BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15305
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 87/96 (90%)
Query: 41 PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVV 100
P+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNRMV+
Sbjct: 3 PIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI 62
Query: 101 LLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
LLCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 63 LLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNG 98
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 159 bits (401), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 74/96 (77%), Positives = 87/96 (90%)
Query: 41 PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVV 100
P+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNRMV+
Sbjct: 3 PIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVI 62
Query: 101 LLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
LLCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 63 LLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNG 98
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 42 VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNRMV+L
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
LCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNG 95
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 81/111 (72%), Gaps = 7/111 (6%)
Query: 46 RLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNL 105
RLD+RVGKII KHPDADSLYVEK+++GE PRTVVSGLV+FVP E++Q+R+VV+LCNL
Sbjct: 9 RLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNL 68
Query: 106 KPAKMRGVTSEAMVMCASTPD---KVEILAPPS----SDQCFIGSFSSSIP 149
KP KMRGV S+ M++CAS +VE L PP+ + F+ + P
Sbjct: 69 KPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQP 119
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 95.5 bits (236), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKIIE HP+AD LYV KV+LG+ RT+V+GL K+ E++ NR VV++
Sbjct: 622 DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVV 680
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RG+ S+ M++ A ++V +L P
Sbjct: 681 ANLEPKKLRGIGSQGMLLAADDGERVALLMP 711
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKIIE HP+AD LYV KV+LG+ RT+V+GL K+ E++ NR VV++
Sbjct: 7 DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVV 65
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RG+ S+ M++ A ++V +L P
Sbjct: 66 ANLEPKKLRGIGSQGMLLAADDGERVALLMP 96
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D RL++RVGKI+E +H +AD LY+ +V++G+ +TV S LV + E++ + VV+L
Sbjct: 8 DFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVL 66
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVE-ILAPP 134
CNL+ AKMRG TSE M++CA T D E +L P
Sbjct: 67 CNLQKAKMRGETSECMLLCAETDDGSESVLLTP 99
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMV 99
G D ++DLRV K++ A + ++ L + LG+ RTVV+G+ K+ E++ + +
Sbjct: 8 GIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDE-ERTVVAGIAKYYTPEELVGKKI 66
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
V++ NLKP K+ G+ S+ M++ AS + + ++ P
Sbjct: 67 VIVANLKPRKIFGIESQGMILAASDGENLSVIVP 100
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
+ + ++VG + +A K L V+ G RT+V+G+ +P E+++ + + +
Sbjct: 11 EFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFV 69
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NLKP K GV S+ M++ A T D L P
Sbjct: 70 VNLKPKKFSGVESQGMLILAETEDGKVYLIP 100
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 40.4 bits (93), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 48 DLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLV-----KFVPIEQMQNRMVVLL 102
+L VG I KHPDAD L + +V++GE P +V G + V + ++ R+ +
Sbjct: 44 NLVVGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLPGGI 103
Query: 103 CNLKPAKMRGVTSEAMV 119
+K AK+RG SE M+
Sbjct: 104 -KIKRAKLRGERSEGMI 119
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 47 LDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLK 106
+D+ VG+++ KHP AD L V V +GE A V + L + NR+ V L L
Sbjct: 136 VDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLTV-----KEGNRVAVAL--LP 188
Query: 107 PAKMRGVTSEAMVMCAS 123
P G+ SE M + A
Sbjct: 189 PRNFFGIVSEGMFLGAG 205
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 47 LDLRVGKIIEASKHPDADS-LYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNL 105
LDLRVG+++ A H A Y V+LG + + + + E + R+VV NL
Sbjct: 10 LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69
Query: 106 KPAKMRGVTSEAMVMCASTPD---KVEILAP 133
++ G SE +V+ PD +V +LAP
Sbjct: 70 GAKRVAGFLSEVLVL--GVPDEAGRVVLLAP 98
>pdb|2NZH|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZH|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZO|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|C Chain C, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|D Chain D, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
Length = 113
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKV-ELG-EPAPRTVVSGLVKFVPIEQMQNRMVV 100
D +LD+R G I++A + P+A ++ V + G E + + + K E + N+ V+
Sbjct: 9 DFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVI 68
Query: 101 LLCNLKPAKMRGVTSEAMVMCA 122
+ N P ++ G SE +V+
Sbjct: 69 AVVNFPPRRIAGFKSEVLVLGG 90
>pdb|2Q2H|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus.
pdb|2Q2H|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus
Length = 131
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVE-KVELGEP--APRTVVSGLVKFVPIEQMQNRMV 99
D ++D+RVG I+EA P+A ++ K++ G ++ V + P E + R V
Sbjct: 27 DFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTP-ESLVGRQV 85
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILA 132
+ + N P ++ SE + + + + +LA
Sbjct: 86 LGVVNFPPRQIGPFRSEVLTLGFADANGDIVLA 118
>pdb|2Q2I|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens.
pdb|2Q2I|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens
Length = 116
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVE-KVELGEP--APRTVVSGLVKFVPIEQMQNRMV 99
D ++D+RVG I+EA P+A ++ K++ G ++ V + P E + R V
Sbjct: 12 DFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTP-ESLVGRQV 70
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILA 132
+ + N P ++ SE + + + + +LA
Sbjct: 71 LGVVNFPPRQIGPFRSEVLTLGFADANGDIVLA 103
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 57 ASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLC--------NLKPA 108
++HP+AD L V KV +G +V G P + R+ V +K A
Sbjct: 53 CAQHPNADKLRVTKVNVGGDRLLDIVCG----APNCRQGLRVAVATIGAVLPGDFKIKAA 108
Query: 109 KMRGVTSEAMV 119
K+RG SE M+
Sbjct: 109 KLRGEPSEGML 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,525,953
Number of Sequences: 62578
Number of extensions: 110242
Number of successful extensions: 221
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 17
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)