RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15303
(72 letters)
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex
I; NMR {Homo sapiens} SCOP: c.47.1.22
Length = 102
Score = 91.8 bits (228), Expect = 2e-26
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
L+E+RIHLCQ+ S GVRDF+ + YV LK+ANP PIL+RECS V P +WAR
Sbjct: 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.33
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 9 LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKF-----PILV 48
L L + L +K + SG L Q +P + KF P+
Sbjct: 386 LYGLNLTL-RKAKAPSG----LDQSRIPFSERKLKFSNRFLPVAS 425
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor
ligand-binding domain, anti-parallel alpha- sandwich,
ecdysone receptor, ECR, gene regulation; HET: FLC 20E
EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB:
1r1k_D* 3ixp_D* 1r20_D*
Length = 266
Score = 26.2 bits (58), Expect = 0.72
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 14/52 (26%)
Query: 2 ATRFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
A FG L E+R L + + + LK N K P + E
Sbjct: 218 AVIFGKILGILTEIR-TLGMQN----------SNMCISLKLKNRKLPPFLEE 258
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 25.9 bits (57), Expect = 1.1
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 14/51 (27%)
Query: 3 TRFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
T F S L ELR L ++ LK N K P + E
Sbjct: 265 TIFAKLLSVLTELR-TLGNMN----------SETCFSLKLKNRKVPSFLEE 304
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP:
b.169.1.1 b.169.1.1
Length = 345
Score = 26.0 bits (56), Expect = 1.2
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 16 LCQKGGSSSGVRDFLAQHY--VPLKQA-NPKFPILVRECSGVTPVVWARIPTIGCLGFL 71
L + Y P K N + LVR C TPV+ LG++
Sbjct: 79 LTATEQDPTEQFKKTGFWYEWRPYKDRVNDQLLQLVR-CGQSTPVIMKTKDGKDLLGYI 136
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain,
transcription; HET: FEX; 1.80A {Homo sapiens} SCOP:
a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A*
3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A*
3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A*
3p88_A* ...
Length = 232
Score = 25.4 bits (56), Expect = 1.5
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 3 TRFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
F +L ELR A+ + + + KF L+ E
Sbjct: 188 QHFACLLGRLTELR-TFNHHH----------AEMLMSWRVNDHKFTPLLCE 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 25.4 bits (55), Expect = 1.8
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 27 RDFLAQHYVPLKQANPK 43
D+ Y L Q N
Sbjct: 34 VDYAETRYSRLDQINAA 50
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo
ligand binding pocket, hormone/growth factor complex;
HET: P1A; 2.75A {Tribolium castaneum}
Length = 248
Score = 25.0 bits (55), Expect = 1.9
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 14/52 (26%)
Query: 2 ATRFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRE 50
T F S L ELR L + ++ LK N K P + E
Sbjct: 200 GTIFAKLLSVLTELR-TLGNQN----------SEMCFSLKLKNKKLPPFLAE 240
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
oxidoreductase; HET: PQQ; 2.60A {Pseudomonas
aeruginosa} SCOP: b.70.1.1
Length = 582
Score = 25.3 bits (55), Expect = 2.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 27 RDFLAQHYVPLKQANPK 43
AQ + PLKQ N
Sbjct: 23 MGTHAQRWSPLKQVNAD 39
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron
transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A
{Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 25.3 bits (55), Expect = 2.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 27 RDFLAQHYVPLKQANPK 43
R + Q + PLKQ +
Sbjct: 23 RTYAEQRFSPLKQIDAS 39
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
oxidoredu; HET: PQQ; 1.50A {Methylophilus
methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
4aah_A* 1g72_A*
Length = 571
Score = 25.3 bits (55), Expect = 2.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 27 RDFLAQHYVPLKQANPK 43
+ +QH PL Q N
Sbjct: 19 GGYYSQHNSPLAQINKS 35
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 25.3 bits (55), Expect = 2.2
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 27 RDFLAQHYVPLKQANPK 43
+++ + ++ LKQ N
Sbjct: 19 KNYDSNNFSDLKQINKG 35
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas
putida}
Length = 689
Score = 25.3 bits (55), Expect = 2.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 27 RDFLAQHYVPLKQANPK 43
R + Q Y PLKQ + +
Sbjct: 27 RTYDEQRYSPLKQISDQ 43
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, STRU genomics of pathogenic protozoa
consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP:
b.166.1.1
Length = 164
Score = 24.5 bits (53), Expect = 3.5
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 15 HLCQKGGSSSGVRDFLAQHYVPLKQANPKF-PILVRECSGVTPVVW 59
K + + V + Y + N ++ EC G+ + +
Sbjct: 74 TEYPKYSTINFVNTKNSCSYE--EVNNNEWRDFASFECRGIELIDF 117
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 23.5 bits (51), Expect = 7.1
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 1 MATRFG--SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVV 58
M+ + SK + + + VR NPKF L+ E SG +
Sbjct: 1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFL 60
Query: 59 WARIPTIG 66
+ G
Sbjct: 61 VLPLGKTG 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.461
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,142,533
Number of extensions: 52846
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 15
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)