RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15304
         (96 letters)



>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
          Length = 164

 Score =  103 bits (257), Expect = 3e-30
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNPKKKIFETVAPD 60
           MRGV S+AMVMCAS+P+K+EILAPP+ + PGD I  + +   PD  LNPKKKI+E + PD
Sbjct: 69  MRGVLSQAMVMCASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPD 128

Query: 61  LKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNIK 96
           L TND   ATYKG  + V   +G   +Q+++N  IK
Sbjct: 129 LHTNDECVATYKGVPFEV-KGKGVCRAQTMSNSGIK 163


>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
           synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
          Length = 171

 Score = 84.3 bits (208), Expect = 7e-23
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 1   MRGVTSEAMVMCASTPD---KVEILAPPSAAKPGDLIQVEGYTRN-PDPVLNPKKKIFET 56
           MRGV S+ M++CAS      +VE L PP+ + PG+ + V+GY +  PD  L PKKK+FE 
Sbjct: 72  MRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEK 131

Query: 57  VAPDLKTNDSNQATYKGKVWTVENVEGFVTSQSLANVNI 95
           +  D K ++   A +K   +  +   G ++ +SL   NI
Sbjct: 132 LQADFKISEECIAQWKQTNFMTKL--GSISCKSLKGGNI 168


>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
           synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
           29292]}
          Length = 107

 Score = 44.2 bits (104), Expect = 6e-08
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLIQ 35
           +RG+ S+ M++ A   ++V +L P    K G  ++
Sbjct: 73  LRGIGSQGMLLAADDGERVALLMPDKEVKLGAKVR 107


>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
           TRBP111 {Aquifex aeolicus [TaxId: 63363]}
          Length = 107

 Score = 42.3 bits (99), Expect = 4e-07
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 1   MRGVTSEAMVMCASTPDKVEILAPPSAAKPGDLI 34
           + G+ S+ M++ AS  + + ++ P    K G  +
Sbjct: 73  IFGIESQGMILAASDGENLSVIVPDRDVKEGAKL 106


>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
           TRBP111 {Escherichia coli [TaxId: 562]}
          Length = 111

 Score = 38.4 bits (89), Expect = 2e-05
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 1   MRGVTSEAMVMCASTPD--KVEILAPPSAAKPGD 32
           MRG TSE M++CA T D  +  +L P      G 
Sbjct: 74  MRGETSECMLLCAETDDGSESVLLTPERMMPAGV 107


>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
           [TaxId: 274]}
          Length = 109

 Score = 37.7 bits (87), Expect = 3e-05
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 1   MRGVTSEAMVMCASTPD-KVEILAPPSAAKPGDLI 34
           + G  SE +V+       +V +LAP      G  +
Sbjct: 74  VAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKV 108


>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
          (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.4 bits (52), Expect = 1.8
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 14 STPDKVEILAPPSAAKPGDLIQVEGYTRNPDPVLNP 49
           TP++VE+   PS    G  + +        P    
Sbjct: 2  WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQL 37


>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase
          (ThiL) C-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 163

 Score = 24.1 bits (51), Expect = 3.5
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 26 SAAKPGDLIQVEG 38
            A+ GD + V G
Sbjct: 6  DGARLGDSVFVSG 18


>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
          protein HypE {Thermococcus kodakaraensis [TaxId:
          311400]}
          Length = 179

 Score = 23.3 bits (49), Expect = 6.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 26 SAAKPGDLIQVEG 38
          + AK GD + V G
Sbjct: 4  AGAKVGDAVLVSG 16


>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS
           coronavirus [TaxId: 227859]}
          Length = 155

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 57  VAPDL----KTNDSNQATYKGKVWTVENV 81
           V PD      T D N  TY   +W ++ V
Sbjct: 94  VVPDYGTYKNTCDGNTFTYASALWEIQQV 122


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 337,442
Number of extensions: 13737
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.6 bits)