BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15304
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 218 MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 277
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TND ATYKG + V+ +G +Q+++N IK
Sbjct: 278 LHTNDECVATYKGVPFEVKG-KGVCRAQTMSNSGIK 312
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S+AMVMCAS+P+KVEILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 216 MRGVLSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 275
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TN ATYKG + V+ +G +Q++AN IK
Sbjct: 276 LHTNAECVATYKGAPFEVKG-KGVCRAQTMANSGIK 310
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRG+ S+AMVMCAS+P+KVEILAPP+ + PGD I + + PD LNPKKKI+E + PD
Sbjct: 265 MRGILSQAMVMCASSPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 324
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
L TN ATYKG + V+ +G +Q++AN IK
Sbjct: 325 LHTNAECVATYKGSPFEVKG-KGVCRAQTMANSGIK 359
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
MRGV S AMVMCAS+PDKVEI+ P+ +KPG + YT PD LNPKKKI+ETVA D
Sbjct: 823 MRGVESRAMVMCASSPDKVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAED 882
Query: 61 LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
LK + A +KG+ + + E +T+ +L V++K
Sbjct: 883 LKVSAEGFAEWKGQPLLIGS-ESKMTAPTLRGVHVK 917
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS +VE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 431 MRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K +D A +K + + GFV+ +SL NI
Sbjct: 491 LQADFKISDDCVAQWKQTNFMTKL--GFVSCKSLKGGNI 527
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTP---DKVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
MRG+ S+ M++CAST +VE L PPS + PG+ I +EGY P+ L PKKK+FE
Sbjct: 431 MRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D + +D A +KGK + + G VT ++L +I
Sbjct: 491 LQVDFRISDDLCAQWKGKNFLTKL--GSVTCKTLRGGSI 527
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFETVAP 59
MRG+ S AMV+C S DKVE + PP +K GD + EG+ P LNPKKKI+E + P
Sbjct: 273 MRGIKSTAMVLCGSNDDKVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQP 332
Query: 60 DLKTNDSNQATYK 72
TND + +K
Sbjct: 333 HFTTNDGLEVIFK 345
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 1 MRGVTSEAMVMCAST---PDKVEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFET 56
MRG+ S+AMV+CAS P KVE L PP + GD + VEGY + PD L PKKK+FE
Sbjct: 432 MRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEK 491
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVE---GFVTSQSLANVNI 95
+ DLK + A W +N+ G +T ++L NI
Sbjct: 492 LQVDLKISGEFVAQ-----WKEQNLMTKLGRITCKTLKGGNI 528
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTP---DKVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
MRG+ S+ M++CAST +VE L PP+ + PG+ I +EGY P+ L PKKK+FE
Sbjct: 431 MRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D + +D A +KGK + + G VT ++L +I
Sbjct: 491 LQVDFRISDDLCAQWKGKNFLTKL--GSVTCKTLRGGSI 527
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS +VE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 431 MRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K ++ A +K + + GFV+ +SL NI
Sbjct: 491 LQADFKISEECIAQWKQTNFMTKL--GFVSCKSLKGGNI 527
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS KVE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 431 MRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K +D A +K + + G V+ +SL NI
Sbjct: 491 LQADFKISDEYIAQWKQTNFMTKM--GSVSCKSLKGGNI 527
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MRGVTSEAMVMCASTPDK--VEILAPPSAAKPGDLIQVEGY-TRNPDPVLNPKKKIFETV 57
MR V S+AMV CAS+PDK VE + PP A+ GD + EG+ T P+ LNPK+KI+E +
Sbjct: 346 MRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAI 405
Query: 58 APDLKTNDSNQATYK 72
P + + YK
Sbjct: 406 QPGFTSGEDLICGYK 420
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVA 58
MR + S+AMV+ AS+ D KVE++ PP A G+ + G+ PD VLNPKKK++ET+
Sbjct: 702 MRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLL 761
Query: 59 PDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
DL T ++ A YK +T G S++N I+
Sbjct: 762 VDLNTKENLVACYKDVPFTTS--AGVCKVSSISNGTIR 797
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS +VE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 431 MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K ++ A +K + + G ++ +SL NI
Sbjct: 491 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 527
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTR-NPDPVLNPKKKIFET 56
MRGV S+ M++CAS +VE L PP+ + PG+ + V+GY + PD L PKKK+FE
Sbjct: 431 MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEK 490
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D K ++ A +K + + G ++ +SL NI
Sbjct: 491 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 527
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRGVTSEAMVMCAST---PDKVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
MRGV S+ MV+CAS+ P +VE L PP+ G+ + VEGY PD L PKKK+FE
Sbjct: 430 MRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEK 489
Query: 57 VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
+ D + ++ A +K + + + G ++ +SL +I
Sbjct: 490 LQADFRISEDCIAQWKERNFLTKL--GSISCKSLKGGSI 526
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 1 MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVA 58
MRG+ S AMV+ AS D KVE++ PP +A G+ + GY+ P+ LN K K +E ++
Sbjct: 706 MRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLS 765
Query: 59 PDLKTNDSNQATYK 72
DL +N A YK
Sbjct: 766 ADLHSNGELVACYK 779
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 1 MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
MR S MV+ A D V +++P S AKPGD +
Sbjct: 651 MRFGISNGMVLAAGNGDGVWVISPDSGAKPGDKV 684
>sp|P42589|YGJH_ECOLI tRNA-binding protein YgjH OS=Escherichia coli (strain K12) GN=ygjH
PE=1 SV=1
Length = 110
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 1 MRGVTSEAMVMCASTPDKVE-ILAPPSAAKPG 31
MRG TSE M++CA T D E +L P P
Sbjct: 74 MRGETSECMLLCAETDDGSESVLLTPERMMPA 105
>sp|O74345|UCP3_SCHPO UBA domain-containing protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ucp3 PE=4 SV=1
Length = 601
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 27 AAKPGDLIQVEGYTRNPDPVLNPKKKIFE------TVAPDLKTNDS 66
KPGD +V G TR P LNP +++ +V+P ++T S
Sbjct: 236 GTKPGDAYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTSS 281
>sp|Q66478|POLG_HE71B Genome polyprotein OS=Human enterovirus 71 (strain BrCr) PE=1 SV=3
Length = 2193
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 41 RNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANV 93
++PD NP K IF +A LK+ + Y +V + +T+Q AN+
Sbjct: 48 QDPDKFANPVKDIFTEMAAPLKSPSAEACGYSDRVAQLTIGNSTITTQEAANI 100
>sp|Q66479|POLG_HE71M Genome polyprotein OS=Human enterovirus 71 (strain 7423/MS/87) PE=3
SV=3
Length = 2193
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 41 RNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANV 93
++PD NP K IF +A LK+ + Y +V + +T+Q AN+
Sbjct: 48 QDPDKFANPVKDIFTEMAAPLKSPSAEACGYSDRVAQLTIGNSTITTQEAANI 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,259,384
Number of Sequences: 539616
Number of extensions: 1347381
Number of successful extensions: 3032
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2980
Number of HSP's gapped (non-prelim): 40
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)