RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15302
         (68 letters)



>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex
          I; NMR {Homo sapiens} SCOP: c.47.1.22
          Length = 102

 Score = 88.3 bits (219), Expect = 3e-25
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query: 9  LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWA 60
          L+E+RIHLCQ+   S GVRDF+ + YV LK+ANP  PIL+RECS V P +WA
Sbjct: 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWA 70


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.30
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 10/45 (22%)

Query: 9   LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKF-----PILV 48
           L  L + L +K  + SG    L Q  +P  +   KF     P+  
Sbjct: 386 LYGLNLTL-RKAKAPSG----LDQSRIPFSERKLKFSNRFLPVAS 425


>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
           ligand-binding domain, anti-parallel alpha- sandwich,
           ecdysone receptor, ECR, gene regulation; HET: FLC 20E
           EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
           1r1k_D* 3ixp_D* 1r20_D*
          Length = 266

 Score = 26.6 bits (59), Expect = 0.45
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 14/52 (26%)

Query: 2   AARFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
           A  FG     L E+R  L  +           +   + LK  N K P  + E
Sbjct: 218 AVIFGKILGILTEIR-TLGMQN----------SNMCISLKLKNRKLPPFLEE 258


>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
           receptor, ECR, USP, hormone/growth factor receptor
           complex; HET: P1A; 3.07A {Bemisia tabaci}
          Length = 310

 Score = 26.3 bits (58), Expect = 0.63
 Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 14/50 (28%)

Query: 4   RFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
            F    S L ELR  L              ++    LK  N K P  + E
Sbjct: 266 IFAKLLSVLTELR-TLGNMN----------SETCFSLKLKNRKVPSFLEE 304


>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
           transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
           a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
           3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
           3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
           3p88_A* ...
          Length = 232

 Score = 26.1 bits (58), Expect = 0.81
 Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 14/50 (28%)

Query: 4   RFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
            F     +L ELR                 A+  +  +  + KF  L+ E
Sbjct: 189 HFACLLGRLTELR-TFNHHH----------AEMLMSWRVNDHKFTPLLCE 227


>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
           ligand binding pocket, hormone/growth factor complex;
           HET: P1A; 2.75A {Tribolium castaneum}
          Length = 248

 Score = 25.8 bits (57), Expect = 1.0
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 11/44 (25%)

Query: 7   SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
           S L ELR  L  +           ++    LK  N K P  + E
Sbjct: 208 SVLTELR-TLGNQN----------SEMCFSLKLKNKKLPPFLAE 240


>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
          cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
          {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
          Length = 677

 Score = 25.0 bits (54), Expect = 2.0
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 27 RDFLAQHYVPLKQANPK 43
           D+    Y  L Q N  
Sbjct: 34 VDYAETRYSRLDQINAA 50


>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
          oxidoreductase; HET: PQQ; 2.60A {Pseudomonas
          aeruginosa} SCOP: b.70.1.1
          Length = 582

 Score = 24.9 bits (54), Expect = 2.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 27 RDFLAQHYVPLKQANPK 43
              AQ + PLKQ N  
Sbjct: 23 MGTHAQRWSPLKQVNAD 39


>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron
          transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A
          {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
          Length = 668

 Score = 24.9 bits (54), Expect = 2.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 27 RDFLAQHYVPLKQANPK 43
          R +  Q + PLKQ +  
Sbjct: 23 RTYAEQRFSPLKQIDAS 39


>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
          oxidoredu; HET: PQQ; 1.50A {Methylophilus
          methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
          4aah_A* 1g72_A*
          Length = 571

 Score = 24.9 bits (54), Expect = 2.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 27 RDFLAQHYVPLKQANPK 43
            + +QH  PL Q N  
Sbjct: 19 GGYYSQHNSPLAQINKS 35


>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
          oxidoreductase, calcium- binding, methanol utilization,
          PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
          b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
          Length = 599

 Score = 24.9 bits (54), Expect = 2.5
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 27 RDFLAQHYVPLKQANPK 43
          +++ + ++  LKQ N  
Sbjct: 19 KNYDSNNFSDLKQINKG 35


>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
          oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas
          putida}
          Length = 689

 Score = 24.5 bits (53), Expect = 2.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 27 RDFLAQHYVPLKQANPK 43
          R +  Q Y PLKQ + +
Sbjct: 27 RTYDEQRYSPLKQISDQ 43


>1zso_A Hypothetical protein; structural genomics, PSI, protein structure
           initiative, STRU genomics of pathogenic protozoa
           consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP:
           b.166.1.1
          Length = 164

 Score = 24.5 bits (53), Expect = 3.1
 Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 15  HLCQKGGSSSGVRDFLAQHYVPLKQANPKF-PILVRECSGVTPVVWASGKG 64
               K  + + V    +  Y   +  N ++      EC G+  + +     
Sbjct: 74  TEYPKYSTINFVNTKNSCSYE--EVNNNEWRDFASFECRGIELIDFFPSNN 122


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,084,509
Number of extensions: 49849
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 13
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)