BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15304
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 69 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 128
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TND ATYKG + V+ +G +Q+++N IK
Sbjct: 129 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 163
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 72 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 131
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TND ATYKG + V+ +G +Q+++N IK
Sbjct: 132 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 166
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 72 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 131
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TND ATYKG + V+ +G +Q+++N IK
Sbjct: 132 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 166
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS +VE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 73 MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 132
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K ++ A +K + + G ++ +SL NI
Sbjct: 133 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 169
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 1 MRGVTSEAMVMCASTPDKVE-ILAPPSAAKPG 31
MRG TSE M++CA T D E +L P P
Sbjct: 74 MRGETSECMLLCAETDDGSESVLLTPERMMPA 105
>pdb|1UXY|A Chain A, Murb Mutant With Ser 229 Replaced By Ala, Complex With
Enolpyruvyl-Udp-N-Acetylglucosamine
Length = 340
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 31 GDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVT 86
GDL +++ T P V N + T PD K N + A +K V + E + ++
Sbjct: 189 GDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGAFFKNPVVSAETAKALLS 244
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 7 EAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRN-----PDPVLNPKKKIFET 56
EA + CA D+V+++ AK GDL +E R P VL K I ET
Sbjct: 76 EAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVL---KVILET 127
>pdb|2MBR|A Chain A, Murb Wild Type, Complex With Enolpyruvyl-Udp-N-
Acetylglucosamine
Length = 340
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 31 GDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVT 86
GDL +++ T P V N + T PD K N + + +K V + E + ++
Sbjct: 189 GDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAKALLS 244
>pdb|2Q85|A Chain A, Crystal Structure Of E. Coli Mur B Bound To A Naphthyl
Tetronic Acid Inihibitor
pdb|1MBB|A Chain A, Oxidoreductase
pdb|1MBT|A Chain A, Oxidoreductase
Length = 342
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 31 GDLIQVEGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVT 86
GDL +++ T P V N + T PD K N + + +K V + E + ++
Sbjct: 191 GDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAKALLS 246
>pdb|3C8F|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme With
Partially Disordered Adomet
pdb|3CB8|A Chain A, 4fe-4s-Pyruvate Formate-Lyase Activating Enzyme In Complex
With Adomet And A Peptide Substrate
Length = 245
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 38 GYTRNPDPVLNPKKKIFETVAPDLK-TNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
G+ R DPV++ ++ + V DLK ND G V N ++ LAN N+K
Sbjct: 107 GFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVG----VSNHRTLEFAKYLANKNVK 162
>pdb|3FRP|A Chain A, Crystal Structure Of Cobra Venom Factor, A Co-Factor For
C3- And C5 Convertase Cvfbb
pdb|3HRZ|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|A Chain A, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|F Chain F, Cobra Venom Factor (Cvf) In Complex With Human Factor B
Length = 627
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 4 VTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPD 44
VT ++ + ++P ++ P KPG ++ Y NPD
Sbjct: 308 VTEQSGIHIVASPYQIHFTKTPKYFKPGMPYELTVYVTNPD 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,925,512
Number of Sequences: 62578
Number of extensions: 106786
Number of successful extensions: 327
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 26
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 45 (21.9 bits)