Query psy15303
Match_columns 72
No_of_seqs 101 out of 326
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:37:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3a_A NADH-ubiquinone oxidore 99.9 1E-26 3.5E-31 145.3 8.3 63 3-65 11-75 (102)
2 4gqo_A LMO0859 protein; virule 66.3 7 0.00024 26.8 3.9 29 23-51 39-67 (433)
3 2qsx_A Putative transcriptiona 58.3 9.8 0.00033 23.5 3.2 28 26-53 30-57 (218)
4 3thi_A Protein (thiaminase I); 57.7 14 0.00047 24.8 4.1 37 11-50 2-38 (371)
5 3jv9_A OXYR, transcriptional r 55.6 13 0.00046 22.0 3.4 26 26-51 15-40 (219)
6 4g68_A ABC transporter; transp 53.8 14 0.00047 25.9 3.7 39 10-50 61-100 (456)
7 2y7p_A LYSR-type regulatory pr 53.5 14 0.00048 22.7 3.3 27 26-52 19-45 (218)
8 1elj_A Maltodextrin-binding pr 51.4 19 0.00065 24.3 4.0 26 25-50 17-42 (381)
9 4aq4_A SN-glycerol-3-phosphate 50.5 15 0.00053 24.7 3.4 25 26-50 18-42 (419)
10 1twy_A ABC transporter, peripl 48.6 17 0.00058 22.8 3.2 24 28-51 40-63 (290)
11 4ab5_A Transcriptional regulat 46.8 18 0.0006 21.6 2.9 37 11-52 9-45 (222)
12 1i6a_A OXYR, hydrogen peroxide 46.2 19 0.00066 21.7 3.1 36 11-51 6-41 (219)
13 1ego_A Glutaredoxin; electron 44.3 31 0.001 18.0 3.5 34 11-48 2-35 (85)
14 3hhf_B Transcriptional regulat 44.2 14 0.00049 21.8 2.2 25 26-50 18-42 (213)
15 3onm_A Transcriptional regulat 43.9 20 0.00069 22.0 3.0 26 27-52 39-64 (238)
16 3ho7_A OXYR; beta-alpha-barrel 43.4 22 0.00077 21.3 3.1 37 10-51 11-47 (232)
17 2ql3_A Probable transcriptiona 43.2 14 0.00048 22.0 2.1 36 11-51 6-41 (209)
18 2fyi_A HTH-type transcriptiona 43.1 18 0.00061 22.1 2.6 36 11-51 15-50 (228)
19 1hym_A CMTI-V, hydrolyzed cucu 42.6 22 0.00075 18.6 2.5 19 34-52 22-40 (45)
20 3fzv_A Probable transcriptiona 42.5 22 0.00077 22.6 3.1 37 10-51 95-131 (306)
21 3kos_A HTH-type transcriptiona 41.5 20 0.00067 21.5 2.6 27 26-52 23-49 (219)
22 3ttz_A DNA gyrase subunit B; p 39.5 47 0.0016 21.7 4.4 37 28-64 158-196 (198)
23 3oxn_A Putative transcriptiona 39.1 38 0.0013 20.6 3.7 38 10-52 19-56 (241)
24 2w7y_A FCSSBP, probable sugar 38.8 46 0.0016 22.8 4.4 40 11-50 39-79 (430)
25 2hxr_A HTH-type transcriptiona 38.7 21 0.00071 21.8 2.4 25 27-51 42-66 (238)
26 1xg8_A Hypothetical protein SA 37.4 48 0.0016 20.6 3.8 33 17-52 22-54 (111)
27 3fxq_A LYSR type regulator of 36.6 38 0.0013 21.8 3.5 26 26-51 103-128 (305)
28 2esn_A Probable transcriptiona 36.3 35 0.0012 21.8 3.3 38 10-52 101-138 (310)
29 2jr1_A Virulence regulator; H- 35.7 26 0.00088 20.6 2.3 27 20-46 47-74 (79)
30 2d7c_C RAB11 family-interactin 34.6 12 0.00042 19.4 0.7 21 24-44 18-38 (42)
31 3i3v_A Probable secreted solut 34.2 17 0.00058 24.7 1.6 25 27-51 23-47 (405)
32 3quf_A Extracellular solute-bi 33.3 33 0.0011 23.3 2.9 23 28-50 41-63 (414)
33 1uth_A LYSR-type regulatory pr 32.3 44 0.0015 21.7 3.3 28 25-52 115-142 (315)
34 2jwk_A Protein TOLR; periplasm 32.0 54 0.0018 17.2 3.2 24 30-53 32-55 (74)
35 1ixc_A CBNR, LYSR-type regulat 31.5 32 0.0011 21.7 2.4 37 10-51 91-127 (294)
36 2heu_A Sugar ABC transporter, 31.2 43 0.0015 22.8 3.2 25 27-51 31-55 (401)
37 2uvj_A TOGB, ABC type periplas 30.9 57 0.0019 22.1 3.8 37 11-51 7-43 (408)
38 2hv8_D RAB11 family-interactin 29.7 16 0.00055 20.6 0.7 21 24-44 40-60 (64)
39 3mz1_A Putative transcriptiona 29.3 37 0.0013 21.2 2.4 26 26-51 99-124 (300)
40 3cfx_A UPF0100 protein MA_0280 27.6 44 0.0015 22.0 2.7 27 24-50 13-39 (296)
41 2kg4_A Growth arrest and DNA-d 27.4 41 0.0014 22.1 2.4 31 18-48 129-161 (165)
42 3szp_A Transcriptional regulat 27.2 42 0.0014 20.9 2.4 38 10-52 91-128 (291)
43 2h9b_A HTH-type transcriptiona 27.1 38 0.0013 21.9 2.3 36 11-51 91-126 (312)
44 2b3f_A Glucose-binding protein 26.9 62 0.0021 21.9 3.4 26 26-51 13-38 (400)
45 3ibh_A GST-II, saccharomyces c 26.7 49 0.0017 20.4 2.7 24 11-34 18-42 (233)
46 3cij_A UPF0100 protein AF_0094 25.7 34 0.0012 22.5 1.9 27 24-50 13-39 (295)
47 2wb9_A Glutathione transferase 25.5 1E+02 0.0036 18.6 4.1 39 11-49 5-58 (211)
48 4exl_A PBP 1, phosphate-bindin 24.8 41 0.0014 22.3 2.1 26 26-51 14-39 (265)
49 2jwp_A Malectin, MGC80075; sug 24.7 8.5 0.00029 24.4 -1.3 20 10-29 79-98 (174)
50 4ecf_A ABC-type phosphate tran 24.6 28 0.00097 23.0 1.3 25 27-51 15-39 (264)
51 2p1m_B Transport inhibitor res 24.4 1.8E+02 0.0062 20.4 5.6 34 7-50 506-539 (594)
52 4ay1_A Chitinase-3-like protei 24.1 40 0.0014 23.4 2.0 19 32-50 58-76 (365)
53 3hhg_A Transcriptional regulat 24.1 46 0.0016 21.1 2.2 35 10-49 93-127 (306)
54 2h98_A HTH-type transcriptiona 24.0 53 0.0018 21.5 2.5 36 11-51 91-126 (313)
55 3v26_X ORF3, ORF95, probable s 23.1 1E+02 0.0034 17.9 3.5 32 12-44 3-34 (101)
56 1eu8_A Trehalose/maltose bindi 22.7 76 0.0026 21.4 3.2 27 25-51 15-41 (409)
57 2vim_A Thioredoxin, TRX; thior 22.4 93 0.0032 16.2 3.0 36 11-50 22-57 (104)
58 1ewf_A BPI, bactericidal/perme 22.3 1E+02 0.0035 21.9 3.9 33 29-61 297-329 (456)
59 3cvg_A Putative metal binding 21.8 66 0.0022 21.3 2.7 29 23-51 28-61 (294)
60 2klx_A Glutaredoxin; thioredox 21.7 92 0.0031 16.5 2.9 23 10-32 6-28 (89)
61 3m9j_A Thioredoxin; oxidoreduc 21.5 96 0.0033 16.3 3.0 37 11-51 23-59 (105)
62 3r7w_B Gtpase2, GTP-binding pr 21.3 1.4E+02 0.0047 21.2 4.4 44 7-51 71-114 (331)
63 2cvd_A Glutathione-requiring p 20.9 1.4E+02 0.0048 17.9 4.0 38 11-48 2-54 (198)
64 4gd5_A Phosphate ABC transport 20.8 60 0.0021 21.2 2.3 25 26-50 47-71 (279)
65 3vk9_A Glutathione S-transfera 20.5 71 0.0024 19.8 2.5 37 12-48 3-58 (216)
66 1al3_A Cys regulon transcripti 20.3 46 0.0016 21.7 1.6 26 26-51 104-129 (324)
No 1
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=99.94 E-value=1e-26 Score=145.28 Aligned_cols=63 Identities=56% Similarity=1.021 Sum_probs=56.1
Q ss_pred cccccC--ceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcCCCCCEEEEEecCC
Q psy15303 3 TRFGSK--LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWARIPTI 65 (72)
Q Consensus 3 ~~f~~q--Lk~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~g~~P~l~a~Y~n~ 65 (72)
.+|.+. ||+|+|+||++++||+|+|+||+.+||+||++||+++|+|++++++||+|+|+|+|+
T Consensus 11 ~~l~~~~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G 75 (102)
T 1s3a_A 11 RGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFG 75 (102)
T ss_dssp -------CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSC
T ss_pred hcCCCCCceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCC
Confidence 367776 999999999999999999999999999999999999999999999999999999993
No 2
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=66.29 E-value=7 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=24.2
Q ss_pred CHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 23 SSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 23 S~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
+..-.+++++-+.+|.++||+|.|.+...
T Consensus 39 ~~~~~~~~~~~i~~F~~~~p~i~V~~~~~ 67 (433)
T 4gqo_A 39 NPTQVKYWDEMAKAYEKENPDVTIEVSQM 67 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHCcCeEEEEEEc
Confidence 45566889999999999999999988654
No 3
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=58.27 E-value=9.8 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEcCC
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRECSG 53 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~~g 53 (72)
...+|...+.+|++++|++.+.+.....
T Consensus 30 ~~~~L~~~l~~f~~~~P~i~l~l~~~~~ 57 (218)
T 2qsx_A 30 ASLWLVPNINDFHQRHPNIRVKILTGDG 57 (218)
T ss_dssp HHHTHHHHHHHHHHHCTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 4567889999999999999999987654
No 4
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=57.71 E-value=14 Score=24.77 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
.|++.+ ++.+ ....++++..+.+|.++||++.|.+..
T Consensus 2 tl~v~~--w~~~-~~~~~~~~~~~~~F~~~~p~i~V~~~~ 38 (371)
T 3thi_A 2 TLKVAI--YPYV-PDPARFQAAVLDQWQRQEPGVKLEFTD 38 (371)
T ss_dssp EEEEEC--CSCS-SCHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEEE--eCCC-CCHHHHHHHHHHHHHHhCCCeeEEEEe
Confidence 455555 3322 234788899999999999999998754
No 5
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=55.56 E-value=13 Score=21.99 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=22.1
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
...++...+.+|++++|++.+.+...
T Consensus 15 ~~~~l~~~l~~~~~~~P~i~i~i~~~ 40 (219)
T 3jv9_A 15 APYLLPKLIVSLRRTAPKMPLMLEEN 40 (219)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 34578889999999999999999764
No 6
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=53.75 E-value=14 Score=25.89 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=25.9
Q ss_pred eEEEEEe-cCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 10 KELRIHL-CQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 10 k~L~~~y-C~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
++++|.| ..+++. .-.+.+++.+.+|.++||+|.|.+..
T Consensus 61 ~~vtit~w~~~~~~--~~~~~~~~~i~~F~~~~p~I~V~~~~ 100 (456)
T 4g68_A 61 KKITLTFWNLFTGE--PAKTKVKEIIDQWNKENPNVQIVESV 100 (456)
T ss_dssp --CEEEEEECCCST--THHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCEEEEEeeCCCCc--hHHHHHHHHHHHHHHHCcCeEEEEEE
Confidence 3556655 223322 33567888889999999999998764
No 7
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=53.53 E-value=14 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.2
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
...++..-+..|++++|++.+.+.+..
T Consensus 19 ~~~~lp~~l~~f~~~~P~v~l~l~~~~ 45 (218)
T 2y7p_A 19 EMYFMPPLMEALAQRAPHIQISTLRPN 45 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 456788999999999999999998754
No 8
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=51.44 E-value=19 Score=24.35 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=22.0
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 25 GVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 25 GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
.-.+.+++.+.+|.++||++.|.+..
T Consensus 17 ~~~~~~~~~i~~F~~~~p~i~V~~~~ 42 (381)
T 1elj_A 17 NELEVFQSLAEEYMALCPEVEIVFEQ 42 (381)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45678888999999999999988765
No 9
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=50.47 E-value=15 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
-.+.+++-..+|.++||+|.|.+..
T Consensus 18 ~~~~~~~~i~~F~~~~p~i~V~~~~ 42 (419)
T 4aq4_A 18 LGKEVDSLAQRFNAENPDYKIVPTY 42 (419)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCcCeEEEEEe
Confidence 3477888889999999999987654
No 10
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=48.64 E-value=17 Score=22.84 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=21.3
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 28 DFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 28 ~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.++...+.+|++++|++.+.+...
T Consensus 40 ~~l~~~l~~f~~~~P~i~v~i~~~ 63 (290)
T 1twy_A 40 RIMDVLAEKYNQQHPETYVAVQGV 63 (290)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHHHHHhhCCCceEEEEec
Confidence 688899999999999999998764
No 11
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=46.84 E-value=18 Score=21.58 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=27.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
+|+|-..+.- ...++...+.+|++.+|++.+.+....
T Consensus 9 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~i~i~i~~~~ 45 (222)
T 4ab5_A 9 ELRIAVECHT-----CFDWLMPAMGEFRPMWPQVELDIVSGF 45 (222)
T ss_dssp EEEEECCCTT-----THHHHHHHHHHHHHHSTTEEEEEECCC
T ss_pred eEEEEEehHH-----HHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5666554332 236778889999999999999998754
No 12
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=46.19 E-value=19 Score=21.73 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.|+|-....- ...++..-+.+|++++|++.+.+.+.
T Consensus 6 ~lrIg~~~~~-----~~~~l~~~l~~f~~~~P~v~l~l~~~ 41 (219)
T 1i6a_A 6 PLHIGLIPTV-----GPYLLPHIIPMLHQTFPKLEMYLHEA 41 (219)
T ss_dssp EEEEEECTTT-----HHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred EEEEEeccch-----hhhhhhHHHHHHHHHCCCeEEEEEEC
Confidence 4666654432 34678889999999999999998754
No 13
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=44.29 E-value=31 Score=18.00 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=23.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEE
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILV 48 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v 48 (72)
+|.+.+-+|.+.++-++.++++ ++++++++++..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~----l~~~~~~i~~~~ 35 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEK----LSNERDDFQYQY 35 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH----HHHHHSSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHH----HHhcCCCceEEE
Confidence 4667777888889999988765 444456666554
No 14
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=44.18 E-value=14 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.4
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
...++...+.+|++++|++.+.+..
T Consensus 18 ~~~~l~~~l~~f~~~~P~v~l~i~~ 42 (213)
T 3hhf_B 18 VLHLLAPLAAKFNERYPHIRLSLVS 42 (213)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 4457788999999999999999984
No 15
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=43.91 E-value=20 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 27 RDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 27 R~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
..++...+.+|++++|++.+.+....
T Consensus 39 ~~~l~~~l~~f~~~~P~i~l~i~~~~ 64 (238)
T 3onm_A 39 DTLLPFLLNRVATLYPRLAIDVRVKR 64 (238)
T ss_dssp TTHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEECC
Confidence 45778899999999999999997643
No 16
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=43.37 E-value=22 Score=21.31 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=27.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.+|+|-....- ...++...+.+|++++|++.+.+...
T Consensus 11 g~l~Ig~~~~~-----~~~~l~~~l~~~~~~~P~v~i~~~~~ 47 (232)
T 3ho7_A 11 GRLNIAVLPTI-----APYLLPRVFPIWKKELAGLEIHVSEM 47 (232)
T ss_dssp EEEEEEECTTT-----HHHHHHHHHHHHHHHSTTEEEEEEEC
T ss_pred eeEEEEecccc-----chhhhHHHHHHHHHHCCCcEEEEEeC
Confidence 35666654332 34588899999999999999999754
No 17
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=43.23 E-value=14 Score=22.01 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
+|+|-....- ...++...+.+|++++|++.+.+...
T Consensus 6 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~i~i~l~~~ 41 (209)
T 2ql3_A 6 PIAVGCYPAL-----GPTILPSMLYAFTAEYPRASVEFRED 41 (209)
T ss_dssp EEEEEECGGG-----TTTTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eEEEeechhh-----hhhhHHHHHHHHHHHCCCceEEEEEC
Confidence 4566553322 23567788889999999999998764
No 18
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=43.11 E-value=18 Score=22.13 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.|+|-.. ..-...++..-+.+|++++|++.+.+...
T Consensus 15 ~lrIg~~-----~~~~~~~l~~~l~~f~~~~P~v~l~l~~~ 50 (228)
T 2fyi_A 15 VLTIATT-----HTQARYSLPEVIKAFRELFPEVRLELIQG 50 (228)
T ss_dssp EEEEEEC-----HHHHHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred eEEEeec-----cchHHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 4666552 22345677889999999999999998764
No 19
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=42.61 E-value=22 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHhCCCCeEEEEEcC
Q psy15303 34 YVPLKQANPKFPILVRECS 52 (72)
Q Consensus 34 l~~~k~~NP~v~i~v~~~~ 52 (72)
-..|.+.||++.+.+.+.-
T Consensus 22 ~~~I~~e~P~v~v~vl~~g 40 (45)
T 1hym_A 22 KAIIERQNPNVKAVILEEG 40 (45)
T ss_dssp HHHHHHHCTTCEEEEEECC
T ss_pred HHHHHHHCCCCeEEEecCC
Confidence 3468899999998886543
No 20
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=42.47 E-value=22 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=27.9
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
..|+|-..+. -...++...+.+|++++|++.+.+...
T Consensus 95 g~l~i~~~~~-----~~~~~l~~~l~~f~~~~P~i~i~l~~~ 131 (306)
T 3fzv_A 95 GQIDIGCFET-----VAPLYLPGLIAGFRQAYPGVEIRIRDG 131 (306)
T ss_dssp EEEEEEEEGG-----GHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ceEEEEechh-----hhHHHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3566666432 245788899999999999999998764
No 21
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=41.54 E-value=20 Score=21.51 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.5
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
...++...+.+|++++|++.+.+....
T Consensus 23 ~~~~l~~~l~~f~~~~P~i~l~i~~~~ 49 (219)
T 3kos_A 23 AIGCLFPLLSDFKRSYPHIDLHISTHN 49 (219)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred HHHHHHhHHHHHHHHCCCceEEEEecc
Confidence 345778899999999999999997654
No 22
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=39.48 E-value=47 Score=21.75 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=26.5
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEEcCCCCC--EEEEEecC
Q psy15303 28 DFLAQHYVPLKQANPKFPILVRECSGVTP--VVWARIPT 64 (72)
Q Consensus 28 ~Fl~~~l~~~k~~NP~v~i~v~~~~g~~P--~l~a~Y~n 64 (72)
+.|.+.+-++|-.||.+.|.....+...+ .-...|..
T Consensus 158 ~~l~~rlrelA~ln~gv~i~l~der~~~~~~~~~f~~~g 196 (198)
T 3ttz_A 158 ETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEG 196 (198)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECSSTTSCEEEEECCC-
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeecCCCCcceEEEEcCC
Confidence 35788899999999999999987664332 34455554
No 23
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=39.12 E-value=38 Score=20.64 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=28.1
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
.+|+|-.. ..-...++...+.+|++++|++.+.+....
T Consensus 19 g~l~Ig~~-----~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~ 56 (241)
T 3oxn_A 19 QTFTIATT-----DYAMQTILPFALPRIYQEAPNVSFNFLPLQ 56 (241)
T ss_dssp CEEEEEEC-----SHHHHHTHHHHHHHHHHHCTTCEEEEEECC
T ss_pred ceEEEEec-----hHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 34566553 223556788899999999999999998754
No 24
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=38.83 E-value=46 Score=22.79 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=24.0
Q ss_pred EEEEEecCCCCCCH-HHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 11 ELRIHLCQKGGSSS-GVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 11 ~L~~~yC~~~~sS~-GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
.|++-...++..+. ...+.+++.+.+|.++||++.|.+..
T Consensus 39 ~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~ 79 (430)
T 2w7y_A 39 VLEFYHGYHHSEDEWPVAKTMRDLYDKFAEEHKDSGVEFKP 79 (430)
T ss_dssp EEEEEESCCCCTTTCHHHHHHHHHHHHHHHHC--CCSEEEE
T ss_pred eEEEEEecCCCccchhHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 46665433332222 34567888889999999997776654
No 25
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=38.73 E-value=21 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.0
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 27 RDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 27 R~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
..++...+.+|++++|++.+.+...
T Consensus 42 ~~~l~~~l~~f~~~~P~v~l~~~~~ 66 (238)
T 2hxr_A 42 SYFIGPLMADFYARYPSITLQLQEM 66 (238)
T ss_dssp TTTHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 4567788899999999999998764
No 26
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=37.40 E-value=48 Score=20.60 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.9
Q ss_pred cCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 17 CQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 17 C~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
|=+.|||+-.-+||+ +.++++.|+-+|.++-.-
T Consensus 22 CVnaPSSkeTyEWLq---Aal~RKyp~~~f~~~YID 54 (111)
T 1xg8_A 22 CVNAPTSKDIYDWLQ---PLLKRKYPNISFKYTYID 54 (111)
T ss_dssp GSSSCCHHHHHHHHH---HHHHHHCTTSCEEEEEEE
T ss_pred ccCCCCchhHHHHHH---HHHhCcCCCCceEEEEEe
Confidence 778899999999998 467899999999886543
No 27
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=36.57 E-value=38 Score=21.75 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
...++...+.+|++++|++.|.+...
T Consensus 103 ~~~~l~~~l~~f~~~~P~i~i~l~~~ 128 (305)
T 3fxq_A 103 ALAALPLALASFAREFPDVTVNVRDG 128 (305)
T ss_dssp HHTHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 45678889999999999999999874
No 28
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=36.29 E-value=35 Score=21.84 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
..|+|-..+ .-...++...+.+|++++|++.|.+....
T Consensus 101 ~~l~Ig~~~-----~~~~~~l~~~l~~f~~~~P~i~i~l~~~~ 138 (310)
T 2esn_A 101 RTFVFAATD-----YTAFALLPPLMNRLQHSAPGVRLRLVNAE 138 (310)
T ss_dssp CEEEEECCH-----HHHHHHHHHHHHHHHHHSTTCEEEEECCS
T ss_pred ceEEEEeCh-----HHHHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 457766532 23456778889999999999999998754
No 29
>2jr1_A Virulence regulator; H-NS, DNA biding protein, DNA binding PR; NMR {Xylella fastidiosa}
Probab=35.75 E-value=26 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHH-hCHHHHHHhCCCCeE
Q psy15303 20 GGSSSGVRDFLA-QHYVPLKQANPKFPI 46 (72)
Q Consensus 20 ~~sS~GvR~Fl~-~~l~~~k~~NP~v~i 46 (72)
|-.-+=+.+++. -.|.++|.+||+..|
T Consensus 47 GR~P~Wi~~~l~~~~~k~wk~~~p~~~~ 74 (79)
T 2jr1_A 47 GKIPKPFEAWIGTAAYTAWKAKHPDEKF 74 (79)
T ss_dssp CCCCHHHHHHHHHTTHHHHHHHSSSCSC
T ss_pred CCCCHHHHHHHHHhHHHHHHhhCCCCcC
Confidence 334456788885 699999999999875
No 30
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=34.59 E-value=12 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.5
Q ss_pred HHHHHHHHhCHHHHHHhCCCC
Q psy15303 24 SGVRDFLAQHYVPLKQANPKF 44 (72)
Q Consensus 24 ~GvR~Fl~~~l~~~k~~NP~v 44 (72)
+-+|+||.+-+..+-..+|++
T Consensus 18 ~~Le~YID~LL~~VmE~~P~i 38 (42)
T 2d7c_C 18 FRLQDYIDRIIVAIMETNPSI 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 31
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=34.18 E-value=17 Score=24.67 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=21.3
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 27 RDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 27 R~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.++++..+.+|.++||++.|.+...
T Consensus 23 ~~~~~~~~~~f~~~~p~i~V~~~~~ 47 (405)
T 3i3v_A 23 SPTYLAAVDRFREENPGVKIKNLVN 47 (405)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred hHHHHHHHHHHHHHCCCcEEEEEEC
Confidence 5777888899999999999998643
No 32
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=33.26 E-value=33 Score=23.25 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.1
Q ss_pred HHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 28 DFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 28 ~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
+.++..+.+|.++||++.|.+..
T Consensus 41 ~~~~~~~~~f~~~~p~i~V~~~~ 63 (414)
T 3quf_A 41 NQIGEVVKGFEKKNPDITLDVQY 63 (414)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hHHHHHHHHHHHHCcCeEEEEEe
Confidence 57788889999999999998875
No 33
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=32.31 E-value=44 Score=21.71 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=22.7
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 25 GVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 25 GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
....++...+.+|.+++|++.+.+....
T Consensus 115 ~~~~~l~~~l~~f~~~~P~v~l~l~~~~ 142 (315)
T 1uth_A 115 GEMYFMPPLMEALAQRAPHIQISTLRPN 142 (315)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 3456778888999999999999987643
No 34
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=32.00 E-value=54 Score=17.17 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.2
Q ss_pred HHhCHHHHHHhCCCCeEEEEEcCC
Q psy15303 30 LAQHYVPLKQANPKFPILVRECSG 53 (72)
Q Consensus 30 l~~~l~~~k~~NP~v~i~v~~~~g 53 (72)
|...+..+.+.||+.++.|+-.+.
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~ 55 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKE 55 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHHHHHhhCCCceEEEEcCCC
Confidence 344566777889999999987664
No 35
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=31.46 E-value=32 Score=21.72 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=27.6
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
..|+|-..+.-. ..++...+.+|.+++|++.+.+...
T Consensus 91 g~l~Ig~~~~~~-----~~~l~~~l~~f~~~~P~i~l~~~~~ 127 (294)
T 1ixc_A 91 GELSVAYFGTPI-----YRSLPLLLRAFLTSTPTATVSLTHM 127 (294)
T ss_dssp EEEEEEECSGGG-----GTHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred ceEEEEEccchh-----HHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 457776654322 3577888899999999999998764
No 36
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=31.19 E-value=43 Score=22.75 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 27 RDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 27 R~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.+.++..+.+|.++||++.|.+...
T Consensus 31 ~~~~~~~~~~f~~~~p~i~V~~~~~ 55 (401)
T 2heu_A 31 TKTLEEITRDFEKENPKIKVKVVNV 55 (401)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHCcCeEEEEEeC
Confidence 4778888899999999999887653
No 37
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=30.85 E-value=57 Score=22.09 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=25.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
+|+|.+ |++ ..-.+.+++.+.+|.++||++.|.+...
T Consensus 7 ~l~i~~--W~~--~~~~~~~~~~~~~f~~~~p~i~V~~~~~ 43 (408)
T 2uvj_A 7 NLRMSW--WGG--NGRHQVTLKALEEFHKQHPNINVKAEYT 43 (408)
T ss_dssp EEEEEE--ECC--HHHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EEEEEE--ECC--cchHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 455543 432 3345777888899999999999887653
No 38
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=29.74 E-value=16 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=18.5
Q ss_pred HHHHHHHHhCHHHHHHhCCCC
Q psy15303 24 SGVRDFLAQHYVPLKQANPKF 44 (72)
Q Consensus 24 ~GvR~Fl~~~l~~~k~~NP~v 44 (72)
+=+|+||.+-+..+-..+|++
T Consensus 40 ~~Le~YID~LL~~ImE~~Psi 60 (64)
T 2hv8_D 40 FRLQDYIDRIIVAIMETNPSI 60 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHcCCch
Confidence 568999999999999999975
No 39
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=29.33 E-value=37 Score=21.23 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=22.1
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
...++...+.+|.+++|++.+.+...
T Consensus 99 ~~~~l~~~l~~f~~~~P~v~i~~~~~ 124 (300)
T 3mz1_A 99 ANLVIIPALPEFHKKYPDIQIDLGVS 124 (300)
T ss_dssp HHHTHHHHHHHHHHHCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 34677889999999999999999764
No 40
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=27.60 E-value=44 Score=21.99 Aligned_cols=27 Identities=4% Similarity=0.054 Sum_probs=22.5
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 24 SGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 24 ~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
.++++.++.-...|.++||++.|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (296)
T 3cfx_A 13 GSLSVPFEELEAEFEAQHPGVDVQREA 39 (296)
T ss_dssp GGGHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 457788888889999999999998754
No 41
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=27.37 E-value=41 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=24.7
Q ss_pred CCCCCC--HHHHHHHHhCHHHHHHhCCCCeEEE
Q psy15303 18 QKGGSS--SGVRDFLAQHYVPLKQANPKFPILV 48 (72)
Q Consensus 18 ~~~~sS--~GvR~Fl~~~l~~~k~~NP~v~i~v 48 (72)
+.+..| ....++|...+.+.+..||++|+..
T Consensus 129 ~~g~~s~~~~a~~~l~~~~~e~r~~~~~~p~i~ 161 (165)
T 2kg4_A 129 NPHSSQWKDPALSQLICFCRESRYMDQWVPVIN 161 (165)
T ss_dssp CCSSCCCCCHHHHHHHHHHHHHHTTTCSSCEEC
T ss_pred ccccccccchHHHHHHHHHHHhhhccCCCceEe
Confidence 555554 3667999999999999999999864
No 42
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=27.16 E-value=42 Score=20.91 Aligned_cols=38 Identities=11% Similarity=0.173 Sum_probs=28.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEcC
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECS 52 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~~ 52 (72)
.+|+|-..+.- ...++...+.+|++.+|++.+.+....
T Consensus 91 ~~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~i~~~~~~ 128 (291)
T 3szp_A 91 GRIRISAPSNL-----TKRMMMPMFNAFMEKYPDIHIELMMSN 128 (291)
T ss_dssp EEEEEEEETTT-----HHHHTHHHHHHHHHHCTTEEEEEEEEC
T ss_pred eEEEEeccHHH-----HHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 35777664432 346788899999999999999987543
No 43
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=27.05 E-value=38 Score=21.92 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.|+|-..+.- ...++...+.+|++++|++.|.+...
T Consensus 91 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~i~l~~~ 126 (312)
T 2h9b_A 91 TIRIGFVGSL-----LFGLLPRIIHLYRQAHPNLRIELYEM 126 (312)
T ss_dssp EEEEEECGGG-----GGTTHHHHHHHHHHTCTTCEEEEEEC
T ss_pred eEEEEechhh-----hHhhHHHHHHHHHHHCCCcEEEEEeC
Confidence 5666654332 13567788899999999999998763
No 44
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=26.95 E-value=62 Score=21.93 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
-.++++..+.+|.++||++.|.+...
T Consensus 13 ~~~~~~~~~~~f~~~~p~i~V~~~~~ 38 (400)
T 2b3f_A 13 EGPALEALIRLYKQKYPGVEVINATV 38 (400)
T ss_dssp GCHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCceEEEEec
Confidence 34778888889999999999988654
No 45
>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*
Probab=26.75 E-value=49 Score=20.41 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=18.9
Q ss_pred EEEEEecCCCCCCHHHHHHHH-hCH
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLA-QHY 34 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~-~~l 34 (72)
+++|.+...++-|.-+|-.++ ..+
T Consensus 18 ~~~Ly~~~~sp~~~~v~~~L~~~gi 42 (233)
T 3ibh_A 18 KMIIYDTPAGPYPARVRIALAEKNM 42 (233)
T ss_dssp -CEEEECTTCHHHHHHHHHHHHTTC
T ss_pred ceEEecCCCCCccHHHHHHHHhcCC
Confidence 588999999888999998885 444
No 46
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=25.66 E-value=34 Score=22.48 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 24 SGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 24 ~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
.++++.++.-...|.++||++.|.+..
T Consensus 13 ~s~~~~~~~l~~~F~~~~~gi~V~~~~ 39 (295)
T 3cij_A 13 GSLTEPMKAFKRAFEEKHPNVEVQTEA 39 (295)
T ss_dssp GGGHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 346788888899999999999998754
No 47
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*
Probab=25.51 E-value=1e+02 Score=18.63 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHh-C------------HHHHHHhCC--CCeEEEE
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQ-H------------YVPLKQANP--KFPILVR 49 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~-~------------l~~~k~~NP--~v~i~v~ 49 (72)
.++|.+.+.++-|.-+|-.++. . .+++++.|| +||+++.
T Consensus 5 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~~ 58 (211)
T 2wb9_A 5 HFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMDQWPTIKPTLPGGRVPLLDV 58 (211)
T ss_dssp EEEEEEESSCGGGHHHHHHHHHTTCCCEEEEECTTTHHHHGGGSGGGCSCEEEE
T ss_pred ceEEEEeCCCCchHHHHHHHHHcCCCceEEEechhhHHHhCcCCCCCCCCEEEE
Confidence 5789998889999999988853 2 356777777 4666654
No 48
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=24.79 E-value=41 Score=22.27 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=21.5
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
+-.++...+.+|.+++|++.|.+...
T Consensus 14 ~~~~~~~~~~~F~~~~P~v~i~v~~~ 39 (265)
T 4exl_A 14 LQPLVEVAADEFGTIHVGKTVNVQGG 39 (265)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEeeC
Confidence 34677888999999999999988653
No 49
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=24.66 E-value=8.5 Score=24.36 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=16.0
Q ss_pred eEEEEEecCCCCCCHHHHHH
Q psy15303 10 KELRIHLCQKGGSSSGVRDF 29 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~F 29 (72)
..||||||+..-++.|-|-|
T Consensus 79 Y~VrLhF~ei~~~~~~~rvF 98 (174)
T 2jwp_A 79 YVLVLKFAEVYFAQSQQKVF 98 (174)
T ss_dssp EEEEEEEECCSCCCSSSSCE
T ss_pred EEEEEEEeccccCCCCCeEe
Confidence 45999999998777776665
No 50
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=24.58 E-value=28 Score=22.99 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=21.2
Q ss_pred HHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 27 RDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 27 R~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
-.++...+..|++++|++.|.+...
T Consensus 15 ~~~l~~~~~~f~~~~P~v~i~v~~~ 39 (264)
T 4ecf_A 15 QPLVEAAGEQYTGEHLGTFINVQGG 39 (264)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeC
Confidence 4678888999999999999988653
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=24.42 E-value=1.8e+02 Score=20.40 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=22.9
Q ss_pred cCceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 7 SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 7 ~qLk~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
++|++|.++.|+. +..|++. +++.-|++.+.+-.
T Consensus 506 ~~L~~L~l~~~~~--~~~~~~~--------l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 506 ETMRSLWMSSCSV--SFGACKL--------LGQKMPKLNVEVID 539 (594)
T ss_dssp GGSSEEEEESSCC--BHHHHHH--------HHHHCTTEEEEEEC
T ss_pred CCCCEEeeeCCCC--CHHHHHH--------HHHhCCCCEEEEec
Confidence 4677888888876 4555544 45667888777654
No 52
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=24.15 E-value=40 Score=23.38 Aligned_cols=19 Identities=42% Similarity=0.520 Sum_probs=16.0
Q ss_pred hCHHHHHHhCCCCeEEEEE
Q psy15303 32 QHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 32 ~~l~~~k~~NP~v~i~v~~ 50 (72)
+.+.++|++||++++++.-
T Consensus 58 ~~~~~lK~~~p~lKvllSi 76 (365)
T 4ay1_A 58 QTINSLKTKNPKLKILLSI 76 (365)
T ss_dssp HHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHHHHCCCCEEEEEE
Confidence 4567899999999999865
No 53
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=24.05 E-value=46 Score=21.06 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=25.7
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEE
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVR 49 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~ 49 (72)
.+|+|-.. ..-...++...+.+|.+.+|++.|.+.
T Consensus 93 g~l~I~~~-----~~~~~~~l~~~l~~f~~~~P~v~i~l~ 127 (306)
T 3hhg_A 93 GVLSVDSA-----MPMVLHLLAPLAAKFNERYPHIRLSLV 127 (306)
T ss_dssp EEEEEEBC-----HHHHHHTHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEcc-----HHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35666442 222356778899999999999999997
No 54
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=23.96 E-value=53 Score=21.46 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.|+|-....- ...++...+.+|++++|++.+.+...
T Consensus 91 ~l~Ig~~~~~-----~~~~l~~~l~~f~~~~P~v~l~l~~~ 126 (313)
T 2h98_A 91 TLRIGYVSSL-----LYGLLPEIIYLFRQQNPEIHIELIEC 126 (313)
T ss_dssp EEEEEECGGG-----GGTTHHHHHHHHHHHCTTSEEEEEEC
T ss_pred EEEEEechHh-----HHhHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5666654322 13577888899999999999998754
No 55
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=23.10 E-value=1e+02 Score=17.88 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCC
Q psy15303 12 LRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKF 44 (72)
Q Consensus 12 L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v 44 (72)
|.|.. .+-.-+..+|+|+++.+..+.+-.+.+
T Consensus 3 i~I~g-~~ie~t~alr~~ve~Kl~kL~k~~d~i 34 (101)
T 3v26_X 3 LNITG-NNVEITEALREFVTAKFAKLEQYFDRI 34 (101)
T ss_dssp EEEEC-SSSCCCHHHHHHHHHHHHHHHTTCSCC
T ss_pred EEEEE-ecccCCHHHHHHHHHHHHHHHhhcCCC
Confidence 45553 667789999999999999988876654
No 56
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=22.72 E-value=76 Score=21.43 Aligned_cols=27 Identities=4% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 25 GVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 25 GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
.-.+.++..+.+|.++||++.|.+...
T Consensus 15 ~~~~~~~~~~~~f~~~~p~i~V~~~~~ 41 (409)
T 1eu8_A 15 NEIEYWKGVIAEFEKKYPGVTVELKRQ 41 (409)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHCCCeEEEEEEC
Confidence 344678888899999999999988654
No 57
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=22.41 E-value=93 Score=16.25 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
-|...|.+|.+.++-+...+ .++++++|++.|..-.
T Consensus 22 ~~v~f~~~~C~~C~~~~~~l----~~~~~~~~~~~~~~v~ 57 (104)
T 2vim_A 22 IVVDFFAQWCGPCRNIAPKV----EALAKEIPEVEFAKVD 57 (104)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHCTTSEEEEEE
T ss_pred EEEEEECCCCHHHHHhhHHH----HHHHHHCCCCEEEEEe
Confidence 35567788888777776655 4577777888776544
No 58
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*
Probab=22.31 E-value=1e+02 Score=21.92 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHhCHHHHHHhCCCCeEEEEEcCCCCCEEEEE
Q psy15303 29 FLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61 (72)
Q Consensus 29 Fl~~~l~~~k~~NP~v~i~v~~~~g~~P~l~a~ 61 (72)
++..-+|+++++.|+-++.+.-.....|.+...
T Consensus 297 ~~~~~iP~l~~~yP~~~l~l~i~~~~~P~v~~~ 329 (456)
T 1ewf_A 297 FFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQ 329 (456)
T ss_dssp HHHTTSSSHHHHSTTCBEEEEEECSSCCEEEEE
T ss_pred hhhhhchHHHHhCCCCeEEEEEEeCCCCEEEEe
Confidence 667788999999999999998888889988753
No 59
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=21.80 E-value=66 Score=21.31 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=21.9
Q ss_pred CHHHHHHHHhCHHHHHHh---C--CCCeEEEEEc
Q psy15303 23 SSGVRDFLAQHYVPLKQA---N--PKFPILVREC 51 (72)
Q Consensus 23 S~GvR~Fl~~~l~~~k~~---N--P~v~i~v~~~ 51 (72)
|.....++..-+.+|+++ + |++.|.+...
T Consensus 28 ~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~ 61 (294)
T 3cvg_A 28 GAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKS 61 (294)
T ss_dssp HHHHHTHHHHHHHHHHHHHHSCC---CEEEEEEC
T ss_pred cchhHHHHHHHHHHHHhhhcccCCCCeEEEEEeC
Confidence 344567889999999999 9 9999998764
No 60
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=21.71 E-value=92 Score=16.46 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCCCHHHHHHHHh
Q psy15303 10 KELRIHLCQKGGSSSGVRDFLAQ 32 (72)
Q Consensus 10 k~L~~~yC~~~~sS~GvR~Fl~~ 32 (72)
.++++.+..+++.++-++.++++
T Consensus 6 ~~v~~y~~~~C~~C~~~~~~L~~ 28 (89)
T 2klx_A 6 KEIILYTRPNCPYCKRARDLLDK 28 (89)
T ss_dssp CCEEEESCSCCTTTHHHHHHHHH
T ss_pred ceEEEEECCCChhHHHHHHHHHH
Confidence 46888888999999999999964
No 61
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=21.52 E-value=96 Score=16.28 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
-|...|.+|.+.++-+...+ .++++++|++.+..-..
T Consensus 23 ~~v~f~~~~C~~C~~~~~~~----~~~~~~~~~~~~~~vd~ 59 (105)
T 3m9j_A 23 VVVDFSATWCGPCKMIKPFF----HSLSEKYSNVIFLEVDV 59 (105)
T ss_dssp EEEEEECTTCHHHHHHHHHH----HHHHHHSTTSEEEEEET
T ss_pred EEEEEECCCChhhHHHHHHH----HHHHHHccCeEEEEEEh
Confidence 45667888888887776655 45777888877766543
No 62
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=21.35 E-value=1.4e+02 Score=21.19 Aligned_cols=44 Identities=16% Similarity=-0.013 Sum_probs=32.5
Q ss_pred cCceEEEEEecCCCCCCHHHHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 7 SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 7 ~qLk~L~~~yC~~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
+...-+.+.|.-+.. +....+.+.+.+.++++.+|++++++--.
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgN 114 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIH 114 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEE
Confidence 455667788876665 66677777777777888899999887543
No 63
>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*
Probab=20.92 E-value=1.4e+02 Score=17.86 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=27.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHh-C------------HHHHHHhCCC--CeEEE
Q psy15303 11 ELRIHLCQKGGSSSGVRDFLAQ-H------------YVPLKQANPK--FPILV 48 (72)
Q Consensus 11 ~L~~~yC~~~~sS~GvR~Fl~~-~------------l~~~k~~NP~--v~i~v 48 (72)
+++|.|.+.++.|.-+|-.++. . -+++++.||. ||+++
T Consensus 2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~P~g~vP~L~ 54 (198)
T 2cvd_A 2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILE 54 (198)
T ss_dssp CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGHHHHHTTSTTSCSCEEE
T ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCceEEEeCHHHHHHhccCCCCCCCCEEE
Confidence 4678888889999999988853 2 2567778874 44443
No 64
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=20.77 E-value=60 Score=21.22 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=20.6
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEE
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVRE 50 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~ 50 (72)
+-.+++..-.+|.++||++.|.+..
T Consensus 47 ~~p~~~~~a~~f~~~~p~v~v~~~~ 71 (279)
T 4gd5_A 47 VGPVMEAEAEAFKTKKPDVSIEINQ 71 (279)
T ss_dssp THHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCceEEEee
Confidence 4567777888999999999998864
No 65
>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}
Probab=20.45 E-value=71 Score=19.79 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.8
Q ss_pred EEEEecCCCCCCHHHHHHHH-hC----------------HHHHHHhCCC--CeEEE
Q psy15303 12 LRIHLCQKGGSSSGVRDFLA-QH----------------YVPLKQANPK--FPILV 48 (72)
Q Consensus 12 L~~~yC~~~~sS~GvR~Fl~-~~----------------l~~~k~~NP~--v~i~v 48 (72)
++|.+...|++|+-+|=.++ .. -+++.+.||. ||+++
T Consensus 3 mkLY~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~ 58 (216)
T 3vk9_A 3 IDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLV 58 (216)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEE
T ss_pred EEEEeCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEe
Confidence 57888889888999998774 22 2567778874 44443
No 66
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.29 E-value=46 Score=21.70 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHhCHHHHHHhCCCCeEEEEEc
Q psy15303 26 VRDFLAQHYVPLKQANPKFPILVREC 51 (72)
Q Consensus 26 vR~Fl~~~l~~~k~~NP~v~i~v~~~ 51 (72)
...++...+.+|.+.+|++.+.+...
T Consensus 104 ~~~~l~~~l~~f~~~~P~v~i~l~~~ 129 (324)
T 1al3_A 104 ARYALPGVIKGFIERYPRVSLHMHQG 129 (324)
T ss_dssp HHHTSHHHHHHHHHHCTEEEEEEEEC
T ss_pred hhhHHHHHHHHHHHHCCCCEEEEEEC
Confidence 35667888999999999999988764
Done!