RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15305
(153 letters)
>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 91.6 bits (227), Expect = 7e-25
Identities = 73/94 (77%), Positives = 86/94 (91%)
Query: 42 VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
+D+ RLDLR+G II A KHPDADSLYVE+V++GE APRTVVSGLV VP+EQMQNRMV+L
Sbjct: 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVIL 60
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
LCNLKPAKMRGV S+AMVMCAS+P+K+EILAPP+
Sbjct: 61 LCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPN 94
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 87.7 bits (217), Expect = 5e-24
Identities = 45/93 (48%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D +LDLRVGKIIE HP+AD LYV KV+LG+ RT+V+GL K+ E++ NR VV++
Sbjct: 7 DFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPEELLNRYVVVV 65
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
NL+P K+RG+ S+ M++ A ++V +L P
Sbjct: 66 ANLEPKKLRGIGSQGMLLAADDGERVALLMPDK 98
>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Escherichia coli [TaxId: 562]}
Length = 111
Score = 84.6 bits (209), Expect = 9e-23
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D RL++RVGKI+E +H +AD LY+ +V++G+ V+ LV + E++ + VV+L
Sbjct: 8 DFARLEMRVGKIVEVKRHENADKLYIVQVDVGQK-TLQTVTSLVPYYSEEELMGKTVVVL 66
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVE-ILAPPSSD 137
CNL+ AKMRG TSE M++CA T D E +L P
Sbjct: 67 CNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM 102
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 84.2 bits (208), Expect = 1e-22
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVLL 102
D ++DLRV K++ A + ++ L + LG+ RTVV+G+ K+ E++ + +V++
Sbjct: 7 DFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDE-ERTVVAGIAKYYTPEELVGKKIVIV 65
Query: 103 CNLKPAKMRGVTSEAMVMCASTPDKVEILAPPS 135
NLKP K+ G+ S+ M++ AS + + ++ P
Sbjct: 66 ANLKPRKIFGIESQGMILAASDGENLSVIVPDR 98
>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA
synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 85.8 bits (212), Expect = 1e-22
Identities = 64/116 (55%), Positives = 82/116 (70%), Gaps = 7/116 (6%)
Query: 42 VDIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLVKFVPIEQMQNRMVVL 101
V RLD+RVGKII KHPDADSLYVEK+++GE PRTVVSGLV+FVP E++Q+R+VV+
Sbjct: 4 VIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVV 63
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPD---KVEILAPPSS----DQCFIGSFSSSIPY 150
LCNLKP KMRGV S+ M++CAS +VE L PP+ + F+ + P
Sbjct: 64 LCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPD 119
>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus
[TaxId: 274]}
Length = 109
Score = 70.8 bits (173), Expect = 2e-17
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 43 DIGRLDLRVGKIIEASKHPDADSLYVEKVELGEPAP-RTVVSGLVKFVPIEQMQNRMVVL 101
LDLRVG+++ A H A + P + + + + E + R+VV
Sbjct: 6 AFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVC 65
Query: 102 LCNLKPAKMRGVTSEAMVMCASTPD-KVEILAPPSS 136
NL ++ G SE +V+ +V +LAP
Sbjct: 66 AVNLGAKRVAGFLSEVLVLGVPDEAGRVVLLAPDRE 101
>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus
thermophilus [TaxId: 274]}
Length = 113
Score = 46.1 bits (109), Expect = 7e-08
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 51 VGKIIEASKHPDADSLYVEKVELGEPAPRTVVSGLV-----KFVPIEQMQNRMVVLLCNL 105
+++EA P L ++ G VVSG V + + L +
Sbjct: 9 FARVLEAHPIPGTR-LKRLVLDAGR--TVEVVSGAENARKGIGVALALPGTELPGLGQKV 65
Query: 106 KPAKMRGVTSEAMVMCAS 123
++GV S M +
Sbjct: 66 GERVIQGVRSFGMALSPR 83
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium
channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 24.1 bits (52), Expect = 4.8
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 7 KSPVDKDTSTKPEKPAKTKPAKAAAP-----KPSDKDEGPVDIGRLDLRVGKIIEASKHP 61
+ ++ + EK AKTKP A + +D+ PV + + +
Sbjct: 1 RREAERQAQAQLEK-AKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKF 59
Query: 62 DADSLYVEKVELGE-----PAPRTV 81
+ D V+ G P+P +
Sbjct: 60 NNDWWIGRLVKEGCEIGFIPSPVKL 84
>d4sbva_ b.121.4.7 (A:) Sobemovirus coat protein {SBMV (Southern
bean mosaic virus), cow pea strain [TaxId: 12139]}
Length = 199
Score = 24.1 bits (52), Expect = 8.1
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 8 SPVDKDTSTKPEKPAKTKPAKAAAPKPSDKDEGPVDIGRLDLRVGKIIEASKHPDADSLY 67
+D + ++ P KT A A + + RL + + LY
Sbjct: 124 IALDTNEVSEKRYPFKTATDYATAVGVNANIGNILVPARLVTAMEGGSSKTAVNTGR-LY 182
Query: 68 VE-KVELGEPAPRTV 81
+ L EP +
Sbjct: 183 ASYTIRLIEPIAAAL 197
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,176
Number of extensions: 20994
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 10
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.7 bits)