RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15303
         (72 letters)



>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8
          subunit,  CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 86.7 bits (215), Expect = 4e-25
 Identities = 33/53 (62%), Positives = 41/53 (77%)

Query: 9  LKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVTPVVWAR 61
          L+E+RIHLCQ+   S GVRDF+ + YV LK+ANP  PIL+RECS V P +WAR
Sbjct: 2  LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWAR 54


>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 292

 Score = 24.3 bits (52), Expect = 1.3
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%)

Query: 3   TRFG---SKLKELRIHLCQKGGSSSGVRDFLAQHYVPLKQANPKFPILVRECSGVT 55
             F    + L ELR  +  +            Q  + ++  +P    L++E  G+T
Sbjct: 247 FLFLKIMAMLTELR-SINAQH----------TQRLLRIQDIHPFATPLMQELFGIT 291


>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
          {Methylobacterium extorquens [TaxId: 408]}
          Length = 596

 Score = 24.5 bits (52), Expect = 1.3
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 27 RDFLAQHYVPLKQANPK 43
          +++ + ++  LKQ N  
Sbjct: 19 KNYDSNNFSDLKQINKG 35


>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 582

 Score = 24.2 bits (51), Expect = 2.0
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 27 RDFLAQHYVPLKQANPK 43
              AQ + PLKQ N  
Sbjct: 23 MGTHAQRWSPLKQVNAD 39


>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
          {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 571

 Score = 23.7 bits (50), Expect = 2.5
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 27 RDFLAQHYVPLKQANPK 43
            + +QH  PL Q N  
Sbjct: 19 GGYYSQHNSPLAQINKS 35


>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
          N-terminal domain {Comamonas testosteroni [TaxId: 285]}
          Length = 573

 Score = 23.8 bits (50), Expect = 2.7
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 27 RDFLAQHYVPLKQANPK 43
           D+    Y  L Q N  
Sbjct: 34 VDYAETRYSRLDQINAA 50


>d1zsoa1 b.166.1.1 (A:1-156) Hypothetical protein MAL13P1.257
           {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
          Length = 156

 Score = 23.1 bits (50), Expect = 3.0
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 16  LCQKGGSSSGVRDFLAQHYVPLKQANPKF-PILVRECSGVTPVVW 59
              K  + + V    +  Y   +  N ++      EC G+  + +
Sbjct: 67  EYPKYSTINFVNTKNSCSY--EEVNNNEWRDFASFECRGIELIDF 109


>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
          N-terminal domain {Pseudomonas putida, hk5 [TaxId:
          303]}
          Length = 560

 Score = 23.4 bits (49), Expect = 3.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 27 RDFLAQHYVPLKQANPK 43
          R +  Q + PLKQ +  
Sbjct: 23 RTYAEQRFSPLKQIDAS 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.461 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,238
Number of extensions: 10441
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.6 bits)