 bits (62), Expect = 2.5
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 166 AFAGFVLAGF--SGLVLVSLSTGDLDC 190
            FAGF+L G   S  +  S+   D +C
Sbjct: 4   VFAGFLLEGIGTSAHLDFSICAIDGEC 30


>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 196

 Score = 28.5 bits (63), Expect = 2.9
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 19/168 (11%)

Query: 519 SFEVTPSKTGGESTSNYQVKQTSNDEKYYEKK-------RVSTSKDEVNENGRKKRRIST 571
             +V   K     +S+     +S  EKY   K       +V    D+ + N     RI  
Sbjct: 5   EIDVLKQKVA--KSSDMAFAISSEHEKYLWTKMGCLVPIQVKWKLDKRHFNSNLSLRIRF 62

Query: 572 SN-EITNNKECSERLPTSNLEVSQSNKDGDSETKR-----VPSNEILNEENSKKRRLSTS 625
              +   N E + R P S++   +S+ + +          + ++E     +++K    T 
Sbjct: 63  VKYDKKENVEYAIRNPRSDVMKCRSHTEREQHFPFDSFFYIRNSEHEFSYSAEKGSTFTL 122

Query: 626 NDEPTRTEKDN----KRKRILEDIEDRIEEVVLGLDDADESGNELNED 669
              P   + +       +    D++DR + + L +   DE+GNE+   
Sbjct: 123 IMYPGAVQANFDIIFMCQEKCLDLDDRRKTMCLAVFLDDENGNEILHA 170


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.124    0.337 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,045,477
Number of extensions: 134563
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 10
Length of query: 947
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 853
Effective length of database: 1,116,976
Effective search space: 952780528
Effective search space used: 952780528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.1 bits)