BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15305
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Mus musculus GN=Aimp1 PE=1 SV=2
Length = 310
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 87/98 (88%)
Query: 38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNR 97
D P+D RLDLR+G I+ A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNR
Sbjct: 144 DSKPIDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNR 203
Query: 98 MVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
MVVLLCNLKPAKMRGV S+AMVMCAS+P+KVEILAPP+
Sbjct: 204 MVVLLCNLKPAKMRGVLSQAMVMCASSPEKVEILAPPN 241
>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2
Length = 312
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 75/99 (75%), Positives = 88/99 (88%)
Query: 38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNR 97
D P+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNR
Sbjct: 146 DSKPIDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNR 205
Query: 98 MVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
MV+LLCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 206 MVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNG 244
>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein
1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1
Length = 359
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/108 (70%), Positives = 93/108 (86%), Gaps = 3/108 (2%)
Query: 28 KAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVK 87
++AAP D PVD+ RLDLR+G+I+ KHPDADSLYVE+V++GE APRTV+SGLV
Sbjct: 186 QSAAP---SADSKPVDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVN 242
Query: 88 FVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
VP++QMQNRMVVLLCNLKPAKMRG+ S+AMVMCAS+P+KVEILAPP+
Sbjct: 243 HVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPEKVEILAPPN 290
>sp|Q20970|SYMC_CAEEL Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=mrs-1 PE=2 SV=1
Length = 917
Score = 155 bits (393), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 86/94 (91%)
Query: 42 VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
+D+GRLD+RVG+II+ KHPDAD+LYVE++++GE APRTVVSGLV+ VP++QMQNR+VV+
Sbjct: 755 IDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVV 814
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
LCNLKPAKMRGV S AMVMCAS+PDKVEI+ P+
Sbjct: 815 LCNLKPAKMRGVESRAMVMCASSPDKVEIMEVPA 848
>sp|Q5ZJ08|SYYC_CHICK Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2
SV=1
Length = 527
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 93/127 (73%), Gaps = 12/127 (9%)
Query: 21 PAKTKPAKAAAPKPSDKDEGPVDI--GRLDLRVGKIIEASKHPDADSLYVEKVELGEPAP 78
P+K KPA+ K+ P I RLD+RVGK++ KHPDADSLYVEK+++GEP P
Sbjct: 344 PSKAKPAEKGT-----KNSEPETIVPSRLDIRVGKVVSVEKHPDADSLYVEKIDVGEPEP 398
Query: 79 RTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCAST---PDKVEILAPPS 135
RTVVSGLV+FVP EQ+Q+R+VVLLCNLKP KMRGV S+ MV+CAS+ P +VE L PP+
Sbjct: 399 RTVVSGLVQFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPA 458
Query: 136 SDQCFIG 142
+C G
Sbjct: 459 --ECCAG 463
>sp|Q6TGS6|SYYC_DANRE Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2
Length = 529
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 98/145 (67%), Gaps = 8/145 (5%)
Query: 12 KDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKV 71
K TS+ +P+K K PK + D+ V RLD+RVGK+I KHPDADSLY+EK+
Sbjct: 335 KLTSSAYPEPSKNKGGVKGNPKQTTDDD-EVIPSRLDIRVGKVISVEKHPDADSLYLEKI 393
Query: 72 ELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCAST---PDKV 128
++GE PRTVVSGLV ++ EQ+Q+R+VVLLCNLKP KMRG+ S+AMV+CAS P KV
Sbjct: 394 DVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCASIEGEPRKV 453
Query: 129 EILAPP----SSDQCFIGSFSSSIP 149
E L PP + D+ ++ + S P
Sbjct: 454 EPLDPPEGSAAGDRVYVEGYESGKP 478
>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os06g0508700 PE=2 SV=2
Length = 801
Score = 136 bits (342), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
Query: 5 QSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKD-EGPVDIGRLDLRVGKIIEASKHPDA 63
++K DK TK + K K + K+ E V + +LD+RVG I +A KHPDA
Sbjct: 600 EAKKVADKLKGTKLSDGGQKKEQKKQSGGSKSKNAEVDVTVAKLDIRVGLIRKAQKHPDA 659
Query: 64 DSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCAS 123
DSLYVE++++GE APRTVVSGLVKF+P+E+MQNR V +LCNLKP MRG+ S AMV+ AS
Sbjct: 660 DSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAAS 719
Query: 124 TPD--KVEILAPPSS 136
D KVE++ PP S
Sbjct: 720 NEDHTKVELVEPPES 734
>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4
Length = 528
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 94/136 (69%), Gaps = 9/136 (6%)
Query: 21 PAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRT 80
P+K KPA K S+ +E V RLD+RVGK+I KHPDADSLYVEK+++GE PRT
Sbjct: 344 PSKQKPAVKGPAKNSEPEE--VIPSRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRT 401
Query: 81 VVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD---KVEILAPPS-- 135
VVSGLV+FVP E++Q+R+VV+LCNLKP KMRGV S+ M++CAS KVE L PP+
Sbjct: 402 VVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGS 461
Query: 136 --SDQCFIGSFSSSIP 149
++ F+ + P
Sbjct: 462 APGERVFVKGYEKGQP 477
>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2
SV=3
Length = 528
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 21 PAKTKPAKAAAPKPSD---------KDEGPVDI--GRLDLRVGKIIEASKHPDADSLYVE 69
PA K A AA P PS K+ P ++ RLD+RVGKII KHPDADSLYVE
Sbjct: 331 PALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVE 390
Query: 70 KVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD--- 126
K+++GE PRTVVSGLV+FVP E++Q+R+VV+LCNLKP KMRGV S+ M++CAS
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINR 450
Query: 127 KVEILAPPS----SDQCFIGSFSSSIP 149
+VE L PP+ ++ F+ + P
Sbjct: 451 QVEPLDPPAGSAPGERVFVKGYEKGQP 477
>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1
SV=4
Length = 528
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 95/147 (64%), Gaps = 18/147 (12%)
Query: 21 PAKTKPAKAAAPKPSD---------KDEGPVDI--GRLDLRVGKIIEASKHPDADSLYVE 69
PA K A AA P PS K+ P ++ RLD+RVGKII KHPDADSLYVE
Sbjct: 331 PALKKLASAAYPDPSKQKPMAKGPAKNSEPEEVIPSRLDIRVGKIITVEKHPDADSLYVE 390
Query: 70 KVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD--- 126
K+++GE PRTVVSGLV+FVP E++Q+R+VV+LCNLKP KMRGV S+ M++CAS
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINR 450
Query: 127 KVEILAPPS----SDQCFIGSFSSSIP 149
+VE L PP+ + F+ + P
Sbjct: 451 QVEPLDPPAGSAPGEHVFVKGYEKGQP 477
>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2
SV=3
Length = 528
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 96/147 (65%), Gaps = 18/147 (12%)
Query: 21 PAKTKPAKAAAPKPSD---------KDEGPVDI--GRLDLRVGKIIEASKHPDADSLYVE 69
PA K A AA P PS K+ P ++ RLD+RVGKI+ KHPDADSLYVE
Sbjct: 331 PALKKLASAAYPDPSKQKPPAKGPAKNSEPEEVIPSRLDIRVGKILSVEKHPDADSLYVE 390
Query: 70 KVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD--- 126
K+++GE PRTVVSGLV+FVP E++Q+R+VV+LCNLKP KMRGV S+ M++CAS
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSR 450
Query: 127 KVEILAPPS----SDQCFIGSFSSSIP 149
+VE L PP+ ++ F+ + P
Sbjct: 451 QVEPLDPPAGSAPGERVFVQGYEKGQP 477
>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars
PE=2 SV=3
Length = 528
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 74/147 (50%), Positives = 95/147 (64%), Gaps = 18/147 (12%)
Query: 21 PAKTKPAKAAAPKPSD---------KDEGPVDI--GRLDLRVGKIIEASKHPDADSLYVE 69
PA K A AA P PS K P +I RLD+RVGKI+ KHPDADSLYVE
Sbjct: 331 PALKKLASAAYPDPSKQKPTAKGPAKSSEPEEIIPSRLDIRVGKILSVEKHPDADSLYVE 390
Query: 70 KVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD--- 126
K+++GE PRTVVSGLV+FVP E++Q+R+VV+LCNLKP KMRGV S+ M++CAS
Sbjct: 391 KIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSR 450
Query: 127 KVEILAPPS----SDQCFIGSFSSSIP 149
+VE L PP+ ++ F+ + P
Sbjct: 451 QVEPLDPPAGSAPGERVFVQGYEKGQP 477
>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
GN=At4g13780 PE=2 SV=1
Length = 797
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
Query: 20 KPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPR 79
K K PKP + + + RLD+RVGKI++A KHP AD+LYVE++++G R
Sbjct: 612 KKQKASSKGGGKPKPQPAADREITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIR 671
Query: 80 TVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD--KVEILAPPSS 136
TVVSGLVK++P+E+MQNRMV +LCNLKPAKMR + S+AMV+ AS+ D KVE++ PP +
Sbjct: 672 TVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKT 730
>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2
SV=1
Length = 528
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 9/131 (6%)
Query: 28 KAAAPKPSDKDEG--PVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGL 85
+ + PK S K+ G +D LDLRVGKI+ S+HPDADSLYVE V++GE PR VVSGL
Sbjct: 347 QKSVPKGSTKNSGTEEIDPSLLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGL 406
Query: 86 VKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD---KVEILAPPS----SDQ 138
V++VP +Q+ R VVLLCNLKP KMRG+ S+ M++CAST +VE L PPS ++
Sbjct: 407 VQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGER 466
Query: 139 CFIGSFSSSIP 149
+I + + P
Sbjct: 467 IYIEGYENGEP 477
>sp|Q6DIJ1|SYYC_XENTR Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars
PE=2 SV=1
Length = 528
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 88/131 (67%), Gaps = 9/131 (6%)
Query: 28 KAAAPKPSDKDEGP--VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGL 85
+ PK S K+ GP +D LDLRVGKI+ +HPDADSLYVE V++GE PR VVSGL
Sbjct: 347 QKTVPKGSTKNSGPEEIDPSLLDLRVGKILSVRQHPDADSLYVESVDVGEENPRCVVSGL 406
Query: 86 VKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD---KVEILAPPS----SDQ 138
V++VP +Q+ R VVLLCNLKP KMRG+ S+ M++CAST +VE L PP+ ++
Sbjct: 407 VQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGER 466
Query: 139 CFIGSFSSSIP 149
+I + + P
Sbjct: 467 IYIEGYENGEP 477
>sp|P46672|G4P1_YEAST GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2
Length = 376
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
Query: 47 LDLRVGKIIEASKHPDADSLYVEKVELG-EPAPRTVVSGLVKFVPIEQMQNRMVVLLCNL 105
+D RVG I +A KHPDADSLYV +++G E PRTV SGLVK P++ MQ R VV++CNL
Sbjct: 209 IDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVCNL 268
Query: 106 KPAKMRGVTSEAMVMCASTPDKVEILAPP----SSDQCFIGSFSSSIP 149
KP MRG+ S AMV+C S DKVE + PP + D+ F F P
Sbjct: 269 KPVNMRGIKSTAMVLCGSNDDKVEFVEPPKDSKAGDKVFFEGFGDEAP 316
>sp|Q9P6K7|YLF4_SCHPO Uncharacterized tRNA-binding protein C30C2.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC30C2.04 PE=4 SV=1
Length = 450
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 76/115 (66%), Gaps = 13/115 (11%)
Query: 25 KPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEP-APRTVVS 83
+P KAA P PS +D R+G I +A KHP+ADSLYV + G+ PRTV S
Sbjct: 270 EPPKAATPVPS----------MIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCS 319
Query: 84 GLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDK--VEILAPPSS 136
GLVK++P+EQMQ R V+++ NLKP MR V S+AMV CAS+PDK VE + PP +
Sbjct: 320 GLVKYIPLEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPEN 374
>sp|Q9V011|SYM_PYRAB Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=metG PE=1 SV=1
Length = 722
Score = 94.0 bits (232), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKIIE HP+AD LYV KV+LG+ RT+V+GL K+ E++ NR VV++
Sbjct: 622 DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEV-RTLVAGLKKYYKPEELLNRYVVVV 680
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RG+ S+ M++ A ++V +L P
Sbjct: 681 ANLEPKKLRGIGSQGMLLAADDGERVALLMP 711
>sp|O58721|SYM_PYRHO Methionine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=metG PE=3 SV=1
Length = 723
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKIIE HP+AD LY+ KV+LG+ RT+V+GL K+ E++ N+ V+++
Sbjct: 623 DFAKLDLRVGKIIEVKDHPNADKLYIVKVDLGKEV-RTLVAGLKKYYKPEELLNKYVIIV 681
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RGV S+ M++ A + V +L P
Sbjct: 682 ANLEPKKLRGVESQGMLLAADDGENVALLMP 712
>sp|Q8U221|SYM_PYRFU Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1
Length = 724
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
+ ++DLR+GKI+E HP+AD LYV KV+LG RT+V+GL K+ E++ NR VV++
Sbjct: 624 EFSKIDLRIGKIVEVQDHPNADKLYVVKVDLGGEI-RTLVAGLKKYYKPEELLNRYVVIV 682
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RGV S+ M++ A +KV +L P
Sbjct: 683 ANLEPKKLRGVESQGMLLAADDGEKVALLMP 713
>sp|P42589|YGJH_ECOLI tRNA-binding protein YgjH OS=Escherichia coli (strain K12) GN=ygjH
PE=1 SV=1
Length = 110
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D RL++RVGKI+E +H +AD LY+ +V++G+ +TV S LV + E++ + VV+L
Sbjct: 8 DFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVL 66
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVE-ILAPP 134
CNL+ AKMRG TSE M++CA T D E +L P
Sbjct: 67 CNLQKAKMRGETSECMLLCAETDDGSESVLLTP 99
>sp|Q5JDZ7|SYM_PYRKO Methionine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1
Length = 741
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 63/91 (69%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
+ +LDLRVGKIIE + HP+AD LYV KV+LG+ R +V+GL K+ E++ VV++
Sbjct: 641 EFAKLDLRVGKIIEVNDHPNADRLYVVKVDLGDEV-RQLVAGLKKYYKPEELLGHYVVII 699
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RGV S+ M++ A ++V +L P
Sbjct: 700 ANLEPKKLRGVESQGMLLAADDGERVALLMP 730
>sp|B6YUN0|SYM_THEON Methionine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=metG PE=3 SV=1
Length = 733
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKI++ HP+AD LYV KV+LG R +V+GL K+ + + NR VV++
Sbjct: 633 DFMKLDLRVGKIVDVQDHPNADKLYVVKVDLGNEV-RQLVAGLKKYYSKDDLLNRYVVII 691
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
NL+P K+RG+ S+ M++ A + V +L P
Sbjct: 692 ANLEPKKLRGIESQGMLLAADDGENVALLMP 722
>sp|Q74MZ1|SYM_NANEQ Methionine--tRNA ligase OS=Nanoarchaeum equitans (strain Kin4-M)
GN=metG PE=3 SV=1
Length = 776
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 42 VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
+D +LD+RVGKII+ HP+AD LY+ KV LG +T+V GL ++ E++ + VVL
Sbjct: 675 LDFAKLDMRVGKIIDVQDHPNADKLYIIKVSLGNKQ-KTLVGGLKQYYKKEELIGKYVVL 733
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAP 133
+ NLKP ++RG+TSE M++ A +V +L P
Sbjct: 734 INNLKPKQLRGITSEGMLLAADDGKEVALLMP 765
>sp|P23395|SYM_THET8 Methionine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=metG PE=1 SV=2
Length = 618
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 18 PEKPAKTKPAKAAAPKPSDKDE---GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELG 74
PE+ P K A + K+E G D +++LRV +++ A KHP+AD L V ++ LG
Sbjct: 490 PEEAPVLFPKKEAKVEAKPKEEAWIGIEDFAKVELRVAEVLAAEKHPNADRLLVLRLSLG 549
Query: 75 EPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCA 122
RTVVSG+ K+ E++ + VVL+ NLKPAK+RG+ S+ M++ A
Sbjct: 550 NEE-RTVVSGIAKWYRPEELVGKKVVLVANLKPAKLRGIESQGMILAA 596
>sp|Q73NT9|SYM_TREDE Methionine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=metG PE=3 SV=1
Length = 793
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 46 RLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNL 105
++ L+ KII +HPDAD LY+EK++ G RT++SGLV F+ +++ + V++ NL
Sbjct: 625 KIALKTAKIISVERHPDADKLYIEKLDDGSGEERTILSGLVPFLKEDEILGKTVIIADNL 684
Query: 106 KPAKMRGVTSEAMVMCASTPDK-----VEILAPP 134
KP KMRG+ S+ M++ AS D+ VE+L P
Sbjct: 685 KPRKMRGIESKGMLLAASWYDEEEKEHVELLQAP 718
>sp|Q9RUF3|SYM_DEIRA Methionine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=metG PE=3 SV=1
Length = 681
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 4 PQSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDA 63
PQ+K T T P K + KP +AAAP +D D ++DLR+ +++ A
Sbjct: 542 PQAKKEKKTVTDTAPAKTTEQKP-EAAAPAQNDGLISIDDFAKIDLRIAEVVACEAVEKA 600
Query: 64 DSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCA 122
D L V+LG+ RTVVSG+ K+ E + R VVL+ NLKPAK+RG+ S+ M++ A
Sbjct: 601 DKLLKLTVKLGDET-RTVVSGIRKWYEPEALVGRKVVLVANLKPAKLRGIESQGMILAA 658
>sp|A4FZL1|SYM_METM5 Methionine--tRNA ligase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=metG PE=3 SV=1
Length = 663
Score = 72.8 bits (177), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 12 KDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDI---GRLDLRVGKIIEASKHPDADSLYV 68
K+ K K A+TK + + S + +DI G +DLRVG+I+E + P + LY
Sbjct: 529 KENLMKATKKAETKSDEKSKKVKSGEKMDIIDIDYFGNIDLRVGQILEVEEVPRSKKLYK 588
Query: 69 EKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKV 128
+LG+ R +VSGL E++ + V+++CNLKPAK+ GV S+ M++ A V
Sbjct: 589 ITADLGDEK-RQIVSGLKGAYEAEELVGKKVIIICNLKPAKLCGVESQGMLLAAEDDSIV 647
Query: 129 EILA 132
+LA
Sbjct: 648 SLLA 651
>sp|Q6M0E5|SYM_METMP Methionine--tRNA ligase OS=Methanococcus maripaludis (strain S2 /
LL) GN=metG PE=3 SV=1
Length = 663
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 12 KDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDI---GRLDLRVGKIIEASKHPDADSLYV 68
K+ K K A+TK + + S + +DI G +DLRVG+I+E + P + LY
Sbjct: 529 KENLMKATKKAETKSDEKSKKVKSGEKMDIIDIDYFGNIDLRVGQILEVEEVPRSKKLYK 588
Query: 69 EKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKV 128
+LG+ R +VSGL+ E++ + V+++CNLKPAK+ GV S+ M++ A V
Sbjct: 589 IIADLGDEK-RQIVSGLIGAYDAEELVGKKVIIICNLKPAKLCGVESQGMLLAAEDDSIV 647
Query: 129 EILA 132
+L+
Sbjct: 648 SLLS 651
>sp|Q4FRS8|SYM_PSYA2 Methionine--tRNA ligase OS=Psychrobacter arcticus (strain DSM 17307
/ 273-4) GN=metG PE=3 SV=1
Length = 700
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 2 STPQSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDE--GPVDIGRLDLRVGKIIEASK 59
++ S + VD T+++ +K A AA P +++ + G D +++++V +I S
Sbjct: 555 ASKASLTQVDAPTASQDDKMVAKNTAPAATPSSTEQADYIGIEDFAKVEMKVAHVIACSY 614
Query: 60 HPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMV 119
AD L +++GE PR V SG+ KF EQ+ ++ V+ + NL P KM+ SE M+
Sbjct: 615 VEGADKLLQFTLDVGEAQPRNVFSGIRKFYEPEQLLDKKVICVTNLAPRKMKFGISEGMI 674
Query: 120 MCASTPDKVEILAPPSSDQCFIGSF 144
+ + P K ++ D C IG
Sbjct: 675 LSSGDP-KTQLTVVTLPDNCVIGDL 698
>sp|A6GVQ2|SYM_FLAPJ Methionine--tRNA ligase OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=metG PE=3 SV=1
Length = 686
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 5 QSKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDAD 64
Q + +DK +TK A+ K A+ P + D ++DLRVG IIEA K P A+
Sbjct: 551 QIQKQIDKLEATKTANIAENKKAE-----PQKELIQYDDFAKMDLRVGTIIEAEKMPKAN 605
Query: 65 SLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCAST 124
L V KV+ G RT+VSG+ + E++ + V +L NL P +RG+ S+ M++ +
Sbjct: 606 KLLVLKVDTGIDV-RTIVSGIAESFSPEEIIGKQVTVLVNLAPRALRGIESQGMILMTNL 664
Query: 125 PD 126
PD
Sbjct: 665 PD 666
>sp|A6VIW5|SYM_METM7 Methionine--tRNA ligase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=metG PE=3 SV=1
Length = 663
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 11 DKDTSTKPE------KPAKTKPAKAAAPKPSDKDEGPVDI---GRLDLRVGKIIEASKHP 61
D+D S E K A+TK + + S + +DI G +DLRVG+I+E + P
Sbjct: 522 DEDISRMKENLLAATKKAETKTDEKSKKVKSGEKMDIIDIDYFGNVDLRVGQILEVEEVP 581
Query: 62 DADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMC 121
+ LY +LG+ R +VSGL E++ + V+++CNLKPAK+ GV S+ M++
Sbjct: 582 RSKKLYKIIADLGDEK-RQIVSGLKGAYEAEELVGKKVIIICNLKPAKLCGVESQGMLLA 640
Query: 122 ASTPDKVEILA 132
A V +LA
Sbjct: 641 AEDDSIVSLLA 651
>sp|Q92F90|SYM_LISIN Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=metG PE=3 SV=1
Length = 664
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 4 PQSKSPVDKDTSTKPEKPAKTK------PAKAAAPKPSDKDE----------GPVDIGRL 47
P+ + V K T P A+ + K +AP P+++ G D ++
Sbjct: 508 PEGTTVVKKGTPIFPRLDAEVEVTYIQDEMKGSAPAPAEETAEVEALETPQIGIEDFDKI 567
Query: 48 DLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKP 107
DLRV ++ + K AD L +++LGE R V+SG+ +F E++ + V+++ NLKP
Sbjct: 568 DLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLKP 627
Query: 108 AKMRGVTSEAMVMCASTPDKVEILAPPSS 136
K+RG+ SE M++ K+ ++ S+
Sbjct: 628 VKLRGLMSEGMILSGEKDGKLSVIEANSA 656
>sp|A0M5Z9|SYM_GRAFK Methionine--tRNA ligase OS=Gramella forsetii (strain KT0803)
GN=metG PE=3 SV=1
Length = 691
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 11 DKDTSTKPEKPAKTKPAKA---AAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLY 67
D+ + EK TK A A +P + D ++DLRVG IIEA K P L
Sbjct: 554 DEQMEKQLEKLEATKTANAMEDQKAEPQKEIATFEDFTKMDLRVGTIIEAQKMPKTKKLM 613
Query: 68 VEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDK 127
V KV+ G RTVVSG+ + E + + V +L NL P K+RGV SE M++ +
Sbjct: 614 VLKVDTGIDQ-RTVVSGIAEHFKAEDIIGKKVTVLANLAPRKLRGVDSEGMILMTENAEG 672
Query: 128 VEILAPPSSD 137
+ P D
Sbjct: 673 KLVFVNPDED 682
>sp|Q1QAD0|SYM_PSYCK Methionine--tRNA ligase OS=Psychrobacter cryohalolentis (strain K5)
GN=metG PE=3 SV=1
Length = 700
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 6 SKSPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDE--GPVDIGRLDLRVGKIIEASKHPDA 63
S + V T+++ +K A + AA P +++ + G D +++++V +I + A
Sbjct: 559 SLTQVGAPTASQDDKAAAKNTSPAAMPSSTEQADYIGIEDFAKVEMKVAHVIACNHVEGA 618
Query: 64 DSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCAS 123
D L +++GE PR V SG+ KF EQ+Q + V+ + NL P KM+ SE MV+ +
Sbjct: 619 DKLLQFTLDVGEAQPRNVFSGIRKFYEPEQLQGKKVICVTNLAPRKMKFGISEGMVLSSG 678
Query: 124 TPDKVEILAPPSSDQCFIG 142
P K ++ D+ IG
Sbjct: 679 DP-KTGLVVITLPDEAVIG 696
>sp|O83776|SYM_TREPA Methionine--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=metG PE=3 SV=1
Length = 811
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 6/142 (4%)
Query: 17 KPEKPAKTKPAKAAAPKPSDKDEGPVDIG-RLDLRVGKIIEASKHPDADSLYVEKVELGE 75
K E A+ K + P PSD R+ L+V ++++ +HP+AD L+VE ++ G
Sbjct: 621 KKETDAQQKKEEREMPPPSDTARLSAFFSERVVLKVARVLQVERHPNADMLFVETLDDGS 680
Query: 76 PAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD-----KVEI 130
R +VSGLV ++ + ++ V+++ NL+P +RGV S M++ A D +E+
Sbjct: 681 GVERVIVSGLVPYMAADALRGAHVLIVDNLQPRSLRGVRSCGMLLAAEYVDAQGTKAIEL 740
Query: 131 LAPPSSDQCFIGSFSSSIPYFT 152
+ P + + +S+ P T
Sbjct: 741 VQAPWALPGERATLASAPPVIT 762
>sp|Q46F18|SYM_METBF Methionine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=metG PE=3 SV=1
Length = 710
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 20 KPAKTKPAKAAAPKPSDKDEGPV----DIGRLDLRVGKIIEASKHPDADSLYVEKVELGE 75
KPA+ K AA P+ +K+ P+ D +LD+RVGK++ A + L +V++GE
Sbjct: 582 KPAE-KAGGAAKPREEEKETLPMIEYEDFAKLDIRVGKVLLAEPVKKSKKLIRIEVDIGE 640
Query: 76 PAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
R +V+GL + E++ + V++L NLKPAK+ GV S M++ A D EI++
Sbjct: 641 EKTRQLVAGLSSYYAPEELVGKSVIVLANLKPAKLCGVKSNGMMLAAD--DGGEIVSALM 698
Query: 136 SDQ 138
D+
Sbjct: 699 PDK 701
>sp|A5FLM7|SYM_FLAJ1 Methionine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=metG PE=3 SV=1
Length = 711
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 11 DKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPV---DIGRLDLRVGKIIEASKHPDADSLY 67
D++ + +K TK A A + ++ + + D ++D+R+G I+EA K P A+ L
Sbjct: 575 DEEIQKQIDKLEATKTANIAENQKAEPQKDLIQFEDFAKMDIRIGTILEAEKMPKANKLL 634
Query: 68 VEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDK 127
V KV+ G RT+VSG+ + E++ + V +L NL P +RGV S+ M++ + +
Sbjct: 635 VLKVDTGIDV-RTIVSGIAESFSPEEIIGKRVSVLANLAPRALRGVESQGMILMTTNAEG 693
Query: 128 VEILAPPSSD 137
+ P +D
Sbjct: 694 KLVFVNPDAD 703
>sp|Q8YAF2|SYM_LISMO Methionine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=metG PE=3 SV=1
Length = 664
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMV 99
G D ++DLRV ++ + K AD L +++LGE R V+SG+ +F E++ + V
Sbjct: 560 GIEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKV 619
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
+++ NLKP K+RG+ SE M++ K+ ++ S+
Sbjct: 620 IVVSNLKPVKLRGLMSEGMILSGEKDGKLSVIEASSA 656
>sp|Q724N6|SYM_LISMF Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=metG PE=3 SV=1
Length = 665
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMV 99
G D ++DLRV ++ + K AD L +++LGE R V+SG+ +F E++ + V
Sbjct: 561 GIEDFDKIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKV 620
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPSS 136
+++ NLKP K+RG+ SE M++ K+ ++ S+
Sbjct: 621 IVVSNLKPVKLRGLMSEGMILSGEKDGKLSVIEASSA 657
>sp|Q6MDG0|SYM_PARUW Methionine--tRNA ligase OS=Protochlamydia amoebophila (strain
UWE25) GN=metG PE=3 SV=1
Length = 698
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKII+A+ P + L+ V++G R VV+G+ +F +E + + VV++
Sbjct: 599 DFRKLDLRVGKIIQANPVPKSKKLFQLLVDIG-IEKRIVVAGVAEFYKVEDLIGKNVVVV 657
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILA 132
NLKPA + GVTS+ M++ A +++++
Sbjct: 658 ANLKPANLMGVTSQGMLLAAKGEGNLKLIS 687
>sp|Q6MMA3|SYM_BDEBA Methionine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=metG PE=3 SV=1
Length = 687
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D ++DLR+G++IEA + +AD L K+++GE R ++SG+ EQ+ R V++
Sbjct: 585 DFDKVDLRIGQVIEAEEIKEADKLLRLKIDIGEGQIRQIISGIKAAYKPEQLVGRKVLVC 644
Query: 103 CNLKPAKMRGVTSEAMVMCAST 124
NLKP KM+ SE MV+ A T
Sbjct: 645 VNLKPRKMKFGMSEGMVLAAGT 666
>sp|Q0W0H2|SYM_UNCMA Methionine--tRNA ligase OS=Uncultured methanogenic archaeon RC-I
GN=metG PE=3 SV=1
Length = 683
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +++LRVGK+I + K + L ++LGE PR +VSG+ + E+M + V+++
Sbjct: 583 DFAKMELRVGKVIASEKIKGSKKLLKNLIDLGEDKPRQIVSGIAEVYTPEEMVGKTVIVI 642
Query: 103 CNLKPAKMRGVTSEAMVMCAST 124
NLKP K+ GV S M++ A +
Sbjct: 643 ANLKPTKIMGVESNGMILAADS 664
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMV 99
G D ++DLRV + EA+ +D L +++GE PR V SG+ +F E ++ ++V
Sbjct: 581 GIEDFIKVDLRVALVQEAATVEGSDKLLQLTLDVGEAEPRNVFSGIREFYQPEDLKGKLV 640
Query: 100 VLLCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
V++ NL P KMR S MV+ A D V +++P S
Sbjct: 641 VMVANLAPRKMRFGISNGMVLAAGNGDGVWVISPDS 676
>sp|Q7MXK7|SYM_PORGI Methionine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=metG PE=3 SV=1
Length = 680
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 20 KPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPR 79
K A K A AAP +D D +LD+RVG ++E K P AD L +++ G R
Sbjct: 558 KLANEKAAHQAAPIA--EDIAFEDFLKLDIRVGTVLECEKVPKADKLLRFRIDDGLSG-R 614
Query: 80 TVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD 126
T+VSG+ K E++ + V + NL P K++G+ SE M++ A D
Sbjct: 615 TIVSGIAKHYAPEELVGKQVCFIANLPPRKLKGIESEGMILSAEDAD 661
>sp|O33925|SYM_THEMA Methionine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=metG PE=3 SV=1
Length = 629
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D ++DLR+ K++EA K P++ L ++LG R +V+G+ + E++ +++V++
Sbjct: 529 DFSKVDLRIAKVLEAEKVPNSRKLLRLIIDLGTEK-RQIVAGIAEHYRPEELVGKLIVVV 587
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEIL 131
NLKPAK+ G+ S+ M++ A + D + +L
Sbjct: 588 ANLKPAKLMGIESQGMLLAAKSGDTLRLL 616
>sp|B2RHF5|SYM_PORG3 Methionine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=metG PE=3 SV=1
Length = 680
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 20 KPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPR 79
K A K A AAP +D D +LD+RVG ++E K P AD L +++ G R
Sbjct: 558 KLANEKAAHQAAPIA--EDIAFEDFLKLDIRVGTVLECEKVPKADKLLRFRIDDGLGG-R 614
Query: 80 TVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPD 126
T+VSG+ K E++ + V + NL P K++G+ SE M++ A D
Sbjct: 615 TIVSGIAKHYAPEELVGKQVCFIANLPPRKLKGIESEGMILSAEDAD 661
>sp|Q8XHG1|SYM_CLOPE Methionine--tRNA ligase OS=Clostridium perfringens (strain 13 /
Type A) GN=metG PE=3 SV=1
Length = 645
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 20 KPAKTKPAKAAAPKPSDKDEGPVD-IGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAP 78
KPA KPA + K+E +D ++DLRV K++E A L KV+LG
Sbjct: 520 KPAPVKPANEELVENPIKEEITIDDFDKIDLRVVKVLECEPVKKAKKLLKLKVDLGGEE- 578
Query: 79 RTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCASTPDKVEIL 131
R V+SG+ ++ E++ + VVL+ NLKP K+RG S+ M++ A+ D E+L
Sbjct: 579 RQVISGIAQYYKPEELVGKYVVLVANLKPVKLRGELSQGMILAAAPSDDSELL 631
>sp|Q58659|SYM_METJA Methionine--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=metG PE=3 SV=1
Length = 651
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 46 RLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNL 105
++DLRVG+++EA P + L V+LG+ R +VSG+ + E + + V+++CNL
Sbjct: 553 KIDLRVGEVVEAEDIPKSKKLLKLMVDLGDEK-RQIVSGIKGYYKPEDLVGKKVIVICNL 611
Query: 106 KPAKMRGVTSEAMVMCA 122
KPAK+ GV SE M++ A
Sbjct: 612 KPAKLCGVLSEGMILAA 628
>sp|Q54X95|SYMC_DICDI Probable methionine--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=metS PE=3 SV=1
Length = 736
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 47 LDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLK 106
+D+++ ++E + HP A++LYV K+ LG +T VSG+ Q+ + + ++ NLK
Sbjct: 577 IDMKIATVLEVNDHPSAENLYVIKLSLGGDQTKTAVSGIKANFEKSQLIGKKLAVVLNLK 636
Query: 107 PAKMRGVTSEAMVMCA----STPDKVEILAPPSSDQCFIGS 143
P+K +GV SEAM++ A +T + + L P + GS
Sbjct: 637 PSKFKGVLSEAMILVADDGQATKESLSFLVPSNPQSIEAGS 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,087,626
Number of Sequences: 539616
Number of extensions: 2334718
Number of successful extensions: 9187
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 8347
Number of HSP's gapped (non-prelim): 790
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)