BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15307
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y1U|A Chain A, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|B Chain B, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|C Chain C, Structure Of Unphosphorylated Stat5a
Length = 585
Score = 292 bits (747), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/271 (55%), Positives = 191/271 (70%), Gaps = 8/271 (2%)
Query: 138 SVKAQIICESQANALLKNEKIGKSDASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKR 197
VKA II E QA +LLKNE +++ SGEILNN VMEY+ + LS RNM LK+IKR
Sbjct: 241 QVKATIISEQQAKSLLKNENT-RNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKR 299
Query: 198 RPEKRGTESVMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITWD 257
++RG ESV +EKF++ F S FS+G ELVFQV TLSLPVVVIVHG+Q+ NA AT+ WD
Sbjct: 300 -ADRRGAESVTEEKFTVLFESQFSVGSNELVFQVKTLSLPVVVIVHGSQDHNATATVLWD 358
Query: 258 NAFAEPGRSPFVVPDKRPWKMIADVLMMKF--ESATGRTLDAENLNFLAEKAFRQATDIK 315
NAFAEPGR PF VPDK W + + L MKF E + R L ENL FLA+K F +I
Sbjct: 359 NAFAEPGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLF----NIS 414
Query: 316 MAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKR 375
DY++M ++WSQF +E LP ++TFW WF VM++ ++H K W DG I+GFV K+
Sbjct: 415 SNHLEDYNSMSVSWSQFNRENLPGWNYTFWQWFDGVMEVLKKHHKPHWNDGAILGFVNKQ 474
Query: 376 KAEEMLASQVKGTFLLRFSDSELGGITIAWK 406
+A ++L ++ GTFLLRFSDSE+GGITIAWK
Sbjct: 475 QAHDLLINKPDGTFLLRFSDSEIGGITIAWK 505
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 74/95 (77%), Gaps = 5/95 (5%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTE--VFMLQPFTSKDFQIRNLADRISDLPH 58
+L ++ GTFLLRFSDSE+GGITIAWK D+ + ++ L+PFT++DF IR+LADR+ DL +
Sbjct: 479 LLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKPFTTRDFSIRSLADRLGDLNY 538
Query: 59 LVYLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVKP 93
L+Y++PD+PKD+ F+KYYTP +GYVKP
Sbjct: 539 LIYVFPDRPKDEVFAKYYTPVLAK---AVDGYVKP 570
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 380 MLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGELVF 439
M Q GT F + L I A ++RG SV +EKF++ F S FS+G ELVF
Sbjct: 276 MEYHQATGTLSAHFRNMSLKRIKRA-----DRRGAESVTEEKFTVLFESQFSVGSNELVF 330
Query: 440 QL 441
Q+
Sbjct: 331 QV 332
>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX
Length = 575
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 127/243 (52%), Gaps = 26/243 (10%)
Query: 178 THSKV----------LSISLRNMQLKKIKRRPEK--RGTESVMDEKFSLYFSSTFSIGGG 225
TH+KV L+ R++QLK+ K + G V +E SL F + G
Sbjct: 250 THTKVMNMEESTNGSLAAEFRHLQLKEQKNAGTRTNEGPLIVTEELHSLSFETQLCQPG- 308
Query: 226 ELVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAF-AEP-GRSPFVVPDKRPWKMIADVL 283
LV + T SLPVVVI + +Q P+ A+I W N AEP S F+ P W +++VL
Sbjct: 309 -LVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLTPPCARWAQLSEVL 367
Query: 284 MMKFESATGRTLDAENLNFLAEKAFRQATDIKMAECADYSNMLLNWSQFCKEPLPDRSFT 343
+F S T R L+ + LN L EK + L+ W++FCKE + D++F
Sbjct: 368 SWQFSSVTKRGLNVDQLNMLGEKLLGPNAS---------PDGLIPWTRFCKENINDKNFP 418
Query: 344 FWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSEL-GGIT 402
FW W ++++L ++HL +W DG IMGF+ K + +L Q GTFLLRFS+S G IT
Sbjct: 419 FWLWIESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAIT 478
Query: 403 IAW 405
W
Sbjct: 479 FTW 481
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 19/107 (17%)
Query: 1 MLASQVKGTFLLRFSDSEL-GGITIAW-----KGDNTEVFMLQPFTSKDFQ-------IR 47
+L Q GTFLLRFS+S G IT W G + ++P+T K+ IR
Sbjct: 455 LLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIR 514
Query: 48 NL----ADRISDLPHLVYLYPDKPKDQAFSKYYT-PFQDSQPMGTNG 89
N A+ I + P L YLYP+ KD AF KYY+ P + +PM +G
Sbjct: 515 NYKVMAAENIPENP-LKYLYPNIDKDHAFGKYYSRPKEAPEPMELDG 560
>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1
pdb|1YVL|B Chain B, Structure Of Unphosphorylated Stat1
Length = 683
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 127/243 (52%), Gaps = 26/243 (10%)
Query: 178 THSKV----------LSISLRNMQLKKIKRRPEK--RGTESVMDEKFSLYFSSTFSIGGG 225
TH+KV L+ R++QLK+ K + G V +E SL F + G
Sbjct: 385 THTKVMNMEESTNGSLAAEFRHLQLKEQKNAGTRTNEGPLIVTEELHSLSFETQLCQPG- 443
Query: 226 ELVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAF-AEP-GRSPFVVPDKRPWKMIADVL 283
LV + T SLPVVVI + +Q P+ A+I W N AEP S F+ P W +++VL
Sbjct: 444 -LVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLTPPCARWAQLSEVL 502
Query: 284 MMKFESATGRTLDAENLNFLAEKAFRQATDIKMAECADYSNMLLNWSQFCKEPLPDRSFT 343
+F S T R L+ + LN L EK + L+ W++FCKE + D++F
Sbjct: 503 SWQFSSVTKRGLNVDQLNMLGEKLLGPNAS---------PDGLIPWTRFCKENINDKNFP 553
Query: 344 FWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSEL-GGIT 402
FW W ++++L ++HL +W DG IMGF+ K + +L Q GTFLLRFS+S G IT
Sbjct: 554 FWLWIESILELIKKHLLPLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAIT 613
Query: 403 IAW 405
W
Sbjct: 614 FTW 616
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 1 MLASQVKGTFLLRFSDSEL-GGITIAW-----KGDNTEVFMLQPFTSKDFQ-------IR 47
+L Q GTFLLRFS+S G IT W G + ++P+T K+ IR
Sbjct: 590 LLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIR 649
Query: 48 NL----ADRISDLPHLVYLYPDKPKDQAFSKYYT 77
N A+ I + P L YLYP+ KD AF KYY+
Sbjct: 650 NYKVMAAENIPENP-LKYLYPNIDKDHAFGKYYS 682
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 26/267 (9%)
Query: 157 KIGKSDASGEILNNMGVMEYN---THSKVLSISLRN-----MQLKKIKRRPEKRGTESVM 208
K+ SG++ G ++N T++KV+++ N + K + R ++ G
Sbjct: 239 KVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGNGGRA 298
Query: 209 DEKFSLYFSSTFSIGGGE-------LVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAFA 261
+ SL + + E L + T SLPVVVI + Q PNA A+I W N
Sbjct: 299 NCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWYNMLT 358
Query: 262 EPGRSP--FVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQATDIKMAEC 319
++ F P W +A+VL +F S T R L E L LAEK +
Sbjct: 359 NNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKL--------LGPG 410
Query: 320 ADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEE 379
+YS + W++FCKE + + F+FW W ++ L ++++ +W +G+IMGF+ K +
Sbjct: 411 VNYSGCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERA 470
Query: 380 MLASQVKGTFLLRFSD-SELGGITIAW 405
+L+++ GTFLLRFS+ S+ GG+T W
Sbjct: 471 ILSTKPPGTFLLRFSESSKEGGVTFTW 497
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 15/112 (13%)
Query: 1 MLASQVKGTFLLRFSDS-ELGGITIAWK----GDNTEVFMLQPFTSKDFQIRNLAD---- 51
+L+++ GTFLLRFS+S + GG+T W +T++ ++P+T + + A+
Sbjct: 471 ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYTKQQLNNMSFAEIIMG 530
Query: 52 -RISDLPH-----LVYLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVKPVLVT 97
+I D + LVYLYPD PK++AF KY P P G P L T
Sbjct: 531 YKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPGSAAPXLKT 582
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 26/267 (9%)
Query: 157 KIGKSDASGEILNNMGVMEYN---THSKVLSISLRN-----MQLKKIKRRPEKRGTESVM 208
K+ SG++ G ++N T++KV+++ N + K + R ++ G
Sbjct: 239 KVCIDKDSGDVAALRGSRKFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQRCGNGGRA 298
Query: 209 DEKFSLYFSSTFSIGGGE-------LVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAFA 261
+ SL + + E L + T SLPVVVI + Q PNA A+I W N
Sbjct: 299 NCDASLIVTEELHLITFETEVYHQGLKIDLETHSLPVVVISNICQMPNAWASILWYNMLT 358
Query: 262 EPGRSP--FVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQATDIKMAEC 319
++ F P W +A+VL +F S T R L E L LAEK +
Sbjct: 359 NNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKL--------LGPG 410
Query: 320 ADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEE 379
+YS + W++FCKE + + F+FW W ++ L ++++ +W +G+IMGF+ K +
Sbjct: 411 VNYSGCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMGFISKERERA 470
Query: 380 MLASQVKGTFLLRFSD-SELGGITIAW 405
+L+++ GTFLLRFS+ S+ GG+T W
Sbjct: 471 ILSTKPPGTFLLRFSESSKEGGVTFTW 497
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 15/90 (16%)
Query: 1 MLASQVKGTFLLRFSDS-ELGGITIAWKGDN----TEVFMLQPFTSKDFQIRNLAD---- 51
+L+++ GTFLLRFS+S + GG+T W + T++ ++P+T + + A+
Sbjct: 471 ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGKTQIQSVEPYTKQQLNNMSFAEIIMG 530
Query: 52 -RISDLPH-----LVYLYPDKPKDQAFSKY 75
+I D + LVYLYPD PK++AF KY
Sbjct: 531 YKIMDATNILVSPLVYLYPDIPKEEAFGKY 560
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 344 FWDWFYAVMKLTR--EHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGI 401
FW WF M+ R H+ +W +G I G++ +++ + L +Q GTF++RFS+ G
Sbjct: 328 FWVWFGKSMQTLRYQRHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQF 387
Query: 402 TIAWKG 407
IA+ G
Sbjct: 388 GIAYIG 393
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 30 NTEVFMLQPFTSKDFQIRNLADRISDLPHLVYLYPDKPKDQAFSKYYTPFQDSQPMGTNG 89
NT++ M T D Q++ LA RI + Q F Y P S +G G
Sbjct: 137 NTQIEMCDALTDPDAQLQTLATRI--------------EAQGFRPYVIPVGGSSALGAMG 182
Query: 90 YVKPVL 95
YV+ L
Sbjct: 183 YVESAL 188
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 30 NTEVFMLQPFTSKDFQIRNLADRISDLPHLVYLYPDKPKDQAFSKYYTPFQDSQPMGTNG 89
NT++ M T D Q++ LA RI + Q F Y P S +G G
Sbjct: 137 NTQIEMCDALTDPDAQLQTLATRI--------------EAQGFRPYVIPVGGSSALGAMG 182
Query: 90 YVKPVL 95
YV+ L
Sbjct: 183 YVESAL 188
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 30 NTEVFMLQPFTSKDFQIRNLADRISDLPHLVYLYPDKPKDQAFSKYYTPFQDSQPMGTNG 89
NT++ M T D Q++ LA RI + Q F Y P S +G G
Sbjct: 137 NTQIEMCDALTDPDAQLQTLATRI--------------EAQGFRPYVIPVGGSSALGAMG 182
Query: 90 YVKPVL 95
YV+ L
Sbjct: 183 YVESAL 188
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKG 407
G + + AE +L SQ G+FL+R S S + G T+++K
Sbjct: 21 GAISREDAENLLESQPLGSFLIRVSHSHV-GYTLSYKA 57
>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2F2A|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
pdb|2G5H|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|B Chain B, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|B Chain B, The High Resolution Structure Of Gatcab
Length = 483
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 61 YLYPDKPKDQAFSKYYTPFQDSQPMGTNGYV 91
Y YPD PK S++ QP+G NGY+
Sbjct: 81 YFYPDNPKAYQISQF------DQPIGENGYI 105
>pdb|1BMB|A Chain A, Grb2-Sh2 Domain In Complex With KpfyVnvef (Pkf270-974)
Length = 123
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 16 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 57
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 15 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 56
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 9 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 50
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 442 FISMNTSRIGEDIEPLLLVPTPRNIVVDGPPPYAED 477
F+S + I ED+ +LL P R D P PYA+D
Sbjct: 269 FVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQD 304
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 9 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 50
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 10 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 51
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 9 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 50
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 14 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 55
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 61 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 102
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 10 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 51
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 6 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 47
>pdb|1ZFP|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With A Phosphotyrosyl Pentapeptide
Length = 98
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 6 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 47
>pdb|1CJ1|A Chain A, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|B Chain B, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|C Chain C, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|D Chain D, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|F Chain F, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|G Chain G, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|H Chain H, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|I Chain I, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|J Chain J, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|K Chain K, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
pdb|1CJ1|L Chain L, Growth Factor Receptor Binding Protein Sh2 Domain (Human)
Complexed With A Phosphotyrosyl Derivative
Length = 96
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 46
>pdb|2AOA|A Chain A, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOA|B Chain B, Crystal Structures Of A High-affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|A Chain A, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|B Chain B, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|C Chain C, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
pdb|2AOB|D Chain D, Crystal Structures Of A High-Affinity Macrocyclic Peptide
Mimetic In Complex With The Grb2 Sh2 Domain
Length = 99
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 7 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 48
>pdb|1TZE|E Chain E, Signal Transduction Adaptor Growth Factor, Grb2 Sh2 Domain
Complexed With Phosphotyrosyl Heptapeptide
Lys-Pro-Phe-Ptyr-Val-Asn-Val-Nh2 (Kfppyvnc-Nh2)
pdb|3N7Y|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
pdb|3N7Y|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
20-Membered Macrocyclic Ligand Having The Sequence Pyvnv
Length = 98
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 7 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 48
>pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 172 GVMEY--NTHSKVLSISLRNMQLKKIKRRPEKRGTESVMDEKFSLYFSSTFSI 222
G M + T KVL+ SL N+ L K+K E RG D+ +L S + I
Sbjct: 1 GAMNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEI 53
>pdb|3MXC|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications.
pdb|3MXY|A Chain A, Structures Of Grb2-Sh2 Domain And Aicd Peptide Complexes
Reveal A Conformational Switch And Their Functional
Implications
Length = 101
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 10 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 51
>pdb|1GHU|A Chain A, Nmr Solution Structure Of Growth Factor Receptor-Bound
Protein 2 (Grb2) Sh2 Domain, 24 Structures
Length = 107
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 368 IMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGG 408
G + + KAEEML+ Q G FL+R S+S G +++ K G
Sbjct: 4 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG 45
>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|E Chain E, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|H Chain H, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|K Chain K, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|N Chain N, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|Q Chain Q, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|T Chain T, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|W Chain W, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 61 YLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVK 92
Y YPD PK S+Y +P+ TNG+V+
Sbjct: 83 YFYPDLPKGYQISQY------EKPLATNGWVE 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,889,380
Number of Sequences: 62578
Number of extensions: 604579
Number of successful extensions: 1722
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 71
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)