BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15303
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02370|NDUA2_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Bos taurus GN=NDUFA2 PE=1 SV=2
Length = 99
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
>sp|P0CB80|NDUA2_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
>sp|P0CB79|NDUA2_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Pongo abelii GN=NDUFA2 PE=3 SV=1
Length = 103
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
>sp|O43678|NDUA2_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Homo sapiens GN=NDUFA2 PE=1 SV=3
Length = 99
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
>sp|Q4R5E2|NDUA2_MACFA NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 68
>sp|Q9CQ75|NDUA2_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Mus musculus GN=Ndufa2 PE=1 SV=3
Length = 99
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+R+HLCQ+ S GVRDF+ Q YV LK+A+P PIL+RECS V P +WAR
Sbjct: 16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWAR 68
>sp|Q0MQ92|NDUA2_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3
Length = 99
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+AN PIL+RECS V P +WAR
Sbjct: 16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWAR 68
>sp|Q9FIJ2|NDUA2_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
OS=Arabidopsis thaliana GN=At5g47890 PE=3 SV=1
Length = 97
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
+KELRI LCQ +S+ R F+ ++Y LK NPK PIL+RECSGV P +WAR
Sbjct: 11 MKELRILLCQSSPASAPTRTFVEKNYKDLKSLNPKLPILIRECSGVQPQMWAR 63
>sp|Q07842|NDUA2_NEUCR NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=nuo-10.5 PE=4 SV=1
Length = 94
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 5 FGSKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWARI 62
F LKE+R CQ G S+ R FL ++Y +K+ NP PIL+R+ SG P V+AR
Sbjct: 7 FNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARF 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,627,122
Number of Sequences: 539616
Number of extensions: 900214
Number of successful extensions: 2566
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2557
Number of HSP's gapped (non-prelim): 9
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)