BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15302
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CB80|NDUA2_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1 MAARFGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
+ A+ G L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WA
Sbjct: 10 IGAKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 67
>sp|P0CB79|NDUA2_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo abelii GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1 MAARFGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
+ A+ G L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WA
Sbjct: 10 IGAKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 67
>sp|Q02370|NDUA2_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Bos taurus GN=NDUFA2 PE=1 SV=2
Length = 99
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WA
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 67
>sp|Q4R5E2|NDUA2_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 1 MAARFGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
+ A+ G L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WA
Sbjct: 10 IGAKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 67
>sp|O43678|NDUA2_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Homo sapiens GN=NDUFA2 PE=1 SV=3
Length = 99
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WA
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 67
>sp|Q9CQ75|NDUA2_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Mus musculus GN=Ndufa2 PE=1 SV=3
Length = 99
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
L+E+R+HLCQ+ S GVRDF+ Q YV LK+A+P PIL+RECS V P +WA
Sbjct: 16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWA 67
>sp|Q0MQ92|NDUA2_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 1 MAARFGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
+ A+ G L+E+RIHLCQ+ S GVRDF+ + YV LK+AN PIL+RECS V P +WA
Sbjct: 10 IGAKLG--LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWA 67
>sp|Q9FIJ2|NDUA2_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1
Length = 97
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
+KELRI LCQ +S+ R F+ ++Y LK NPK PIL+RECSGV P +WA
Sbjct: 11 MKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQMWA 62
>sp|Q07842|NDUA2_NEUCR NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nuo-10.5 PE=4 SV=1
Length = 94
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 5 FGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
F LKE+R CQ G S+ R FL ++Y +K+ NP PIL+R+ SG P V+A
Sbjct: 7 FNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYA 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,796,029
Number of Sequences: 539616
Number of extensions: 911926
Number of successful extensions: 1746
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 9
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)