Query psy15305
Match_columns 153
No_of_seqs 120 out of 1041
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:39:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ntg_A Tyrrs, tyrosyl-tRNA syn 100.0 6E-32 2.1E-36 213.6 12.9 110 40-149 3-119 (172)
2 1fl0_A Endothelial-monocyte ac 100.0 1.6E-31 5.5E-36 211.1 9.7 103 43-145 2-108 (171)
3 3ers_X TRNA-binding protein YG 100.0 2E-31 6.7E-36 199.5 8.6 105 38-143 3-113 (118)
4 1gd7_A CSAA protein; oligonucl 100.0 2.6E-31 8.8E-36 196.2 6.9 96 40-135 3-100 (109)
5 3g48_A Chaperone CSAA; structu 100.0 1.3E-31 4.5E-36 198.8 5.2 99 36-134 2-102 (112)
6 1mkh_A Metrs;, C-terminal doma 100.0 3.5E-31 1.2E-35 194.8 7.4 96 39-135 3-98 (107)
7 2q2h_A AGR_C_4014P, secretion 100.0 1.1E-30 3.6E-35 198.7 7.7 98 38-135 22-122 (131)
8 1pxf_A Hypothetical protein YG 100.0 8.6E-31 2.9E-35 193.9 6.3 95 38-133 3-99 (111)
9 2q2i_A AGR_C_4014P, secretion 100.0 1.4E-30 4.6E-35 194.1 6.9 97 39-135 8-107 (116)
10 2cwp_A Metrs related protein; 100.0 3.2E-30 1.1E-34 191.1 8.6 96 39-135 7-103 (112)
11 2nzh_A Protein CSAA; beta barr 100.0 5.9E-31 2E-35 195.3 2.5 97 38-135 4-104 (113)
12 1pyb_A Methionyl-tRNA syntheta 100.0 3.5E-30 1.2E-34 190.5 6.1 95 39-135 7-102 (111)
13 3bu2_A Putative tRNA-binding p 99.9 3.2E-23 1.1E-27 167.0 10.2 72 47-125 91-171 (199)
14 1rqg_A Methionyl-tRNA syntheta 99.9 7.3E-25 2.5E-29 202.1 0.0 96 38-134 617-712 (722)
15 2e8g_A Hypothetical protein PH 99.9 2.3E-22 7.8E-27 166.1 11.0 87 39-136 128-214 (241)
16 3pco_B Phenylalanyl-tRNA synth 99.8 7.9E-20 2.7E-24 170.8 8.7 85 48-138 44-146 (795)
17 1b7y_B Phers, protein (phenyla 99.7 3.4E-19 1.1E-23 166.4 4.3 88 48-139 44-146 (785)
18 2rhq_B Phenylalanyl-tRNA synth 99.7 5.2E-17 1.8E-21 151.6 7.8 68 48-125 44-120 (795)
19 3kf6_A Protein STN1; OB fold, 52.8 24 0.00081 26.6 5.2 34 50-86 52-85 (159)
20 3kf8_A Protein STN1; OB fold; 29.1 1E+02 0.0035 24.6 5.5 36 50-85 90-130 (220)
21 3j20_E 30S ribosomal protein S 22.9 47 0.0016 27.0 2.5 14 50-63 195-208 (243)
22 3iz6_D 40S ribosomal protein S 20.1 49 0.0017 27.3 2.1 23 50-74 191-213 (265)
No 1
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=99.97 E-value=6e-32 Score=213.62 Aligned_cols=110 Identities=57% Similarity=0.972 Sum_probs=100.8
Q ss_pred CCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceecccee
Q psy15305 40 GPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMV 119 (153)
Q Consensus 40 ~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGMl 119 (153)
...||.+++||||+|+++++||+||||++|+||+|+++.||||||+.|+|.+++|.|+++++++||++++|||+.|+|||
T Consensus 3 ~~~df~kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMv 82 (172)
T 1ntg_A 3 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGML 82 (172)
T ss_dssp CCCCGGGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEE
T ss_pred cccCccEeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEE
Confidence 45799999999999999999999999999999999867899999999999999999999999999999999999999999
Q ss_pred ecccCCC---ceEEecC----CCCCeeeeCcccCCCC
Q psy15305 120 MCASTPD---KVEILAP----PSSDQCFIGSFSSSIP 149 (153)
Q Consensus 120 LCs~~e~---gi~lL~~----p~g~~~~~g~~~~~~~ 149 (153)
|||.+|+ |+.+|.+ |.|+++.+++|.+..|
T Consensus 83 Lcs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~~~p 119 (172)
T 1ntg_A 83 LCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQP 119 (172)
T ss_dssp CEEEEESSSEEEEECBCCBTCCTTCEEEETTCSSCCC
T ss_pred eEecccccCCCeEEEECCCCCCCCCEEEeCCcCCCCC
Confidence 9999876 6767776 5799999999965555
No 2
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=99.97 E-value=1.6e-31 Score=211.06 Aligned_cols=103 Identities=72% Similarity=1.125 Sum_probs=96.8
Q ss_pred CCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccceeecc
Q psy15305 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAMVMCA 122 (153)
Q Consensus 43 df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGMlLCs 122 (153)
||++++||||+|+++++||+||||++|+||+|+++.||||||+.|+|.+++++++++++++||++++|||+.|+||||||
T Consensus 2 df~kldirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs 81 (171)
T 1fl0_A 2 DVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCA 81 (171)
T ss_dssp CGGGSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECEE
T ss_pred CccEEeEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEEE
Confidence 79999999999999999999999999999999867899999999999999999999987899999999999999999999
Q ss_pred cCCCceEEecC----CCCCeeeeCccc
Q psy15305 123 STPDKVEILAP----PSSDQCFIGSFS 145 (153)
Q Consensus 123 ~~e~gi~lL~~----p~g~~~~~g~~~ 145 (153)
.+++++.+|.+ |.|+++.+++|.
T Consensus 82 ~~~~~~~il~~~~~~~~G~~v~~~g~~ 108 (171)
T 1fl0_A 82 SSPEKIEILAPPNGSVPGDRITFDAFP 108 (171)
T ss_dssp EETTEEEECBCCTTCCTTCBCCCTTSC
T ss_pred ecCCCEEEEECCCCCCCCCEEEeCCCC
Confidence 99888888865 579999999985
No 3
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=99.97 E-value=2e-31 Score=199.46 Aligned_cols=105 Identities=40% Similarity=0.717 Sum_probs=91.3
Q ss_pred CCCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccc
Q psy15305 38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEA 117 (153)
Q Consensus 38 ~e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeG 117 (153)
..++.||+++|||||+|++|++||+||||++|+||+|+ +.++++||+.++|.+++|.|+++++++||+|++|||+.|+|
T Consensus 3 ~I~~ddF~kvdirVG~I~~~e~hp~AdKL~~~~VD~G~-~~~~iv~g~~~~y~pe~LvGk~v~~v~Nlkp~kirGv~S~G 81 (118)
T 3ers_X 3 TVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSEC 81 (118)
T ss_dssp CCCHHHHHTSCEEEEEEEEEECCTTCSSCEEEEEECSS-SEEEEEECCTTTSCHHHHTTCEEEEECCSCCEEETTEEECC
T ss_pred eEcHHHceeeeEEEEEEEEEEEcCCCCCcEEEEEEcCC-cEeeEEEEeehhcCHhHhcCCEEEeecccccceECCeeceE
Confidence 35678999999999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred eeecccCCCc--eEEecC----CCCCeeeeCc
Q psy15305 118 MVMCASTPDK--VEILAP----PSSDQCFIGS 143 (153)
Q Consensus 118 MlLCs~~e~g--i~lL~~----p~g~~~~~g~ 143 (153)
||||+..++| +.+|.| |.|+++.+.+
T Consensus 82 Mll~a~~~d~~~~~ll~p~~~~~~G~rv~~e~ 113 (118)
T 3ers_X 82 MLLCAETDDGSESVLLTPERMMPAGVRVVLDH 113 (118)
T ss_dssp EECEEECTTSSCEEECCCSSCCCTTCBCCCC-
T ss_pred EEEEEEcCCCCcEEEEcCCCCCCCCCEEEEee
Confidence 9777766655 566655 4577776543
No 4
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=99.97 E-value=2.6e-31 Score=196.16 Aligned_cols=96 Identities=28% Similarity=0.407 Sum_probs=85.4
Q ss_pred CCCCCCccCeEEEEEEEEEeCCCCCCe-eEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccce
Q psy15305 40 GPVDIGRLDLRVGKIIEASKHPDADSL-YVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAM 118 (153)
Q Consensus 40 ~~~df~~ldl~VGkIveve~HP~adKL-~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGM 118 (153)
+++||++++||||+|++|++||+|||| ++|+||+|+++.||||||++|+|.++++.|+++++++||+|++|||+.||||
T Consensus 3 ~~~df~k~di~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GM 82 (109)
T 1gd7_A 3 PLEAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVL 82 (109)
T ss_dssp HHHHHHHSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEECSE
T ss_pred ChHHhhccCEEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEeecCE
Confidence 467899999999999999999999999 9999999975689999999999999999999998889999999999999999
Q ss_pred eecccCC-CceEEecCCC
Q psy15305 119 VMCASTP-DKVEILAPPS 135 (153)
Q Consensus 119 lLCs~~e-~gi~lL~~p~ 135 (153)
|||+.++ .|+.+|.+|.
T Consensus 83 l~sa~~~~~~i~~l~~~~ 100 (109)
T 1gd7_A 83 VLGVPDEAGRVVLLAPDR 100 (109)
T ss_dssp ECEEECTTSCEEEEEESS
T ss_pred EEEeecCCCcEEEEeCCC
Confidence 4444444 4599996654
No 5
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=99.97 E-value=1.3e-31 Score=198.75 Aligned_cols=99 Identities=22% Similarity=0.340 Sum_probs=88.4
Q ss_pred CCCCCCCCCCccCeEEEEEEEEEeCCCCCC-eeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceeccee
Q psy15305 36 DKDEGPVDIGRLDLRVGKIIEASKHPDADS-LYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVT 114 (153)
Q Consensus 36 ~~~e~~~df~~ldl~VGkIveve~HP~adK-L~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~ 114 (153)
+...+++||+++|||||+|+++++||++|| |++|+||+|+.+.|||+||+.|+|.++++.|+++++++||++++|||+.
T Consensus 2 ~~~i~~ddF~kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~ 81 (112)
T 3g48_A 2 NAMANFEDFLTLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFK 81 (112)
T ss_dssp -CCCCHHHHHTCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred CceeCHHHhhceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCee
Confidence 456778899999999999999999999999 9999999997678999999999999999999999899999999999999
Q ss_pred ccceeecccCCCc-eEEecCC
Q psy15305 115 SEAMVMCASTPDK-VEILAPP 134 (153)
Q Consensus 115 SeGMlLCs~~e~g-i~lL~~p 134 (153)
|||||||+.+++| +.||.+|
T Consensus 82 S~GMl~s~~~~~~~~~ll~p~ 102 (112)
T 3g48_A 82 SEVLVLGGVPEAGDVVLLQPN 102 (112)
T ss_dssp ECSEECEEEEETTEEEECCCS
T ss_pred cCcEEeEeecCCCCEEEEeCC
Confidence 9999555545565 7888875
No 6
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.97 E-value=3.5e-31 Score=194.77 Aligned_cols=96 Identities=47% Similarity=0.777 Sum_probs=85.3
Q ss_pred CCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccce
Q psy15305 39 EGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAM 118 (153)
Q Consensus 39 e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGM 118 (153)
.+++||.+++||||+|+++++||+||||++|+||+|+ +.|||+||++|+|.++++.|+.++.++||++++|||+.||||
T Consensus 3 i~~~df~k~dl~VG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GM 81 (107)
T 1mkh_A 3 VKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGM 81 (107)
T ss_dssp CCHHHHHTSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECCC
T ss_pred ecHHHhhccCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeeccE
Confidence 4678999999999999999999999999999999998 689999999999999999999998889999999999999999
Q ss_pred eecccCCCceEEecCCC
Q psy15305 119 VMCASTPDKVEILAPPS 135 (153)
Q Consensus 119 lLCs~~e~gi~lL~~p~ 135 (153)
|||+.++.|+.+|.||.
T Consensus 82 l~s~~~~~gi~~l~p~~ 98 (107)
T 1mkh_A 82 LLAADDGERVALLMPDK 98 (107)
T ss_dssp BCEEECSSCEEECCCSS
T ss_pred EEEccCCCcEEEEeCCC
Confidence 44444456799997653
No 7
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.1e-30 Score=198.65 Aligned_cols=98 Identities=20% Similarity=0.329 Sum_probs=87.0
Q ss_pred CCCCCCCCccCeEEEEEEEEEeCCCCCCe-eEEEEEcCCC-CCeEEEeCCCCcccccccCCeeEEEEeeeecceecceec
Q psy15305 38 DEGPVDIGRLDLRVGKIIEASKHPDADSL-YVEKVELGEP-APRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTS 115 (153)
Q Consensus 38 ~e~~~df~~ldl~VGkIveve~HP~adKL-~v~kVDiG~~-~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~S 115 (153)
..+++||.+++||||+|++|++||+|||| ++|+||+|++ +.||||||+.|+|.++++.|+.+++++||++++|||+.|
T Consensus 22 ~i~~~df~k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~kirGv~S 101 (131)
T 2q2h_A 22 EISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRS 101 (131)
T ss_dssp CCCHHHHHTSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEEE
T ss_pred ccCHHHhhccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcceEECCEEe
Confidence 36788999999999999999999999999 9999999974 579999999999999999999998889999999999999
Q ss_pred cceeecccCC-CceEEecCCC
Q psy15305 116 EAMVMCASTP-DKVEILAPPS 135 (153)
Q Consensus 116 eGMlLCs~~e-~gi~lL~~p~ 135 (153)
+|||||+.++ .|+.+|.+|.
T Consensus 102 eGMl~sa~~~~~gi~lL~p~~ 122 (131)
T 2q2h_A 102 EVLTLGFADANGDIVLAAVER 122 (131)
T ss_dssp CCEECEEECTTSCEEEEEESS
T ss_pred CcEEEEeecCCCcEEEEeCCC
Confidence 9995444444 4698886653
No 8
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=99.96 E-value=8.6e-31 Score=193.90 Aligned_cols=95 Identities=43% Similarity=0.756 Sum_probs=84.8
Q ss_pred CCCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccc
Q psy15305 38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEA 117 (153)
Q Consensus 38 ~e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeG 117 (153)
..+++||+++|||||+|+++++||+||||++|+||+|+ +.|||+||+..+|.++++.|+++++++||++++|||+.|||
T Consensus 3 ~i~~~df~k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S~G 81 (111)
T 1pxf_A 3 TVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSEC 81 (111)
T ss_dssp CSSHHHHHHSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCCCC
T ss_pred ccCHHHhhcccEEEEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEecce
Confidence 36778999999999999999999999999999999997 57999999766667788999999899999999999999999
Q ss_pred eeecccCCCc--eEEecC
Q psy15305 118 MVMCASTPDK--VEILAP 133 (153)
Q Consensus 118 MlLCs~~e~g--i~lL~~ 133 (153)
||||+.+|++ +.++.|
T Consensus 82 MlL~a~~ed~~~~~l~~p 99 (111)
T 1pxf_A 82 MLLCAETDDGSESVLLTP 99 (111)
T ss_dssp CBCEEECTTSCCEEECCC
T ss_pred EEEEecccCCCcEEEEcC
Confidence 9889998765 555555
No 9
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=1.4e-30 Score=194.14 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=86.2
Q ss_pred CCCCCCCccCeEEEEEEEEEeCCCCCCe-eEEEEEcCCC-CCeEEEeCCCCcccccccCCeeEEEEeeeecceecceecc
Q psy15305 39 EGPVDIGRLDLRVGKIIEASKHPDADSL-YVEKVELGEP-APRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSE 116 (153)
Q Consensus 39 e~~~df~~ldl~VGkIveve~HP~adKL-~v~kVDiG~~-~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~Se 116 (153)
.+++||.+++||||+|++|++||+|||| ++|+||+|++ +.||||||++|+|.++++.|+.+++++||+|++|||+.|+
T Consensus 8 i~~~df~k~~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S~ 87 (116)
T 2q2i_A 8 ISYADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSE 87 (116)
T ss_dssp CCHHHHHTSCEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEEEC
T ss_pred eCHHHhhcCCEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCEEeC
Confidence 5678999999999999999999999999 9999999974 5799999999999999999999988899999999999999
Q ss_pred ceeecccCC-CceEEecCCC
Q psy15305 117 AMVMCASTP-DKVEILAPPS 135 (153)
Q Consensus 117 GMlLCs~~e-~gi~lL~~p~ 135 (153)
|||||+.++ .|+.+|.||.
T Consensus 88 GMl~sa~~~~~~i~ll~p~~ 107 (116)
T 2q2i_A 88 VLTLGFADANGDIVLAAVER 107 (116)
T ss_dssp CEECEEECTTSCEEEEEESS
T ss_pred CEEEEeecCCCcEEEEeCCC
Confidence 994444444 4698886653
No 10
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.2e-30 Score=191.07 Aligned_cols=96 Identities=29% Similarity=0.514 Sum_probs=85.0
Q ss_pred CCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccce
Q psy15305 39 EGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAM 118 (153)
Q Consensus 39 e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGM 118 (153)
.+++||.+++||||+|+++++||+||||++|+||+|+ +.||||||++|+|.++++.|+.++.++||++++|||+.||||
T Consensus 7 i~~~df~k~~lrVG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GM 85 (112)
T 2cwp_A 7 YDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGM 85 (112)
T ss_dssp CCHHHHHTSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEECSE
T ss_pred cCHHHhhcCCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecccE
Confidence 5678999999999999999999999999999999998 689999999999999999999998889999999999999999
Q ss_pred eecccCCC-ceEEecCCC
Q psy15305 119 VMCASTPD-KVEILAPPS 135 (153)
Q Consensus 119 lLCs~~e~-gi~lL~~p~ 135 (153)
|||+.+++ ++.+|.+|+
T Consensus 86 l~sa~~~~~~~~il~~~~ 103 (112)
T 2cwp_A 86 LILAETEDGKVYLIPVPE 103 (112)
T ss_dssp ECCEECTTSCEECCBCCT
T ss_pred EEEeecCCCcEEEEECCC
Confidence 44444433 467776654
No 11
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=99.96 E-value=5.9e-31 Score=195.33 Aligned_cols=97 Identities=23% Similarity=0.369 Sum_probs=85.6
Q ss_pred CCCCCCCCccCeEEEEEEEEEeCCCCCCe-eEEEEEcCCC-CCeEEEeCCCCcccccccCCeeEEEEeeeecceecceec
Q psy15305 38 DEGPVDIGRLDLRVGKIIEASKHPDADSL-YVEKVELGEP-APRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTS 115 (153)
Q Consensus 38 ~e~~~df~~ldl~VGkIveve~HP~adKL-~v~kVDiG~~-~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~S 115 (153)
..+++||.+++||||+|+++++||+|||| ++|+||+|++ +.||||||++|+|.++++.|+++++++||++++|||+.|
T Consensus 4 ~i~~~df~k~~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S 83 (113)
T 2nzh_A 4 MAVIDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKS 83 (113)
T ss_dssp CHHHHHHHHCCEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTEEE
T ss_pred ccCHHHhhcCCEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCEEe
Confidence 35678999999999999999999999999 9999999974 579999999999999999999998889999999999999
Q ss_pred cceeecccC-C-CceEEecCCC
Q psy15305 116 EAMVMCAST-P-DKVEILAPPS 135 (153)
Q Consensus 116 eGMlLCs~~-e-~gi~lL~~p~ 135 (153)
+|| ||+.. + .|+.+|.+|.
T Consensus 84 ~GM-l~sa~~~~~~i~ll~~~~ 104 (113)
T 2nzh_A 84 EVL-VLGGIPGQGDVVLLQPDQ 104 (113)
T ss_dssp CSE-ECEEEEETTEEEEEEESS
T ss_pred CCE-EEEeecCCCCEEEEECCC
Confidence 999 55554 3 4587776653
No 12
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=99.96 E-value=3.5e-30 Score=190.54 Aligned_cols=95 Identities=31% Similarity=0.569 Sum_probs=84.4
Q ss_pred CCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccce
Q psy15305 39 EGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAM 118 (153)
Q Consensus 39 e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGM 118 (153)
.+++||.+++||||+|++|++||+||||++|+||+|+ +.|||+||++|+|.++++.|++++.++||++++|||+.||||
T Consensus 7 i~~~df~k~~lrVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GM 85 (111)
T 1pyb_A 7 IGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGM 85 (111)
T ss_dssp CCHHHHHHSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBSSE
T ss_pred cCHHHhccCCEEEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccEeeccE
Confidence 6788999999999999999999999999999999998 689999999999999999999998899999999999999999
Q ss_pred eecccCCC-ceEEecCCC
Q psy15305 119 VMCASTPD-KVEILAPPS 135 (153)
Q Consensus 119 lLCs~~e~-gi~lL~~p~ 135 (153)
||+..++ ...++.+|.
T Consensus 86 -l~sa~e~~~~~il~~~~ 102 (111)
T 1pyb_A 86 -ILAASDGENLSVIVPDR 102 (111)
T ss_dssp -ECEEECSSCEEEEEESS
T ss_pred -EEEeccCCceEEEECCC
Confidence 5555443 355665543
No 13
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=99.89 E-value=3.2e-23 Score=167.02 Aligned_cols=72 Identities=32% Similarity=0.488 Sum_probs=63.6
Q ss_pred cCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEE---------eeeecceecceeccc
Q psy15305 47 LDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL---------CNLKPAKMRGVTSEA 117 (153)
Q Consensus 47 ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~---------~nlk~rki~Gv~SeG 117 (153)
-++|||+|++|++||+||||++|+||+|+ +.||||||++|++. |+++++. +||++++|||+.|+|
T Consensus 91 ~~vvVG~V~~~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~~-----G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~G 164 (199)
T 3bu2_A 91 PKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVEA-----GQKVVVAKVGAVMPSGMVIKDAELRGVASSG 164 (199)
T ss_dssp CSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCCT-----TCEEEEECTTCBCTTSCBCCEEEETTEEEES
T ss_pred CCeEEEEEEEEEECCCCCEEEEEEEEeCC-EEEEEEeCCchhhC-----CCEEEEEecCCCccCCceEeeeEEcCceecc
Confidence 48999999999999999999999999995 68999999999853 4444443 899999999999999
Q ss_pred eeecccCC
Q psy15305 118 MVMCASTP 125 (153)
Q Consensus 118 MlLCs~~e 125 (153)
| |||.+|
T Consensus 165 M-lcSa~E 171 (199)
T 3bu2_A 165 M-ICSMKE 171 (199)
T ss_dssp E-ECCTTT
T ss_pred E-Eeehhh
Confidence 9 898875
No 14
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.89 E-value=7.3e-25 Score=202.09 Aligned_cols=96 Identities=47% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccc
Q psy15305 38 DEGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEA 117 (153)
Q Consensus 38 ~e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeG 117 (153)
..+++||.+++||||+|++|++||++|||++|+||+|+ +.||||||+.|+|.++++.|+++++++||+|++|+|+.|+|
T Consensus 617 ~i~~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~g 695 (722)
T 1rqg_A 617 YVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQG 695 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccHhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccCe
Confidence 36778999999999999999999999999999999998 57999999999999999999999889999999999999999
Q ss_pred eeecccCCCceEEecCC
Q psy15305 118 MVMCASTPDKVEILAPP 134 (153)
Q Consensus 118 MlLCs~~e~gi~lL~~p 134 (153)
||||+.+++||.+|.++
T Consensus 696 M~~~~~~~~~i~~l~~~ 712 (722)
T 1rqg_A 696 MLLAADDGERVALLMPD 712 (722)
T ss_dssp -----------------
T ss_pred EEEEeeCCCcEEEeCCC
Confidence 95554445678888764
No 15
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.87 E-value=2.3e-22 Score=166.07 Aligned_cols=87 Identities=29% Similarity=0.387 Sum_probs=73.4
Q ss_pred CCCCCCCccCeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEEeeeecceecceeccce
Q psy15305 39 EGPVDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLLCNLKPAKMRGVTSEAM 118 (153)
Q Consensus 39 e~~~df~~ldl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~~nlk~rki~Gv~SeGM 118 (153)
+...+|.+++||||+|++|++||+||||++|+||+|+ +.||||||+.|++. | .+++++||++++|+|+.|+||
T Consensus 128 ~~~~~f~kldirVGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~~-----G-~vVvVAnLpp~klrGv~SeGM 200 (241)
T 2e8g_A 128 KINDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVKE-----G-NRVAVALLPPRNFFGIVSEGM 200 (241)
T ss_dssp SCCCGGGGSCEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCCT-----T-CEEEEECCCCEEETTEEECCE
T ss_pred CccCcccccCEEEEEEEEEEECCCCCccEEEEEEeCC-ceEEEEECCccccC-----C-CEEEEEECCCcccCCcccCcE
Confidence 3446899999999999999999999999999999998 58999999999654 4 344779999999999999999
Q ss_pred eecccCCCceEEecCCCC
Q psy15305 119 VMCASTPDKVEILAPPSS 136 (153)
Q Consensus 119 lLCs~~e~gi~lL~~p~g 136 (153)
||+..| |+ ...++|
T Consensus 201 -lcsa~E-gl--~~~~~G 214 (241)
T 2e8g_A 201 -FLGAGE-GV--LKNVKG 214 (241)
T ss_dssp -ECEETT-EE--CCBCBS
T ss_pred -EeECcc-CC--CCCCCC
Confidence 777776 43 344444
No 16
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.80 E-value=7.9e-20 Score=170.78 Aligned_cols=85 Identities=31% Similarity=0.484 Sum_probs=70.7
Q ss_pred CeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEE---------eeeecceecceeccce
Q psy15305 48 DLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL---------CNLKPAKMRGVTSEAM 118 (153)
Q Consensus 48 dl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~---------~nlk~rki~Gv~SeGM 118 (153)
+|+||+|++|++||++|||++|+||+|+++.+|||||++|+.. |.++++. +||++++|||+.|+||
T Consensus 44 ~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~~-----g~~v~va~~Ga~l~~~~~ik~~k~rG~~S~GM 118 (795)
T 3pco_B 44 GVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQ-----GLRVAVATIGAVLPGDFKIKAAKLRGEPSEGM 118 (795)
T ss_dssp CEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCCSSCCT-----TCEEEEECTTCBCTTSCBCCCEESSSSEESSE
T ss_pred CeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCCccccC-----CCEEEEEecCcCcCCCceEcccccCCeecCcE
Confidence 6999999999999999999999999998778999999999862 3443332 7999999999999999
Q ss_pred eecccCCC-------ceEEecC--CCCCe
Q psy15305 119 VMCASTPD-------KVEILAP--PSSDQ 138 (153)
Q Consensus 119 lLCs~~e~-------gi~lL~~--p~g~~ 138 (153)
|||.+|+ ||.+|+. |.|++
T Consensus 119 -lcs~~elgl~~~~~gi~~l~~~~~~G~~ 146 (795)
T 3pco_B 119 -LCSFSELGISDDHSGIIELPADAPIGTD 146 (795)
T ss_dssp -ECCSGGGTSCCCCSSCCEECSSCCTTSB
T ss_pred -ecchhhcCCCCCCCeEEECCccccCCCC
Confidence 9998863 5666643 44554
No 17
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.75 E-value=3.4e-19 Score=166.37 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=71.9
Q ss_pred CeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcc----cccccCCeeEEE-Eeeeecceecceeccceeecc
Q psy15305 48 DLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFV----PIEQMQNRMVVL-LCNLKPAKMRGVTSEAMVMCA 122 (153)
Q Consensus 48 dl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~----~~~~l~gk~vv~-~~nlk~rki~Gv~SeGMlLCs 122 (153)
+++||+|++|++||++ ||++|+||+| +.+|||||++|++ .+..+.|+.+.. ++||+++||||+.|+|| |||
T Consensus 44 ~~~vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GM-lcs 119 (785)
T 1b7y_B 44 GVVFARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGM-ALS 119 (785)
T ss_dssp TEEEEEEEEEEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSE-ECC
T ss_pred CeEEEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccccccce-eee
Confidence 7999999999999999 9999999999 5799999999984 344555655545 68999999999999999 899
Q ss_pred cCC-------CceEEecC---CCCCee
Q psy15305 123 STP-------DKVEILAP---PSSDQC 139 (153)
Q Consensus 123 ~~e-------~gi~lL~~---p~g~~~ 139 (153)
..| +||.+|+. |.|+++
T Consensus 120 ~~eLgl~~~~~gi~~l~~~~~~~G~~~ 146 (785)
T 1b7y_B 120 PRELGVGEYGGGLLEFPEDALPPGTPL 146 (785)
T ss_dssp HHHHTSCSCCSSCCCBCTTSSCTTCBG
T ss_pred HHHhCCCCCCCceEECccccccCCCcH
Confidence 864 45666642 345554
No 18
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.67 E-value=5.2e-17 Score=151.63 Aligned_cols=68 Identities=32% Similarity=0.488 Sum_probs=60.3
Q ss_pred CeEEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCCCcccccccCCeeEEEE---------eeeecceecceeccce
Q psy15305 48 DLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL---------CNLKPAKMRGVTSEAM 118 (153)
Q Consensus 48 dl~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~n~~~~~~l~gk~vv~~---------~nlk~rki~Gv~SeGM 118 (153)
+|+||+|++|++| ||++|+||+|+++.+|||||++|+. .|.++++. +||+++|+||+.|+||
T Consensus 44 ~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~v~va~~Ga~lpg~~~ik~~klrG~~S~GM 114 (795)
T 2rhq_B 44 NLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCGAPNVD-----AGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGM 114 (795)
T ss_dssp EEEEEEEEEEECS----SSCEEEEECSSSSCEEEECCCTTCC-----TTCEEEEEEEEEEETTTEECCCEEETTEEECSE
T ss_pred CeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeCCchhh-----CCCEEEEEecCcCcCCCceEcceeecCccccce
Confidence 7999999999999 9999999999866899999999985 35555444 7999999999999999
Q ss_pred eecccCC
Q psy15305 119 VMCASTP 125 (153)
Q Consensus 119 lLCs~~e 125 (153)
|||..|
T Consensus 115 -lcs~~e 120 (795)
T 2rhq_B 115 -ICSLQE 120 (795)
T ss_dssp -ECCSGG
T ss_pred -eeeHHH
Confidence 899875
No 19
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=52.79 E-value=24 Score=26.63 Aligned_cols=34 Identities=21% Similarity=-0.046 Sum_probs=26.9
Q ss_pred EEEEEEEEEeCCCCCCeeEEEEEcCCCCCeEEEeCCC
Q psy15305 50 RVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLV 86 (153)
Q Consensus 50 ~VGkIveve~HP~adKL~v~kVDiG~~~~r~IVsga~ 86 (153)
+||.|+.++..+ +.++.+||.|.+..+.+++-..
T Consensus 52 IvGiVv~~~~~~---~~~~ytIDD~TG~~I~cv~w~~ 85 (159)
T 3kf6_A 52 IVGYIAAIDIYE---GKHVLTVDDCSGMVLRVVFIIQ 85 (159)
T ss_dssp EEEEEEEEEEET---TEEEEEEECSSSCEEEEEEEGG
T ss_pred EEEEEEEEEEeC---CEEEEEEecCCCCeEEEEEEcc
Confidence 689999999764 5699999999865677777443
No 20
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=29.06 E-value=1e+02 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=27.5
Q ss_pred EEEEEEEEEeCCCC-----CCeeEEEEEcCCCCCeEEEeCC
Q psy15305 50 RVGKIIEASKHPDA-----DSLYVEKVELGEPAPRTVVSGL 85 (153)
Q Consensus 50 ~VGkIveve~HP~a-----dKL~v~kVDiG~~~~r~IVsga 85 (153)
++|.|+.+..+... ....+++||.+.+....|+|..
T Consensus 90 IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~ 130 (220)
T 3kf8_A 90 IFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRL 130 (220)
T ss_dssp EEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEE
T ss_pred EEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEe
Confidence 68999999988743 3589999999987544566643
No 21
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.91 E-value=47 Score=26.97 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=12.5
Q ss_pred EEEEEEEEEeCCCC
Q psy15305 50 RVGKIIEASKHPDA 63 (153)
Q Consensus 50 ~VGkIveve~HP~a 63 (153)
+||+|.+++.||.+
T Consensus 195 riG~I~~ie~~~gs 208 (243)
T 3j20_E 195 RKGRIVEIKRFPMG 208 (243)
T ss_dssp CEEEEEECCCCCSS
T ss_pred EEEEEEEEEEecCC
Confidence 68999999999987
No 22
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.13 E-value=49 Score=27.26 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=17.7
Q ss_pred EEEEEEEEEeCCCCCCeeEEEEEcC
Q psy15305 50 RVGKIIEASKHPDADSLYVEKVELG 74 (153)
Q Consensus 50 ~VGkIveve~HP~adKL~v~kVDiG 74 (153)
+||.|.+++.||.+-. ++.|...
T Consensus 191 riG~I~~ie~~~gs~~--iV~vkd~ 213 (265)
T 3iz6_D 191 RVGVIKNREKHKGSFE--TIHVEDA 213 (265)
T ss_dssp CEEEEEEEECCSSSCC--EEEECCC
T ss_pred EEEEEEEEEEecCCCc--EEEEEEC
Confidence 6999999999999644 6666543
Done!