Query psy15302
Match_columns 68
No_of_seqs 104 out of 332
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:36:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3a_A NADH-ubiquinone oxidore 100.0 4.5E-29 1.5E-33 151.9 8.3 67 1-67 7-77 (102)
2 4gqo_A LMO0859 protein; virule 78.4 2.7 9.4E-05 28.3 4.1 29 23-51 39-67 (433)
3 2qsx_A Putative transcriptiona 70.3 4.8 0.00016 24.4 3.4 28 26-53 30-57 (218)
4 3ttz_A DNA gyrase subunit B; p 70.2 8.7 0.0003 24.7 4.7 38 28-65 158-197 (198)
5 2y7p_A LYSR-type regulatory pr 68.9 5.9 0.0002 24.0 3.6 27 26-52 19-45 (218)
6 4g68_A ABC transporter; transp 68.8 5.7 0.0002 27.3 3.8 40 10-51 61-101 (456)
7 3thi_A Protein (thiaminase I); 67.2 8.2 0.00028 25.3 4.2 37 11-50 2-38 (371)
8 3jv9_A OXYR, transcriptional r 66.2 7.5 0.00026 22.7 3.6 25 27-51 16-40 (219)
9 1elj_A Maltodextrin-binding pr 66.2 8.3 0.00028 25.6 4.1 28 24-51 16-43 (381)
10 1twy_A ABC transporter, peripl 64.3 7.3 0.00025 24.1 3.4 28 24-51 36-63 (290)
11 4aq4_A SN-glycerol-3-phosphate 63.9 7.5 0.00026 25.7 3.6 25 26-50 18-42 (419)
12 4ab5_A Transcriptional regulat 60.8 8.1 0.00028 22.6 3.0 38 10-52 8-45 (222)
13 1i6a_A OXYR, hydrogen peroxide 59.5 9.2 0.00031 22.8 3.1 36 11-51 6-41 (219)
14 2ql3_A Probable transcriptiona 58.6 6.4 0.00022 23.1 2.3 36 11-51 6-41 (209)
15 3onm_A Transcriptional regulat 57.9 9.9 0.00034 23.0 3.1 26 27-52 39-64 (238)
16 3hhf_B Transcriptional regulat 57.7 7.3 0.00025 22.7 2.4 25 26-50 18-42 (213)
17 2fyi_A HTH-type transcriptiona 57.3 8.8 0.0003 23.1 2.8 36 11-51 15-50 (228)
18 1xg8_A Hypothetical protein SA 56.6 17 0.00057 22.0 3.9 32 17-51 22-53 (111)
19 3ho7_A OXYR; beta-alpha-barrel 55.8 12 0.00042 22.1 3.2 37 10-51 11-47 (232)
20 3kos_A HTH-type transcriptiona 55.0 11 0.00036 22.3 2.8 27 26-52 23-49 (219)
21 3fzv_A Probable transcriptiona 54.9 12 0.00042 23.4 3.3 37 10-51 95-131 (306)
22 3oxn_A Putative transcriptiona 54.1 13 0.00043 22.4 3.1 38 10-52 19-56 (241)
23 1hym_A CMTI-V, hydrolyzed cucu 53.1 12 0.00043 18.9 2.5 19 34-52 22-40 (45)
24 2hxr_A HTH-type transcriptiona 53.1 9.4 0.00032 22.9 2.4 25 27-51 42-66 (238)
25 2esn_A Probable transcriptiona 51.9 16 0.00056 22.9 3.5 38 10-52 101-138 (310)
26 2w7y_A FCSSBP, probable sugar 51.9 24 0.00082 23.7 4.5 40 11-50 39-79 (430)
27 1ego_A Glutaredoxin; electron 51.8 22 0.00074 18.2 3.5 35 11-49 2-36 (85)
28 3fxq_A LYSR type regulator of 49.7 20 0.00068 22.6 3.7 26 26-51 103-128 (305)
29 3quf_A Extracellular solute-bi 48.5 15 0.00052 24.4 3.1 23 28-50 41-63 (414)
30 3i3v_A Probable secreted solut 48.1 8.2 0.00028 25.7 1.7 26 26-51 22-47 (405)
31 1uth_A LYSR-type regulatory pr 47.9 21 0.0007 22.8 3.5 27 26-52 116-142 (315)
32 2uvj_A TOGB, ABC type periplas 46.5 25 0.00086 23.4 3.9 37 11-51 7-43 (408)
33 2d7c_C RAB11 family-interactin 45.8 7.3 0.00025 19.7 0.9 21 24-44 18-38 (42)
34 1ixc_A CBNR, LYSR-type regulat 45.4 16 0.00054 22.7 2.6 37 10-51 91-127 (294)
35 2heu_A Sugar ABC transporter, 44.6 22 0.00075 23.7 3.4 25 27-51 31-55 (401)
36 2jr1_A Virulence regulator; H- 42.2 18 0.00061 20.6 2.2 25 22-46 49-74 (79)
37 2h9b_A HTH-type transcriptiona 41.1 18 0.00062 23.0 2.5 36 11-51 91-126 (312)
38 3mz1_A Putative transcriptiona 40.9 21 0.0007 22.0 2.6 26 26-51 99-124 (300)
39 2hv8_D RAB11 family-interactin 39.3 10 0.00035 20.8 0.9 21 24-44 40-60 (64)
40 2jwk_A Protein TOLR; periplasm 38.2 42 0.0014 17.2 3.3 24 30-53 32-55 (74)
41 2b3f_A Glucose-binding protein 38.2 35 0.0012 22.7 3.6 27 26-52 13-39 (400)
42 3cfx_A UPF0100 protein MA_0280 37.3 27 0.00094 22.5 2.9 27 24-50 13-39 (296)
43 3szp_A Transcriptional regulat 37.1 23 0.00079 21.7 2.4 37 10-51 91-127 (291)
44 2h98_A HTH-type transcriptiona 37.0 24 0.00082 22.6 2.6 36 11-51 91-126 (313)
45 4ecf_A ABC-type phosphate tran 35.8 15 0.00053 23.7 1.5 26 26-51 14-39 (264)
46 1ghh_A DINI, DNA-damage-induci 35.4 61 0.0021 18.2 5.4 43 11-53 2-47 (81)
47 3cij_A UPF0100 protein AF_0094 35.2 21 0.00072 23.0 2.1 27 24-50 13-39 (295)
48 3hhg_A Transcriptional regulat 35.1 26 0.00087 21.8 2.4 24 26-49 104-127 (306)
49 4exl_A PBP 1, phosphate-bindin 35.1 24 0.00081 22.9 2.3 25 26-50 14-38 (265)
50 1dfm_A Endonuclease bglii; res 34.4 38 0.0013 22.7 3.2 37 30-66 148-189 (223)
51 1eu8_A Trehalose/maltose bindi 33.9 43 0.0015 22.2 3.5 28 25-52 15-42 (409)
52 3lnu_A Topoisomerase IV subuni 33.3 91 0.0031 22.3 5.3 37 28-65 201-237 (408)
53 3cvg_A Putative metal binding 32.8 35 0.0012 22.1 2.9 29 23-51 28-61 (294)
54 2cvd_A Glutathione-requiring p 32.5 52 0.0018 19.4 3.4 38 11-48 2-54 (198)
55 4ay1_A Chitinase-3-like protei 31.6 31 0.0011 23.4 2.5 21 31-51 57-77 (365)
56 3ibh_A GST-II, saccharomyces c 30.9 38 0.0013 20.5 2.7 24 11-34 18-42 (233)
57 2vim_A Thioredoxin, TRX; thior 30.8 57 0.0019 16.8 3.1 36 11-50 22-57 (104)
58 3m9j_A Thioredoxin; oxidoreduc 30.3 57 0.0019 16.8 3.1 37 11-51 23-59 (105)
59 1ewf_A BPI, bactericidal/perme 28.9 64 0.0022 22.4 3.8 32 29-60 297-328 (456)
60 1al3_A Cys regulon transcripti 28.8 23 0.00079 22.7 1.4 25 27-51 105-129 (324)
61 1atg_A MODA, periplasmic molyb 28.6 20 0.00069 21.1 1.0 24 26-50 10-33 (231)
62 2wb9_A Glutathione transferase 28.5 90 0.0031 18.5 4.1 39 11-49 5-58 (211)
63 1pc3_A Phosphate-binding prote 28.2 17 0.00059 24.7 0.7 25 26-50 37-61 (350)
64 1vee_A Proline-rich protein fa 28.2 42 0.0014 19.3 2.4 21 11-31 75-95 (134)
65 4gd5_A Phosphate ABC transport 27.7 41 0.0014 21.5 2.5 26 25-50 46-71 (279)
66 2dj1_A Protein disulfide-isome 27.2 26 0.00088 19.5 1.3 40 11-50 37-76 (140)
67 2zuv_A Lacto-N-biose phosphory 27.2 40 0.0014 26.4 2.6 28 22-49 184-211 (759)
68 3v26_X ORF3, ORF95, probable s 27.1 87 0.003 17.7 3.6 32 12-44 3-34 (101)
69 3c9h_A ABC transporter, substr 27.1 61 0.0021 21.1 3.3 24 28-51 45-68 (355)
70 3cfz_A UPF0100 protein MJ1186; 26.8 28 0.00095 22.4 1.5 28 23-50 12-39 (292)
71 2jwp_A Malectin, MGC80075; sug 26.2 7.4 0.00025 24.0 -1.3 21 9-29 78-98 (174)
72 1mek_A Protein disulfide isome 26.2 27 0.00092 18.5 1.2 40 11-50 27-66 (120)
73 3r7w_B Gtpase2, GTP-binding pr 26.1 1.1E+02 0.0039 21.1 4.6 44 8-52 72-115 (331)
74 2kg4_A Growth arrest and DNA-d 26.0 50 0.0017 21.0 2.6 32 18-49 129-162 (165)
75 2fao_A Probable ATP-dependent 25.9 30 0.001 24.1 1.6 42 22-63 189-230 (309)
76 3uor_A ABC transporter sugar b 25.8 41 0.0014 23.0 2.3 26 26-51 40-65 (458)
77 3oo8_A ABC transporter binding 25.6 79 0.0027 20.9 3.7 38 10-51 28-65 (415)
78 3idv_A Protein disulfide-isome 25.5 56 0.0019 19.8 2.7 40 11-50 150-189 (241)
79 3ge3_E Toluene-4-monooxygenase 25.1 54 0.0018 19.3 2.5 18 36-53 30-47 (103)
80 2klx_A Glutaredoxin; thioredox 24.9 77 0.0026 16.4 3.0 23 10-32 6-28 (89)
81 3evi_A Phosducin-like protein 24.6 75 0.0026 18.1 3.1 36 11-50 26-61 (118)
82 2iru_A Putative DNA ligase-lik 24.6 41 0.0014 23.4 2.1 46 22-67 191-237 (303)
83 3sim_A Protein, family 18 chit 24.5 34 0.0012 22.5 1.7 22 31-52 63-84 (275)
84 1wxl_A Single-strand recogniti 24.4 28 0.00095 18.2 1.0 17 29-45 14-30 (73)
85 3qok_A Putative chitinase II; 24.3 51 0.0018 22.8 2.6 18 34-51 98-115 (420)
86 2d7l_A WD repeat and HMG-box D 24.0 43 0.0015 18.3 1.8 18 28-45 15-32 (81)
87 3fv5_A DNA topoisomerase 4 sub 23.8 1.1E+02 0.0039 19.2 4.0 26 28-53 168-193 (201)
88 2npb_A Selenoprotein W; struct 23.8 50 0.0017 19.0 2.1 38 11-52 4-42 (96)
89 1cq4_A Protein (serine protein 23.8 78 0.0027 15.7 2.8 31 33-66 16-46 (47)
90 3nm9_A HMG-D, high mobility gr 23.7 28 0.00097 18.2 1.0 19 28-46 13-31 (73)
91 3k01_A Acarbose/maltose bindin 23.2 60 0.0021 21.5 2.7 27 25-51 39-65 (412)
92 3iwh_A Rhodanese-like domain p 23.1 41 0.0014 18.8 1.6 20 12-31 58-77 (103)
93 1wgf_A Upstream binding factor 23.0 41 0.0014 18.4 1.6 18 28-45 30-47 (90)
94 1z7x_W Ribonuclease inhibitor; 22.8 86 0.0029 20.9 3.4 39 7-47 398-460 (461)
95 1itx_A Chitinase A1, glycosyl 22.7 46 0.0016 23.2 2.1 19 33-51 112-130 (419)
96 2ywq_A Protein Y, ribosomal su 22.0 73 0.0025 17.8 2.6 33 11-44 3-35 (105)
97 3vk9_A Glutathione S-transfera 22.0 69 0.0024 19.4 2.7 37 12-48 3-58 (216)
98 4euy_A Uncharacterized protein 21.7 99 0.0034 16.2 3.5 35 12-50 22-56 (105)
99 2p1m_B Transport inhibitor res 21.5 97 0.0033 21.3 3.6 35 7-51 506-540 (594)
100 4duh_A DNA gyrase subunit B; s 21.5 1.7E+02 0.0057 18.9 4.6 26 28-53 185-210 (220)
101 2fsx_A RV0390, COG0607: rhodan 21.3 70 0.0024 18.6 2.5 21 11-31 81-101 (148)
102 1ckt_A High mobility group 1 p 21.1 55 0.0019 16.7 1.8 18 28-45 11-28 (71)
103 3oa5_A CHI1; TIM barrel, hydro 20.9 52 0.0018 24.5 2.2 20 32-51 226-245 (574)
104 1syr_A Thioredoxin; SGPP, stru 20.8 1.1E+02 0.0037 16.2 3.4 36 11-50 29-64 (112)
105 1gwc_A Glutathione S-transfera 20.7 1E+02 0.0034 18.6 3.2 39 10-48 5-60 (230)
106 4emv_A DNA topoisomerase IV, B 20.7 1.4E+02 0.0049 19.4 4.1 26 28-53 191-216 (226)
107 2z8f_A Galacto-N-biose/lacto-N 20.5 74 0.0025 21.1 2.7 25 28-52 31-55 (412)
108 1gh2_A Thioredoxin-like protei 20.3 1.1E+02 0.0036 16.0 3.1 36 11-50 24-59 (107)
109 3f3q_A Thioredoxin-1; His TAG, 20.1 1.1E+02 0.0038 16.2 3.4 35 12-50 28-62 (109)
No 1
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=99.96 E-value=4.5e-29 Score=151.94 Aligned_cols=67 Identities=52% Similarity=0.916 Sum_probs=58.4
Q ss_pred Cccccc--C--cceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEecCCCCCEEEEEecCCCC
Q psy15302 1 MAARFG--S--KLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWASGKGTHN 67 (68)
Q Consensus 1 Ms~r~v--~--qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~~~~P~v~a~Y~nGr~ 67 (68)
|||+.+ . |||+|+|+||++++||+|+|+||+.+||+||++||+++|+|++++++||+|+|+|.||++
T Consensus 7 ~~~~~~l~~~~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~e 77 (102)
T 1s3a_A 7 AAASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQE 77 (102)
T ss_dssp -----------CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCE
T ss_pred hhhhhcCCCCCceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCE
Confidence 455444 3 499999999999999999999999999999999999999999999999999999999975
No 2
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=78.38 E-value=2.7 Score=28.28 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.5
Q ss_pred CHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 23 SSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 23 S~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
+..-.+++++.+.+|.++||+|.|.+..-
T Consensus 39 ~~~~~~~~~~~i~~F~~~~p~i~V~~~~~ 67 (433)
T 4gqo_A 39 NPTQVKYWDEMAKAYEKENPDVTIEVSQM 67 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHCcCeEEEEEEc
Confidence 45566899999999999999999988754
No 3
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=70.26 E-value=4.8 Score=24.38 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEecCC
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRECSG 53 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~~~ 53 (68)
...+|...+.+|++++|+|.|.+.....
T Consensus 30 ~~~~L~~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 30 ASLWLVPNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp HHHTHHHHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 3567889999999999999999987654
No 4
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=70.21 E-value=8.7 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.048 Sum_probs=28.0
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecCCCCC--EEEEEecCC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECSGVTP--VVWASGKGT 65 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~~~~P--~v~a~Y~nG 65 (68)
+.|.+.+-++|-.||.|.|.+...+...+ .-...|.+|
T Consensus 158 ~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~~f~~~gG 197 (198)
T 3ttz_A 158 ETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGG 197 (198)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECSSTTSCEEEEECCC--
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeecCCCCcceEEEEcCCC
Confidence 45788999999999999999977664332 456777766
No 5
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=68.85 E-value=5.9 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
...++..-+..|++++|++.|.+.+..
T Consensus 19 ~~~~lp~~l~~f~~~~P~v~l~l~~~~ 45 (218)
T 2y7p_A 19 EMYFMPPLMEALAQRAPHIQISTLRPN 45 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457888999999999999999998754
No 6
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=68.83 E-value=5.7 Score=27.25 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=27.0
Q ss_pred eEEEEEe-cCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHL-CQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~y-c~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
++|+|.| ..+++ ..-.+.+++.+.+|.++||+|.|.+..-
T Consensus 61 ~~vtit~w~~~~~--~~~~~~~~~~i~~F~~~~p~I~V~~~~~ 101 (456)
T 4g68_A 61 KKITLTFWNLFTG--EPAKTKVKEIIDQWNKENPNVQIVESVT 101 (456)
T ss_dssp --CEEEEEECCCS--TTHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CCEEEEEeeCCCC--chHHHHHHHHHHHHHHHCcCeEEEEEEC
Confidence 4566665 23332 2335778888899999999999987643
No 7
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=67.22 E-value=8.2 Score=25.33 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
.|+|.+ |+. +....++++..+.+|.++||+|+|.+..
T Consensus 2 tl~v~~--w~~-~~~~~~~~~~~~~~F~~~~p~i~V~~~~ 38 (371)
T 3thi_A 2 TLKVAI--YPY-VPDPARFQAAVLDQWQRQEPGVKLEFTD 38 (371)
T ss_dssp EEEEEC--CSC-SSCHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEEE--eCC-CCCHHHHHHHHHHHHHHhCCCeeEEEEe
Confidence 455555 443 2334788999999999999999998864
No 8
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=66.18 E-value=7.5 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.9
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 27 RDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 27 R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..++...+.+|++++|++.|.+...
T Consensus 16 ~~~l~~~l~~~~~~~P~i~i~i~~~ 40 (219)
T 3jv9_A 16 PYLLPKLIVSLRRTAPKMPLMLEEN 40 (219)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 4688899999999999999999764
No 9
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=66.16 E-value=8.3 Score=25.59 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 24 SGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.+-.+.++..+.+|.++||+|.|.+...
T Consensus 16 ~~~~~~~~~~i~~F~~~~p~i~V~~~~~ 43 (381)
T 1elj_A 16 PNELEVFQSLAEEYMALCPEVEIVFEQK 43 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 3456788899999999999999988653
No 10
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=64.25 E-value=7.3 Score=24.09 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 24 SGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..+-.++...+.+|++++|++.|.+...
T Consensus 36 ~~~~~~l~~~l~~f~~~~P~i~v~i~~~ 63 (290)
T 1twy_A 36 TSVARIMDVLAEKYNQQHPETYVAVQGV 63 (290)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cchHHHHHHHHHHHHhhCCCceEEEEec
Confidence 3333688899999999999999998764
No 11
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=63.88 E-value=7.5 Score=25.70 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-.+.+++.+.+|.++||+|.|.+..
T Consensus 18 ~~~~~~~~i~~F~~~~p~i~V~~~~ 42 (419)
T 4aq4_A 18 LGKEVDSLAQRFNAENPDYKIVPTY 42 (419)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCcCeEEEEEe
Confidence 3477888889999999999988654
No 12
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=60.75 E-value=8.1 Score=22.64 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
.+|+|-..+.- ...++...+.+|++.+|++.|.+....
T Consensus 8 g~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~i~i~i~~~~ 45 (222)
T 4ab5_A 8 GELRIAVECHT-----CFDWLMPAMGEFRPMWPQVELDIVSGF 45 (222)
T ss_dssp EEEEEECCCTT-----THHHHHHHHHHHHHHSTTEEEEEECCC
T ss_pred ceEEEEEehHH-----HHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 35666654432 236788899999999999999998754
No 13
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=59.52 E-value=9.2 Score=22.76 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.|+|-..+.- ...++...+.+|++++|++.|.+.+.
T Consensus 6 ~lrIg~~~~~-----~~~~l~~~l~~f~~~~P~v~l~l~~~ 41 (219)
T 1i6a_A 6 PLHIGLIPTV-----GPYLLPHIIPMLHQTFPKLEMYLHEA 41 (219)
T ss_dssp EEEEEECTTT-----HHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred EEEEEeccch-----hhhhhhHHHHHHHHHCCCeEEEEEEC
Confidence 4666654432 34688899999999999999999754
No 14
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=58.64 E-value=6.4 Score=23.10 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.|+|-..+.- ...++...+.+|++++|++.|.+...
T Consensus 6 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~i~i~l~~~ 41 (209)
T 2ql3_A 6 PIAVGCYPAL-----GPTILPSMLYAFTAEYPRASVEFRED 41 (209)
T ss_dssp EEEEEECGGG-----TTTTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eEEEeechhh-----hhhhHHHHHHHHHHHCCCceEEEEEC
Confidence 4566553322 23567888999999999999998764
No 15
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=57.94 E-value=9.9 Score=22.99 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 27 RDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 27 R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
..++...+.+|++++|++.|.+....
T Consensus 39 ~~~l~~~l~~f~~~~P~i~l~i~~~~ 64 (238)
T 3onm_A 39 DTLLPFLLNRVATLYPRLAIDVRVKR 64 (238)
T ss_dssp TTHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 46788999999999999999997643
No 16
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=57.74 E-value=7.3 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.7
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
...++...+.+|++++|++.|.+..
T Consensus 18 ~~~~l~~~l~~f~~~~P~v~l~i~~ 42 (213)
T 3hhf_B 18 VLHLLAPLAAKFNERYPHIRLSLVS 42 (213)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 3567789999999999999999984
No 17
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=57.25 E-value=8.8 Score=23.07 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.|+|-.. ..-...++...+.+|++++|++.|.+...
T Consensus 15 ~lrIg~~-----~~~~~~~l~~~l~~f~~~~P~v~l~l~~~ 50 (228)
T 2fyi_A 15 VLTIATT-----HTQARYSLPEVIKAFRELFPEVRLELIQG 50 (228)
T ss_dssp EEEEEEC-----HHHHHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eEEEeec-----cchHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 4666542 22345778899999999999999999764
No 18
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=56.64 E-value=17 Score=22.01 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=27.3
Q ss_pred cCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 17 CQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 17 c~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
|=+.+||+-+-+||+ +.++++.|+-+|.++--
T Consensus 22 CVnaPSSkeTyEWLq---Aal~RKyp~~~f~~~YI 53 (111)
T 1xg8_A 22 CVNAPTSKDIYDWLQ---PLLKRKYPNISFKYTYI 53 (111)
T ss_dssp GSSSCCHHHHHHHHH---HHHHHHCTTSCEEEEEE
T ss_pred ccCCCCchhHHHHHH---HHHhCcCCCCceEEEEE
Confidence 778999999999998 46789999999988654
No 19
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=55.77 E-value=12 Score=22.05 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.+|+|-..+.- ...++...+.+|++++|++.|.+...
T Consensus 11 g~l~Ig~~~~~-----~~~~l~~~l~~~~~~~P~v~i~~~~~ 47 (232)
T 3ho7_A 11 GRLNIAVLPTI-----APYLLPRVFPIWKKELAGLEIHVSEM 47 (232)
T ss_dssp EEEEEEECTTT-----HHHHHHHHHHHHHHHSTTEEEEEEEC
T ss_pred eeEEEEecccc-----chhhhHHHHHHHHHHCCCcEEEEEeC
Confidence 35677664432 34588899999999999999999754
No 20
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=54.98 E-value=11 Score=22.26 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
...++...+.+|++++|++.|.+....
T Consensus 23 ~~~~l~~~l~~f~~~~P~i~l~i~~~~ 49 (219)
T 3kos_A 23 AIGCLFPLLSDFKRSYPHIDLHISTHN 49 (219)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHhHHHHHHHHCCCceEEEEecc
Confidence 346778999999999999999997654
No 21
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=54.93 E-value=12 Score=23.36 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..|+|...+. -...++...+.+|++++|++.|.+...
T Consensus 95 g~l~i~~~~~-----~~~~~l~~~l~~f~~~~P~i~i~l~~~ 131 (306)
T 3fzv_A 95 GQIDIGCFET-----VAPLYLPGLIAGFRQAYPGVEIRIRDG 131 (306)
T ss_dssp EEEEEEEEGG-----GHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ceEEEEechh-----hhHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3566665432 245788899999999999999998764
No 22
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=54.11 E-value=13 Score=22.41 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
..|+|-.. ..-...++...+.+|.+++|++.|.+....
T Consensus 19 g~l~Ig~~-----~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~ 56 (241)
T 3oxn_A 19 QTFTIATT-----DYAMQTILPFALPRIYQEAPNVSFNFLPLQ 56 (241)
T ss_dssp CEEEEEEC-----SHHHHHTHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ceEEEEec-----hHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 34666553 233457888999999999999999998754
No 23
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=53.13 E-value=12 Score=18.94 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=15.0
Q ss_pred HHHHHHhCCCCeEEEEecC
Q psy15302 34 YVPLKQANPKFPILVRECS 52 (68)
Q Consensus 34 l~~~~~~NP~v~i~v~~~~ 52 (68)
-..|.+.||++.+.+.+..
T Consensus 22 ~~~I~~e~P~v~v~vl~~g 40 (45)
T 1hym_A 22 KAIIERQNPNVKAVILEEG 40 (45)
T ss_dssp HHHHHHHCTTCEEEEEECC
T ss_pred HHHHHHHCCCCeEEEecCC
Confidence 4568999999999887643
No 24
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=53.06 E-value=9.4 Score=22.90 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 27 RDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 27 R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..++...+.+|++++|++.|.+...
T Consensus 42 ~~~l~~~l~~f~~~~P~v~l~~~~~ 66 (238)
T 2hxr_A 42 SYFIGPLMADFYARYPSITLQLQEM 66 (238)
T ss_dssp TTTHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4567888999999999999998764
No 25
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=51.89 E-value=16 Score=22.92 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=28.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
..|+|-..+ .-...++...+.+|++++|++.|.+....
T Consensus 101 ~~l~Ig~~~-----~~~~~~l~~~l~~f~~~~P~i~i~l~~~~ 138 (310)
T 2esn_A 101 RTFVFAATD-----YTAFALLPPLMNRLQHSAPGVRLRLVNAE 138 (310)
T ss_dssp CEEEEECCH-----HHHHHHHHHHHHHHHHHSTTCEEEEECCS
T ss_pred ceEEEEeCh-----HHHHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 356665532 22456788899999999999999998754
No 26
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=51.87 E-value=24 Score=23.69 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=24.3
Q ss_pred EEEEEecCCCCCCH-HHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSS-GVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~-G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
.|+|-...++..+. ...+.++..+.+|.++||+|+|.+..
T Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~ 79 (430)
T 2w7y_A 39 VLEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEFKP 79 (430)
T ss_dssp EEEEEESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEE
T ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 46664433332222 34577888899999999998777654
No 27
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=51.78 E-value=22 Score=18.18 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=24.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEE
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVR 49 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~ 49 (68)
+|.+.+-+|.+.++-++.+|++ ++++++++++...
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~----l~~~~~~i~~~~v 36 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEK----LSNERDDFQYQYV 36 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH----HHHHHSSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHH----HHhcCCCceEEEE
Confidence 4666677788888988888765 4455566666543
No 28
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=49.74 E-value=20 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.7
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
...++...+.+|.+++|++.|.+...
T Consensus 103 ~~~~l~~~l~~f~~~~P~i~i~l~~~ 128 (305)
T 3fxq_A 103 ALAALPLALASFAREFPDVTVNVRDG 128 (305)
T ss_dssp HHTHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 35678899999999999999999874
No 29
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=48.48 E-value=15 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
+.++..+.+|.++||+|.|.+..
T Consensus 41 ~~~~~~~~~f~~~~p~i~V~~~~ 63 (414)
T 3quf_A 41 NQIGEVVKGFEKKNPDITLDVQY 63 (414)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hHHHHHHHHHHHHCcCeEEEEEe
Confidence 57788899999999999999875
No 30
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=48.13 E-value=8.2 Score=25.69 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=21.9
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
-.++++..+.+|.++||+|.|.+...
T Consensus 22 ~~~~~~~~~~~f~~~~p~i~V~~~~~ 47 (405)
T 3i3v_A 22 GSPTYLAAVDRFREENPGVKIKNLVN 47 (405)
T ss_dssp THHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred hhHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 35778888999999999999998653
No 31
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=47.94 E-value=21 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=22.5
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
...++...+.+|.+++|++.|.+....
T Consensus 116 ~~~~l~~~l~~f~~~~P~v~l~l~~~~ 142 (315)
T 1uth_A 116 EMYFMPPLMEALAQRAPHIQISTLRPN 142 (315)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 456778889999999999999987643
No 32
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=46.50 E-value=25 Score=23.35 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=26.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
+|+|.+ |++ ..-.+.++..+.+|.++||+|.|.+...
T Consensus 7 ~l~i~~--W~~--~~~~~~~~~~~~~f~~~~p~i~V~~~~~ 43 (408)
T 2uvj_A 7 NLRMSW--WGG--NGRHQVTLKALEEFHKQHPNINVKAEYT 43 (408)
T ss_dssp EEEEEE--ECC--HHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EEEEEE--ECC--cchHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 355543 443 3345778888999999999999988654
No 33
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=45.84 E-value=7.3 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.6
Q ss_pred HHHHHHHHhCHHHHHHhCCCC
Q psy15302 24 SGVRDFLAQHYVPLKQANPKF 44 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v 44 (68)
+-+|+||.+-|..+-+.+|++
T Consensus 18 ~~Le~YID~LL~~VmE~~P~i 38 (42)
T 2d7c_C 18 FRLQDYIDRIIVAIMETNPSI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 34
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=45.41 E-value=16 Score=22.70 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..|+|-..+.-. ..++...+.+|.+.+|++.|.+...
T Consensus 91 g~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~i~l~~~~~ 127 (294)
T 1ixc_A 91 GELSVAYFGTPI-----YRSLPLLLRAFLTSTPTATVSLTHM 127 (294)
T ss_dssp EEEEEEECSGGG-----GTHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred ceEEEEEccchh-----HHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 457776654322 4677888999999999999998764
No 35
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=44.64 E-value=22 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 27 RDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 27 R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.+.++..+.+|.++||+|.|.+..-
T Consensus 31 ~~~~~~~~~~f~~~~p~i~V~~~~~ 55 (401)
T 2heu_A 31 TKTLEEITRDFEKENPKIKVKVVNV 55 (401)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 4778888999999999999988653
No 36
>2jr1_A Virulence regulator; H-NS, DNA biding protein, DNA binding PR; NMR {Xylella fastidiosa}
Probab=42.15 E-value=18 Score=20.61 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCHHHHHHHH-hCHHHHHHhCCCCeE
Q psy15302 22 SSSGVRDFLA-QHYVPLKQANPKFPI 46 (68)
Q Consensus 22 sS~G~R~Fl~-~~l~~~~~~NP~v~i 46 (68)
--+=+.+++. -.|.++|.+||+..|
T Consensus 49 ~P~Wi~~~l~~~~~k~wk~~~p~~~~ 74 (79)
T 2jr1_A 49 IPKPFEAWIGTAAYTAWKAKHPDEKF 74 (79)
T ss_dssp CCHHHHHHHHHTTHHHHHHHSSSCSC
T ss_pred CCHHHHHHHHHhHHHHHHhhCCCCcC
Confidence 3455788885 699999999999876
No 37
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=41.12 E-value=18 Score=22.99 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=26.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.|+|...+.-+ ..++...+.+|++++|++.|.+...
T Consensus 91 ~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~v~i~l~~~ 126 (312)
T 2h9b_A 91 TIRIGFVGSLL-----FGLLPRIIHLYRQAHPNLRIELYEM 126 (312)
T ss_dssp EEEEEECGGGG-----GTTHHHHHHHHHHTCTTCEEEEEEC
T ss_pred eEEEEechhhh-----HhhHHHHHHHHHHHCCCcEEEEEeC
Confidence 56666544321 3577888999999999999999763
No 38
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=40.89 E-value=21 Score=21.97 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=22.3
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
...++...+.+|.+++|++.|.+...
T Consensus 99 ~~~~l~~~l~~f~~~~P~v~i~~~~~ 124 (300)
T 3mz1_A 99 ANLVIIPALPEFHKKYPDIQIDLGVS 124 (300)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 35678899999999999999999763
No 39
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=39.33 E-value=10 Score=20.80 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.6
Q ss_pred HHHHHHHHhCHHHHHHhCCCC
Q psy15302 24 SGVRDFLAQHYVPLKQANPKF 44 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v 44 (68)
+=+|+||.+-|..+-+.+|++
T Consensus 40 ~~Le~YID~LL~~ImE~~Psi 60 (64)
T 2hv8_D 40 FRLQDYIDRIIVAIMETNPSI 60 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 40
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=38.21 E-value=42 Score=17.18 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.4
Q ss_pred HHhCHHHHHHhCCCCeEEEEecCC
Q psy15302 30 LAQHYVPLKQANPKFPILVRECSG 53 (68)
Q Consensus 30 l~~~l~~~~~~NP~v~i~v~~~~~ 53 (68)
|...+..+++.+|+.++.|+-.+.
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~ 55 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKE 55 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHHHHHhhCCCceEEEEcCCC
Confidence 445567778889999999987654
No 41
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=38.20 E-value=35 Score=22.67 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=22.2
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
-.++++..+.+|.++||+|.|.+....
T Consensus 13 ~~~~~~~~~~~f~~~~p~i~V~~~~~~ 39 (400)
T 2b3f_A 13 EGPALEALIRLYKQKYPGVEVINATVT 39 (400)
T ss_dssp GCHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEecC
Confidence 357788888999999999999987543
No 42
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=37.26 E-value=27 Score=22.49 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=22.7
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 24 SGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
.++++.++.-+..|.++||.++|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (296)
T 3cfx_A 13 GSLSVPFEELEAEFEAQHPGVDVQREA 39 (296)
T ss_dssp GGGHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 347788888899999999999998854
No 43
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=37.13 E-value=23 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..|+|-..+.- ...++...+.+|.+.+|++.|.+...
T Consensus 91 ~~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~i~~~~~ 127 (291)
T 3szp_A 91 GRIRISAPSNL-----TKRMMMPMFNAFMEKYPDIHIELMMS 127 (291)
T ss_dssp EEEEEEEETTT-----HHHHTHHHHHHHHHHCTTEEEEEEEE
T ss_pred eEEEEeccHHH-----HHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45777664432 34678899999999999999999753
No 44
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=36.98 E-value=24 Score=22.64 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.|+|-....- ...++...+.+|++++|++.|.+...
T Consensus 91 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~l~l~~~ 126 (313)
T 2h98_A 91 TLRIGYVSSL-----LYGLLPEIIYLFRQQNPEIHIELIEC 126 (313)
T ss_dssp EEEEEECGGG-----GGTTHHHHHHHHHHHCTTSEEEEEEC
T ss_pred EEEEEechHh-----HHhHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5666654322 13578888999999999999999754
No 45
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=35.80 E-value=15 Score=23.73 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=21.7
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
+-.++...+..|++++|++.|.+...
T Consensus 14 ~~~~l~~~~~~f~~~~P~v~i~v~~~ 39 (264)
T 4ecf_A 14 LQPLVEAAGEQYTGEHLGTFINVQGG 39 (264)
T ss_dssp THHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEeC
Confidence 34678889999999999999988653
No 46
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=35.38 E-value=61 Score=18.24 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=35.1
Q ss_pred EEEEEecCCCCCCHHHHHHHH-hCHHHHHHhCCCC--eEEEEecCC
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLA-QHYVPLKQANPKF--PILVRECSG 53 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~-~~l~~~~~~NP~v--~i~v~~~~~ 53 (68)
+|.+.|....+=+.|..+=|+ +..-.+.+.+|++ .+.|+....
T Consensus 2 rVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~ 47 (81)
T 1ghh_A 2 RIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAA 47 (81)
T ss_dssp EEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEESS
T ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeecCC
Confidence 567788887788889988885 6777999999999 788887763
No 47
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=35.19 E-value=21 Score=22.99 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 24 SGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 24 ~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
.++++.++.....|.++||.++|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (295)
T 3cij_A 13 GSLTEPMKAFKRAFEEKHPNVEVQTEA 39 (295)
T ss_dssp GGGHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 346788888999999999999998754
No 48
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=35.13 E-value=26 Score=21.84 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEE
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVR 49 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~ 49 (68)
...++...+.+|.+.+|++.|.+.
T Consensus 104 ~~~~l~~~l~~f~~~~P~v~i~l~ 127 (306)
T 3hhg_A 104 VLHLLAPLAAKFNERYPHIRLSLV 127 (306)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356788899999999999999997
No 49
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=35.07 E-value=24 Score=22.88 Aligned_cols=25 Identities=4% Similarity=-0.025 Sum_probs=21.2
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
+-.++...+.+|.+++|++.|.+..
T Consensus 14 ~~~~~~~~~~~F~~~~P~v~i~v~~ 38 (265)
T 4exl_A 14 LQPLVEVAADEFGTIHVGKTVNVQG 38 (265)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEee
Confidence 4467788899999999999998865
No 50
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=34.43 E-value=38 Score=22.72 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=28.4
Q ss_pred HHhCHHHHH-HhCCCCeEEEEe----cCCCCCEEEEEecCCC
Q psy15302 30 LAQHYVPLK-QANPKFPILVRE----CSGVTPVVWASGKGTH 66 (68)
Q Consensus 30 l~~~l~~~~-~~NP~v~i~v~~----~~~~~P~v~a~Y~nGr 66 (68)
+..+|+.++ ...|++||++-- -...-|.|+.+|...|
T Consensus 148 ~l~~L~~~~~~~~~~vPI~vIGI~~~~~~~~~~~~~~~~~~~ 189 (223)
T 1dfm_A 148 AQNQLNSLAEYNVFDVPIRLVGLIEDFETDIDIVSTTYADKR 189 (223)
T ss_dssp HHHHHHHHHHTTCCCSCEEEEEEECCTTCCEEEEEEEESSSS
T ss_pred HHHHhhhhccCCCCCCCEEEEEecCccccceeEEehhhhhhh
Confidence 456778888 788999999843 2355789999998776
No 51
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=33.93 E-value=43 Score=22.19 Aligned_cols=28 Identities=4% Similarity=0.147 Sum_probs=22.8
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 25 GVRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 25 G~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
.-.+.++..+.+|.++||+|+|.+....
T Consensus 15 ~~~~~~~~~~~~f~~~~p~i~V~~~~~~ 42 (409)
T 1eu8_A 15 NEIEYWKGVIAEFEKKYPGVTVELKRQA 42 (409)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHCCCeEEEEEECC
Confidence 3457788889999999999999987643
No 52
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=33.32 E-value=91 Score=22.30 Aligned_cols=37 Identities=5% Similarity=-0.161 Sum_probs=27.5
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecCCCCCEEEEEecCC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECSGVTPVVWASGKGT 65 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~~~~P~v~a~Y~nG 65 (68)
+.|.+.|-++|..||.|.|.+.-.+... .....|.+|
T Consensus 201 ~~l~~rlrelA~Ln~Gv~I~l~der~~~-~~~f~yegG 237 (408)
T 3lnu_A 201 RALRHLLRAKAVLCPGLTVKLHDEATGE-QDSWYFENG 237 (408)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEETTTCC-EEEEECSSS
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeccCCc-eeEEEcCch
Confidence 5578889999999999999997655321 345667665
No 53
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=32.78 E-value=35 Score=22.12 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=22.0
Q ss_pred CHHHHHHHHhCHHHHHHh---C--CCCeEEEEec
Q psy15302 23 SSGVRDFLAQHYVPLKQA---N--PKFPILVREC 51 (68)
Q Consensus 23 S~G~R~Fl~~~l~~~~~~---N--P~v~i~v~~~ 51 (68)
|.....++...+..|+++ + |+|.|.+...
T Consensus 28 ~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~ 61 (294)
T 3cvg_A 28 GAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKS 61 (294)
T ss_dssp HHHHHTHHHHHHHHHHHHHHSCC---CEEEEEEC
T ss_pred cchhHHHHHHHHHHHHhhhcccCCCCeEEEEEeC
Confidence 344567889999999999 9 9999999764
No 54
>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Probab=32.47 E-value=52 Score=19.45 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHh-CH------------HHHHHhCCC--CeEEE
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQ-HY------------VPLKQANPK--FPILV 48 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~-~l------------~~~~~~NP~--v~i~v 48 (68)
+++|.|.+.++.|.-+|-.+.. .+ +++++.||. ||+++
T Consensus 2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~ 54 (198)
T 2cvd_A 2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILE 54 (198)
T ss_dssp CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEE
T ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCceEEEeCHHHHHHhccCCCCCCCCEEE
Confidence 4678888888888889988853 22 577788874 55544
No 55
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=31.60 E-value=31 Score=23.35 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.1
Q ss_pred HhCHHHHHHhCCCCeEEEEec
Q psy15302 31 AQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 31 ~~~l~~~~~~NP~v~i~v~~~ 51 (68)
-+.+.++|++||++++++.--
T Consensus 57 ~~~~~~lK~~~p~lKvllSiG 77 (365)
T 4ay1_A 57 YQTINSLKTKNPKLKILLSIG 77 (365)
T ss_dssp HHHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEe
Confidence 356778999999999998653
No 56
>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*
Probab=30.95 E-value=38 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.6
Q ss_pred EEEEEecCCCCCCHHHHHHHH-hCH
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLA-QHY 34 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~-~~l 34 (68)
+++|.+...++-|.-+|-.++ ..+
T Consensus 18 ~~~Ly~~~~sp~~~~v~~~L~~~gi 42 (233)
T 3ibh_A 18 KMIIYDTPAGPYPARVRIALAEKNM 42 (233)
T ss_dssp -CEEEECTTCHHHHHHHHHHHHTTC
T ss_pred ceEEecCCCCCccHHHHHHHHhcCC
Confidence 588999888888889998885 444
No 57
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=30.83 E-value=57 Score=16.76 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=24.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|.+|.+.++-+...+ .++++++|++.|....
T Consensus 22 ~~v~f~~~~C~~C~~~~~~l----~~~~~~~~~~~~~~v~ 57 (104)
T 2vim_A 22 IVVDFFAQWCGPCRNIAPKV----EALAKEIPEVEFAKVD 57 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHCTTSEEEEEE
T ss_pred EEEEEECCCCHHHHHhhHHH----HHHHHHCCCCEEEEEe
Confidence 35566777877777666554 4577778888877643
No 58
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=30.26 E-value=57 Score=16.85 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
-|...|.+|.+.++-+...+ .++++++|++.|.....
T Consensus 23 ~~v~f~~~~C~~C~~~~~~~----~~~~~~~~~~~~~~vd~ 59 (105)
T 3m9j_A 23 VVVDFSATWCGPCKMIKPFF----HSLSEKYSNVIFLEVDV 59 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHSTTSEEEEEET
T ss_pred EEEEEECCCChhhHHHHHHH----HHHHHHccCeEEEEEEh
Confidence 35667778887777766554 55778888887766543
No 59
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*
Probab=28.90 E-value=64 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHhCHHHHHHhCCCCeEEEEecCCCCCEEEE
Q psy15302 29 FLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60 (68)
Q Consensus 29 Fl~~~l~~~~~~NP~v~i~v~~~~~~~P~v~a 60 (68)
++..-+|+++++.|+-++.+.-.....|.+..
T Consensus 297 ~~~~~iP~l~~~yP~~~l~l~i~~~~~P~v~~ 328 (456)
T 1ewf_A 297 FFGTFLPEVAKKFPNMKIQIHVSASTPPHLSV 328 (456)
T ss_dssp HHHTTSSSHHHHSTTCBEEEEEECSSCCEEEE
T ss_pred hhhhhchHHHHhCCCCeEEEEEEeCCCCEEEE
Confidence 66778899999999999999888888998875
No 60
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=28.85 E-value=23 Score=22.67 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=21.4
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 27 RDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 27 R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
..++...+.+|.+.+|++.|.+...
T Consensus 105 ~~~l~~~l~~f~~~~P~v~i~l~~~ 129 (324)
T 1al3_A 105 RYALPGVIKGFIERYPRVSLHMHQG 129 (324)
T ss_dssp HHTSHHHHHHHHHHCTEEEEEEEEC
T ss_pred hhHHHHHHHHHHHHCCCCEEEEEEC
Confidence 5667889999999999999998764
No 61
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=28.59 E-value=20 Score=21.11 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=19.6
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
+..++..-+..|.++ |++.|.+..
T Consensus 10 ~~~~l~~~~~~F~~~-p~i~v~~~~ 33 (231)
T 1atg_A 10 FLGTLEQLAGQFAKQ-TGHAVVISS 33 (231)
T ss_dssp GHHHHHHHHHHHHHH-HCCCEEEEE
T ss_pred hHHHHHHHHHHHHhc-cCCeEEEEE
Confidence 466788888899999 999998864
No 62
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*
Probab=28.53 E-value=90 Score=18.50 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=28.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHh-C------------HHHHHHhCC--CCeEEEE
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQ-H------------YVPLKQANP--KFPILVR 49 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~-~------------l~~~~~~NP--~v~i~v~ 49 (68)
.++|.|.+.++-|.-+|-+++. . .+++++.|| +||+++.
T Consensus 5 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~ 58 (211)
T 2wb9_A 5 HFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDV 58 (211)
T ss_dssp EEEEEEESSCGGGHHHHHHHHHTTCCCEEEEECTTTHHHHGGGSGGGCSCEEEE
T ss_pred ceEEEEeCCCCchHHHHHHHHHcCCCceEEEechhhHHHhCcCCCCCCCCEEEE
Confidence 5788888888889999988853 2 367777787 5666654
No 63
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=28.23 E-value=17 Score=24.69 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=21.1
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
+-.++...+..|++.+|++.|.+..
T Consensus 37 ~~~~l~~~~~~f~~~~p~v~i~v~~ 61 (350)
T 1pc3_A 37 LYPLFNLWGPAFHERYPNVTITAQG 61 (350)
T ss_dssp THHHHHHHHHHHHHHSTTEEEECCB
T ss_pred HHHHHHHHHHHHHHHCCCceEEEec
Confidence 5578889999999999999988753
No 64
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=28.18 E-value=42 Score=19.29 Aligned_cols=21 Identities=24% Similarity=0.157 Sum_probs=15.6
Q ss_pred EEEEEecCCCCCCHHHHHHHH
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLA 31 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~ 31 (68)
+-.+.||..|..|.-+-.+|.
T Consensus 75 ~~ivv~C~sG~RS~~aa~~L~ 95 (134)
T 1vee_A 75 TTLYILDKFDGNSELVAELVA 95 (134)
T ss_dssp CEEEEECSSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHH
Confidence 456779999987777666664
No 65
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=27.70 E-value=41 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.3
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 25 GVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 25 G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-+-.+++....+|.++||++.|.+..
T Consensus 46 s~~p~~~~~a~~f~~~~p~v~v~~~~ 71 (279)
T 4gd5_A 46 SVGPVMEAEAEAFKTKKPDVSIEINQ 71 (279)
T ss_dssp TTHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHCCCceEEEee
Confidence 35567788888999999999998864
No 66
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.18 E-value=26 Score=19.55 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|.+|.+.++-+...+.+...+++..++.+.|....
T Consensus 37 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd 76 (140)
T 2dj1_A 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76 (140)
T ss_dssp EEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEEC
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEe
Confidence 3666677788888888877777777777777778776543
No 67
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=27.17 E-value=40 Score=26.42 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhCHHHHHHhCCCCeEEEE
Q psy15302 22 SSSGVRDFLAQHYVPLKQANPKFPILVR 49 (68)
Q Consensus 22 sS~G~R~Fl~~~l~~~~~~NP~v~i~v~ 49 (68)
--.-.|+|+.+.|.++-+.||++.++-.
T Consensus 184 r~p~t~~~~~~~l~~wl~~~p~~dVVRf 211 (759)
T 2zuv_A 184 YHPATRKFVFDTFEQWLKDSPQTDVVRF 211 (759)
T ss_dssp TSHHHHHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 3467899999999999999999987643
No 68
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=27.15 E-value=87 Score=17.66 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=24.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCC
Q psy15302 12 LRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKF 44 (68)
Q Consensus 12 l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v 44 (68)
|.|.. .+-.-+..+|+|+++.+..+.+-.+.+
T Consensus 3 i~I~g-~~ie~t~alr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 3 LNITG-NNVEITEALREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp EEEEC-SSSCCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred EEEEE-ecccCCHHHHHHHHHHHHHHHhhcCCC
Confidence 55554 555679999999999999888777644
No 69
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=27.07 E-value=61 Score=21.12 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 28 DFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
+.++..+..|.++||.++|.+...
T Consensus 45 ~~~~~~~~~Fe~~~Pgi~V~~~~~ 68 (355)
T 3c9h_A 45 PLATPMIEGFQKANPDIAVHYEDM 68 (355)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHCcCeEEEEEeC
Confidence 466778889999999999988653
No 70
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=26.82 E-value=28 Score=22.41 Aligned_cols=28 Identities=4% Similarity=0.043 Sum_probs=22.9
Q ss_pred CHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 23 SSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 23 S~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
+.++++.++.-...|.++||.++|.+..
T Consensus 12 a~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (292)
T 3cfz_A 12 AGSLSVPFEEYEKMFEKEHPNVDVEREP 39 (292)
T ss_dssp EGGGHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHCCCceEEEEe
Confidence 3356788889999999999999998754
No 71
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=26.18 E-value=7.4 Score=24.02 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=15.4
Q ss_pred ceEEEEEecCCCCCCHHHHHH
Q psy15302 9 LKELRIHLCQKGGSSSGVRDF 29 (68)
Q Consensus 9 lk~l~~~yc~~~~sS~G~R~F 29 (68)
-..|||+||+..-++.|-|-|
T Consensus 78 ~Y~VrLhF~ei~~~~~~~rvF 98 (174)
T 2jwp_A 78 EYVLVLKFAEVYFAQSQQKVF 98 (174)
T ss_dssp EEEEEEEEECCSCCCSSSSCE
T ss_pred EEEEEEEEeccccCCCCCeEe
Confidence 345999999987666666655
No 72
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=26.18 E-value=27 Score=18.54 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=27.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|.+|.+.++-+..-+.+...+++..++.+.+....
T Consensus 27 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd 66 (120)
T 1mek_A 27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66 (120)
T ss_dssp EEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEE
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEc
Confidence 3667788888888888877766555555555667665543
No 73
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=26.10 E-value=1.1e+02 Score=21.07 Aligned_cols=44 Identities=16% Similarity=-0.013 Sum_probs=32.2
Q ss_pred cceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 8 KLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 8 qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
...-+.+.|.-+.. +....+.+.+.+.++.+.+|++++++.-.+
T Consensus 72 ~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK 115 (331)
T 3r7w_B 72 SVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHK 115 (331)
T ss_dssp TCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEEC
Confidence 45567788876665 566677777777778888999999886543
No 74
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=25.96 E-value=50 Score=21.01 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=24.7
Q ss_pred CCCCCC--HHHHHHHHhCHHHHHHhCCCCeEEEE
Q psy15302 18 QKGGSS--SGVRDFLAQHYVPLKQANPKFPILVR 49 (68)
Q Consensus 18 ~~~~sS--~G~R~Fl~~~l~~~~~~NP~v~i~v~ 49 (68)
+.|..| ....++|...+.+.+..||++|+..-
T Consensus 129 ~~g~~s~~~~a~~~l~~~~~e~r~~~~~~p~i~l 162 (165)
T 2kg4_A 129 NPHSSQWKDPALSQLICFCRESRYMDQWVPVINL 162 (165)
T ss_dssp CCSSCCCCCHHHHHHHHHHHHHHTTTCSSCEECC
T ss_pred ccccccccchHHHHHHHHHHHhhhccCCCceEeC
Confidence 445444 35668999999999999999998753
No 75
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=25.86 E-value=30 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.020 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhCHHHHHHhCCCCeEEEEecCCCCCEEEEEec
Q psy15302 22 SSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWASGK 63 (68)
Q Consensus 22 sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~~~~P~v~a~Y~ 63 (68)
+..-+|.|-+.--..+++..|+.-........+.-+|...|.
T Consensus 189 ~~~~vr~fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkIfiDy~ 230 (309)
T 2fao_A 189 GWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYL 230 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTEECSCSGGGSTTSEEEECG
T ss_pred CHHHHHHHHHHHHHHHHHhCcceeehhhhHhhCCCCEEEeCc
Confidence 678899999988889999999987766666666777888886
No 76
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=25.82 E-value=41 Score=22.96 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.4
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 26 ~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
-.++++..+.+|.++||+|.|.+...
T Consensus 40 ~~~~~~~~~~~F~~~~pgi~V~~~~~ 65 (458)
T 3uor_A 40 EAEVVAELVADFEKQNPTIHVDVQNI 65 (458)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 45788999999999999999988764
No 77
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=25.56 E-value=79 Score=20.88 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=27.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.+|+|-.-.++ ..-.++++..+.+|.++|| |.|.+...
T Consensus 28 ~~lti~~~~~~---~~~~~~~~~~~~~f~~~~~-i~V~~~~~ 65 (415)
T 3oo8_A 28 GPITFGSNYSD---EAPKAAFASLMQQATTSTT-VPVTVNTT 65 (415)
T ss_dssp CCEEEEECCCS---HHHHHHHHHHHHHHHHHHC-CCEEEEEC
T ss_pred ceEEEEeecCC---cchhHHHHHHHHHHHHhCC-eeEEEEec
Confidence 35666543322 2456788999999999999 99988764
No 78
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=25.49 E-value=56 Score=19.81 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=31.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|-+|.+.++.+..-+.....+++..+|++.|....
T Consensus 150 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd 189 (241)
T 3idv_A 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189 (241)
T ss_dssp EEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEE
T ss_pred EEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEE
Confidence 3556778899989988888877777888888999887654
No 79
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=25.12 E-value=54 Score=19.27 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=13.6
Q ss_pred HHHHhCCCCeEEEEecCC
Q psy15302 36 PLKQANPKFPILVRECSG 53 (68)
Q Consensus 36 ~~~~~NP~v~i~v~~~~~ 53 (68)
.+.+.||++.+.|..+++
T Consensus 30 aI~~DNP~~~v~V~d~pa 47 (103)
T 3ge3_E 30 TAEIDNPGKEITVEDRRA 47 (103)
T ss_dssp HHHHHCTTSCCEEEECSS
T ss_pred HHHhHCcCCEEEEeecCC
Confidence 456889999987766654
No 80
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=24.92 E-value=77 Score=16.36 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=19.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHh
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLAQ 32 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~~ 32 (68)
.+|++.+.++.+.++-++.+|++
T Consensus 6 ~~v~~y~~~~C~~C~~~~~~L~~ 28 (89)
T 2klx_A 6 KEIILYTRPNCPYCKRARDLLDK 28 (89)
T ss_dssp CCEEEESCSCCTTTHHHHHHHHH
T ss_pred ceEEEEECCCChhHHHHHHHHHH
Confidence 46788888899999999999964
No 81
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=24.62 E-value=75 Score=18.07 Aligned_cols=36 Identities=14% Similarity=-0.061 Sum_probs=25.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|.-.|-+|.+.++-|. ..|.++++++|++.|.--.
T Consensus 26 vvv~F~a~wc~~C~~~~----p~l~~la~~~~~v~f~kvd 61 (118)
T 3evi_A 26 VIIHLYRSSIPMCLLVN----QHLSLLARKFPETKFVKAI 61 (118)
T ss_dssp EEEEEECTTSHHHHHHH----HHHHHHHHHCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHH----HHHHHHHHHCCCCEEEEEE
Confidence 35556777877676655 4556789999998876543
No 82
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=24.57 E-value=41 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.071 Sum_probs=38.4
Q ss_pred CCHHHHHHHHhCHHHHHHhCCCCeEEEEecCCCCCEEEEEec-CCCC
Q psy15302 22 SSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWASGK-GTHN 67 (68)
Q Consensus 22 sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~~~~~P~v~a~Y~-nGr~ 67 (68)
+...+|.|-+.--..+++..|+.-........+.-+|...|. |++.
T Consensus 191 ~~~~vr~fa~~~A~~l~~~~Pd~~t~~~~k~~R~gkIfvDy~qN~~g 237 (303)
T 2iru_A 191 SSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGS 237 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTEESSCCGGGCTTSEEEECGGGSTT
T ss_pred CHHHHHHHHHHHHHHHHHHCcceehhhhhHHhCCCCEEEECccCCCC
Confidence 578899999988889999999998777777777788999998 6653
No 83
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel, chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus vernus}
Probab=24.50 E-value=34 Score=22.48 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=17.3
Q ss_pred HhCHHHHHHhCCCCeEEEEecC
Q psy15302 31 AQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 31 ~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
-+.+..+|++||++++++.---
T Consensus 63 ~~~~~~lK~~~~~lKvllSiGG 84 (275)
T 3sim_A 63 PDQISAIKSSHPNVRVAVSLGG 84 (275)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEEEcC
Confidence 3456789999999999986543
No 84
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=24.39 E-value=28 Score=18.24 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=14.2
Q ss_pred HHHhCHHHHHHhCCCCe
Q psy15302 29 FLAQHYVPLKQANPKFP 45 (68)
Q Consensus 29 Fl~~~l~~~~~~NP~v~ 45 (68)
|..+.-+.++..||++.
T Consensus 14 f~~~~r~~~~~~~p~~~ 30 (73)
T 1wxl_A 14 WLNDTRESIKRENPGIK 30 (73)
T ss_dssp HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 66778899999999864
No 85
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycosyl hydrolases family 18; 2.60A {Klebsiella pneumoniae subsp}
Probab=24.29 E-value=51 Score=22.79 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=15.8
Q ss_pred HHHHHHhCCCCeEEEEec
Q psy15302 34 YVPLKQANPKFPILVREC 51 (68)
Q Consensus 34 l~~~~~~NP~v~i~v~~~ 51 (68)
+.++|++||++++++.-.
T Consensus 98 ~~~lk~~~p~lkvllsiG 115 (420)
T 3qok_A 98 LPALRKQNPDLKVLLSVG 115 (420)
T ss_dssp HHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHhCCCCEEEEEEC
Confidence 889999999999998654
No 86
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.03 E-value=43 Score=18.32 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.9
Q ss_pred HHHHhCHHHHHHhCCCCe
Q psy15302 28 DFLAQHYVPLKQANPKFP 45 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~ 45 (68)
-|+...-+.++.+||++.
T Consensus 15 lF~~e~R~~ik~~~P~~~ 32 (81)
T 2d7l_A 15 MWLEENRSNILSDNPDFS 32 (81)
T ss_dssp HHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHCCCCc
Confidence 366788899999999874
No 87
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=23.77 E-value=1.1e+02 Score=19.25 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=21.6
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecCC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECSG 53 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~~ 53 (68)
+.|.+.+-++|-.||.|.|.+...+.
T Consensus 168 ~~i~~~l~~lA~l~pgv~~~l~~~r~ 193 (201)
T 3fv5_A 168 SRLTHVLKAKAVLCPGVEITFKDEIN 193 (201)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEETTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 44678889999999999999977653
No 88
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=23.77 E-value=50 Score=18.95 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=22.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCC-CeEEEEecC
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPK-FPILVRECS 52 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~-v~i~v~~~~ 52 (68)
+|+|.||...+- ..--. ..-.++....|+ +.|.+...+
T Consensus 4 ~V~I~YC~~C~y-~~ra~---~laqeLl~~Fp~~l~V~~~l~p 42 (96)
T 2npb_A 4 AVRVVYSGACGY-KPKYL---QLKEKLEHEFPGCLDICGEGTP 42 (96)
T ss_dssp EEEEECCCCSCH-HHHHH---HHHHHHHHHSBTTEEEEECCCS
T ss_pred EEEEEEcCCCCC-HHHHH---HHHHHHHHhCCcceEEEEEEcC
Confidence 699999998761 11111 223355666677 666665444
No 89
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=23.76 E-value=78 Score=15.72 Aligned_cols=31 Identities=16% Similarity=0.064 Sum_probs=15.7
Q ss_pred CHHHHHHhCCCCeEEEEecCCCCCEEEEEecCCC
Q psy15302 33 HYVPLKQANPKFPILVRECSGVTPVVWASGKGTH 66 (68)
Q Consensus 33 ~l~~~~~~NP~v~i~v~~~~~~~P~v~a~Y~nGr 66 (68)
....+.+.||++.+.|.+... | ++..|.-+|
T Consensus 16 A~~~I~~e~p~v~v~vl~~gs--~-vT~Df~~~R 46 (47)
T 1cq4_A 16 AKKVILQDKPEAQIIVLPVGT--I-VTMGQQQQG 46 (47)
T ss_dssp HHHHHHHHCTTCEEEEEETTC--C-C--------
T ss_pred HHHHHHHHCCCCEEEEeCCCC--C-cCcccCCCC
Confidence 456789999999777754332 2 455665544
No 90
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=23.69 E-value=28 Score=18.21 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.0
Q ss_pred HHHHhCHHHHHHhCCCCeE
Q psy15302 28 DFLAQHYVPLKQANPKFPI 46 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i 46 (68)
-|..+.-+.++.+||++.+
T Consensus 13 lf~~~~r~~~~~~~p~~~~ 31 (73)
T 3nm9_A 13 LWLNSARESIKRENPGIKV 31 (73)
T ss_dssp HHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHCCCCCH
Confidence 3667888999999998753
No 91
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=23.20 E-value=60 Score=21.49 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=22.3
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 25 GVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 25 G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
.-.++++..+.+|.++||.|.|.+...
T Consensus 39 ~~~~~~~~~~~~f~~~~pgi~V~~~~~ 65 (412)
T 3k01_A 39 AEKATYQALAEGFEKEHPKVDVKYVNV 65 (412)
T ss_dssp TTHHHHHHHHHTHHHHCTTEEEEEEEC
T ss_pred cchHHHHHHHHHHHHHCcCeEEEEEec
Confidence 345778888999999999999998753
No 92
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=23.08 E-value=41 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=13.5
Q ss_pred EEEEecCCCCCCHHHHHHHH
Q psy15302 12 LRIHLCQKGGSSSGVRDFLA 31 (68)
Q Consensus 12 l~~~yc~~~~sS~G~R~Fl~ 31 (68)
-.+.||..|..|.-+-.+|.
T Consensus 58 ~ivv~C~~G~rS~~aa~~L~ 77 (103)
T 3iwh_A 58 IYYIVCAGGVRSAKVVEYLE 77 (103)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHH
Confidence 45679998876665555554
No 93
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.05 E-value=41 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.7
Q ss_pred HHHHhCHHHHHHhCCCCe
Q psy15302 28 DFLAQHYVPLKQANPKFP 45 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~ 45 (68)
-|..+.-+.++..||++.
T Consensus 30 lF~~~~r~~~k~~~P~~~ 47 (90)
T 1wgf_A 30 IFSEEKRRQLQEERPELS 47 (90)
T ss_dssp HHHHHTHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 356789999999999864
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=22.79 E-value=86 Score=20.86 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=24.1
Q ss_pred CcceEEEEEecCCCCCCHHHHHHH------------------------HhCHHHHHHhCCCCeEE
Q psy15302 7 SKLKELRIHLCQKGGSSSGVRDFL------------------------AQHYVPLKQANPKFPIL 47 (68)
Q Consensus 7 ~qlk~l~~~yc~~~~sS~G~R~Fl------------------------~~~l~~~~~~NP~v~i~ 47 (68)
.+|++|.+++|+-+ ..|+..+. .+.+..+++.+|++.|.
T Consensus 398 ~~L~~L~l~~N~i~--~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 398 HSLRELDLSNNCLG--DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCCCEEECCSSSCC--HHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCccEEECCCCCCC--HHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 45677777766553 45555544 23456677788888764
No 95
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A {Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Probab=22.70 E-value=46 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=15.7
Q ss_pred CHHHHHHhCCCCeEEEEec
Q psy15302 33 HYVPLKQANPKFPILVREC 51 (68)
Q Consensus 33 ~l~~~~~~NP~v~i~v~~~ 51 (68)
.+..+|++||++++++.--
T Consensus 112 ~l~~lk~~~p~lKvllsiG 130 (419)
T 1itx_A 112 QLNKLKQTNPNLKTIISVG 130 (419)
T ss_dssp HHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEc
Confidence 4678999999999998654
No 96
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=22.01 E-value=73 Score=17.82 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCC
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKF 44 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v 44 (68)
.|.|.. .+-.-+..+|+|+++.+..+.+-.+++
T Consensus 3 ~i~I~g-~~i~~t~al~~~v~~kl~kL~r~~~~i 35 (105)
T 2ywq_A 3 IYKLIG-RNLEITDAIRDYVEKKLARLDRYQDGE 35 (105)
T ss_dssp EEEEEE-ETSCCCHHHHHHHHHHHHGGGGSCSSC
T ss_pred EEEEEE-ecCcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 456664 444568999999999998887777653
No 97
>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}
Probab=22.00 E-value=69 Score=19.38 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCHHHHHHHH-hC----------------HHHHHHhCCC--CeEEE
Q psy15302 12 LRIHLCQKGGSSSGVRDFLA-QH----------------YVPLKQANPK--FPILV 48 (68)
Q Consensus 12 l~~~yc~~~~sS~G~R~Fl~-~~----------------l~~~~~~NP~--v~i~v 48 (68)
|.|.+.+.+++++-+|=.++ .. -+++.+.||. ||+++
T Consensus 3 mkLY~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~ 58 (216)
T 3vk9_A 3 IDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLV 58 (216)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEe
Confidence 46788888888888888774 22 2567778873 45443
No 98
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=21.68 E-value=99 Score=16.15 Aligned_cols=35 Identities=6% Similarity=-0.181 Sum_probs=24.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 12 LRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 12 l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
|...|.+|.+.++-+... +.++++++|++.|....
T Consensus 22 lv~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~vd 56 (105)
T 4euy_A 22 LLFIKTENCGVCDVMLRK----VNYVLENYNYVEKIEIL 56 (105)
T ss_dssp EEEEEESSCHHHHHHHHH----HHHHHHTCTTEEEEEEE
T ss_pred EEEEeCCCCcchHHHHHH----HHHHHHHcCCceEEEEE
Confidence 556677888877776544 56677778887776543
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=21.51 E-value=97 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=23.4
Q ss_pred CcceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEec
Q psy15302 7 SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 7 ~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~~ 51 (68)
++|+.|.++.|+. +..|++. +++.-|++.+.+-..
T Consensus 506 ~~L~~L~l~~~~~--~~~~~~~--------l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 506 ETMRSLWMSSCSV--SFGACKL--------LGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGSSEEEEESSCC--BHHHHHH--------HHHHCTTEEEEEECS
T ss_pred CCCCEEeeeCCCC--CHHHHHH--------HHHhCCCCEEEEecC
Confidence 4677888888876 4555544 456678887777553
No 100
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=21.50 E-value=1.7e+02 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecCC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECSG 53 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~~ 53 (68)
+.|.+.+-++|-.||.|.|.+.-.+.
T Consensus 185 ~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 185 EILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 45788999999999999999977663
No 101
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=21.28 E-value=70 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=14.1
Q ss_pred EEEEEecCCCCCCHHHHHHHH
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLA 31 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~ 31 (68)
+-.+.||..|..|.-+-..|.
T Consensus 81 ~~ivvyC~~G~rS~~aa~~L~ 101 (148)
T 2fsx_A 81 RPVIFLCRSGNRSIGAAEVAT 101 (148)
T ss_dssp CCEEEECSSSSTHHHHHHHHH
T ss_pred CEEEEEcCCChhHHHHHHHHH
Confidence 346889999876665555554
No 102
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=21.05 E-value=55 Score=16.72 Aligned_cols=18 Identities=17% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHhCHHHHHHhCCCCe
Q psy15302 28 DFLAQHYVPLKQANPKFP 45 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~ 45 (68)
-|+...-+.++..||++.
T Consensus 11 ~F~~~~r~~~~~~~p~~~ 28 (71)
T 1ckt_A 11 FFVQTCREEHKKKHPDAS 28 (71)
T ss_dssp HHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 366788889999999875
No 103
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Probab=20.93 E-value=52 Score=24.52 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=16.7
Q ss_pred hCHHHHHHhCCCCeEEEEec
Q psy15302 32 QHYVPLKQANPKFPILVREC 51 (68)
Q Consensus 32 ~~l~~~~~~NP~v~i~v~~~ 51 (68)
..+..+|++||++++++.-.
T Consensus 226 ~~l~~LK~~np~LKvllSIG 245 (574)
T 3oa5_A 226 GGFRLLHEADKELEFSLSIG 245 (574)
T ss_dssp HHHHHHHHHCTTCEEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEEEC
Confidence 56788999999999998653
No 104
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=20.85 E-value=1.1e+02 Score=16.23 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=24.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|.+|.+.++-+...+ .+++++++++.|....
T Consensus 29 vlv~f~a~~C~~C~~~~~~l----~~l~~~~~~v~~~~vd 64 (112)
T 1syr_A 29 VIVDFFAEWCGPCKRIAPFY----EECSKTYTKMVFIKVD 64 (112)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHCTTSEEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHH----HHHHHHcCCCEEEEEE
Confidence 35667777887777766655 4567777888776653
No 105
>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5
Probab=20.69 E-value=1e+02 Score=18.62 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHH-hCH-------------HHHHHhCC---CCeEEE
Q psy15302 10 KELRIHLCQKGGSSSGVRDFLA-QHY-------------VPLKQANP---KFPILV 48 (68)
Q Consensus 10 k~l~~~yc~~~~sS~G~R~Fl~-~~l-------------~~~~~~NP---~v~i~v 48 (68)
.+++|.+...++-|.-+|-+++ ..+ +++.+.|| +||+++
T Consensus 5 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~nP~~g~vP~L~ 60 (230)
T 1gwc_A 5 DDLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSELLLKSNPVHKKIPVLI 60 (230)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHHHHHHSTTTCCSCEEE
T ss_pred CcEEEEeCCCChHHHHHHHHHHHcCCCCeEEecccccCCHHHHhhCCCCCccCEEE
Confidence 4688888888888888888884 332 45667777 366654
No 106
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=20.66 E-value=1.4e+02 Score=19.36 Aligned_cols=26 Identities=0% Similarity=-0.055 Sum_probs=22.5
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecCC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECSG 53 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~~ 53 (68)
+.|.+.+-++|-.||.|.|.+.-.+.
T Consensus 191 ~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 191 NTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred HHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 45889999999999999999977663
No 107
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=20.49 E-value=74 Score=21.14 Aligned_cols=25 Identities=4% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEecC
Q psy15302 28 DFLAQHYVPLKQANPKFPILVRECS 52 (68)
Q Consensus 28 ~Fl~~~l~~~~~~NP~v~i~v~~~~ 52 (68)
+.++..+.+|.++||+|.|.+....
T Consensus 31 ~~~~~~~~~f~~~~p~i~V~~~~~~ 55 (412)
T 2z8f_A 31 TLVNDIVAKWNKQHPDIQVKATKFD 55 (412)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEECS
T ss_pred HHHHHHHHHHHHHCCCceEEEEecC
Confidence 4567778899999999999887654
No 108
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=20.32 E-value=1.1e+02 Score=15.98 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 11 ~l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
-|...|.+|.+.++-+...+ .++++++|++.|....
T Consensus 24 v~v~f~a~wC~~C~~~~~~~----~~~~~~~~~~~~~~vd 59 (107)
T 1gh2_A 24 AVVKFTMRGCGPCLRIAPAF----SSMSNKYPQAVFLEVD 59 (107)
T ss_dssp EEEEEECSSCHHHHHHHHHH----HHHHHHCTTSEEEEEE
T ss_pred EEEEEECCCChhhHHHHHHH----HHHHHHCCCcEEEEEE
Confidence 35667777887777666554 5577777888877643
No 109
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=20.14 E-value=1.1e+02 Score=16.20 Aligned_cols=35 Identities=6% Similarity=0.030 Sum_probs=24.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEe
Q psy15302 12 LRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (68)
Q Consensus 12 l~~~yc~~~~sS~G~R~Fl~~~l~~~~~~NP~v~i~v~~ 50 (68)
|...|.+|.+.++-+... +.++++++|++.|....
T Consensus 28 lv~f~a~wC~~C~~~~p~----l~~l~~~~~~~~~~~vd 62 (109)
T 3f3q_A 28 VVDFYATWCGPCKMIAPM----IEKFSEQYPQADFYKLD 62 (109)
T ss_dssp EEEEECTTCHHHHHHHHH----HHHHHHHCTTSEEEEEE
T ss_pred EEEEECCcCHhHHHHHHH----HHHHHHHCCCCEEEEEE
Confidence 555677788777766544 46778888888877654
Done!