Query psy15307
Match_columns 499
No_of_seqs 402 out of 896
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 17:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02864 STAT_bind: STAT prote 100.0 2.7E-65 5.8E-70 504.5 8.8 211 134-357 42-254 (254)
2 KOG3667|consensus 100.0 1.8E-64 3.8E-69 543.4 13.6 270 132-412 340-610 (682)
3 KOG3667|consensus 99.8 4E-21 8.6E-26 208.7 5.8 96 2-100 579-676 (682)
4 KOG2362|consensus 99.8 6E-20 1.3E-24 184.0 6.0 121 365-499 142-268 (336)
5 COG3217 Uncharacterized Fe-S p 99.7 1.4E-17 3.1E-22 164.9 7.8 114 360-499 88-205 (270)
6 PLN02724 Molybdenum cofactor s 99.7 4.8E-17 1E-21 185.0 8.9 122 360-499 611-744 (805)
7 PF03473 MOSC: MOSC domain; I 99.4 3.4E-13 7.3E-18 121.0 5.3 66 423-499 12-84 (133)
8 PF00017 SH2: SH2 domain; Int 97.5 9.3E-05 2E-09 60.1 3.8 43 367-409 1-44 (77)
9 smart00252 SH2 Src homology 2 97.4 0.00023 5E-09 58.7 4.9 51 366-417 2-52 (84)
10 cd00173 SH2 Src homology 2 dom 97.2 0.00044 9.5E-09 57.7 4.3 43 367-409 2-44 (94)
11 PF00017 SH2: SH2 domain; Int 97.2 9.8E-05 2.1E-09 60.0 0.2 34 1-35 14-48 (77)
12 cd00173 SH2 Src homology 2 dom 96.8 0.00052 1.1E-08 57.3 1.6 37 1-38 15-51 (94)
13 smart00252 SH2 Src homology 2 96.8 0.0016 3.5E-08 53.6 4.0 34 1-35 16-49 (84)
14 KOG3601|consensus 92.4 0.085 1.8E-06 52.0 2.4 78 367-446 60-140 (222)
15 PRK14499 molybdenum cofactor b 91.9 0.22 4.8E-06 51.9 5.0 62 434-499 200-266 (308)
16 KOG4637|consensus 90.8 0.094 2E-06 55.4 0.9 76 370-451 28-112 (464)
17 PF02864 STAT_bind: STAT prote 89.0 0.2 4.4E-06 50.8 1.6 68 135-208 40-109 (254)
18 KOG1785|consensus 88.1 2 4.4E-05 46.2 8.3 133 244-411 169-304 (563)
19 PF02761 Cbl_N2: CBL proto-onc 84.4 0.4 8.7E-06 41.0 0.7 78 246-357 3-80 (85)
20 KOG2142|consensus 80.9 0.64 1.4E-05 52.5 0.8 38 456-499 624-661 (728)
21 KOG1930|consensus 79.8 1.8 3.8E-05 46.8 3.6 35 372-406 219-253 (483)
22 KOG4792|consensus 72.8 4.9 0.00011 40.5 4.4 41 367-407 13-53 (293)
23 KOG4637|consensus 69.9 0.91 2E-05 48.3 -1.5 59 369-431 336-396 (464)
24 KOG4278|consensus 66.4 5.4 0.00012 45.7 3.5 60 367-427 154-213 (1157)
25 KOG1930|consensus 57.7 6.3 0.00014 42.8 2.0 42 1-43 227-268 (483)
26 KOG1264|consensus 54.6 11 0.00024 44.1 3.3 49 357-408 530-584 (1267)
27 KOG4226|consensus 54.0 19 0.00041 37.3 4.5 42 367-408 283-325 (379)
28 PF02762 Cbl_N3: CBL proto-onc 52.9 37 0.00079 28.9 5.3 56 5-66 23-79 (86)
29 KOG0790|consensus 51.7 15 0.00032 40.4 3.6 41 369-409 114-155 (600)
30 PRK11536 6-N-hydroxylaminopuri 49.9 18 0.00039 36.2 3.6 57 436-499 54-120 (223)
31 KOG2996|consensus 49.4 14 0.00031 41.8 3.0 41 367-407 687-729 (865)
32 KOG2996|consensus 48.5 18 0.00038 41.1 3.6 27 2-28 701-729 (865)
33 KOG1264|consensus 42.4 27 0.00059 41.1 4.0 45 358-407 645-690 (1267)
34 PF02762 Cbl_N3: CBL proto-onc 41.1 47 0.001 28.3 4.2 43 369-411 6-50 (86)
35 COG2258 Uncharacterized protei 35.3 51 0.0011 32.9 4.2 46 447-499 69-117 (210)
36 KOG0197|consensus 30.6 45 0.00097 37.0 3.2 43 365-407 81-125 (468)
37 PF14633 SH2_2: SH2 domain; PD 29.0 64 0.0014 32.3 3.8 46 372-417 44-89 (220)
38 COG4023 SBH1 Preprotein transl 23.8 35 0.00077 27.2 0.7 18 8-25 15-33 (57)
39 cd07927 RHD-n_NFAT_like N-term 23.4 1.5E+02 0.0033 28.4 4.9 70 168-239 83-158 (161)
40 KOG1785|consensus 22.9 1E+02 0.0022 33.8 4.1 55 5-65 277-332 (563)
41 KOG0194|consensus 22.7 61 0.0013 36.0 2.5 31 367-399 51-81 (474)
42 KOG0790|consensus 22.0 86 0.0019 34.8 3.4 54 3-56 128-196 (600)
43 KOG4278|consensus 20.8 1E+02 0.0022 35.9 3.8 54 2-56 168-229 (1157)
44 KOG0194|consensus 20.3 52 0.0011 36.5 1.4 36 6-42 67-108 (474)
No 1
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=100.00 E-value=2.7e-65 Score=504.46 Aligned_cols=211 Identities=52% Similarity=0.927 Sum_probs=183.6
Q ss_pred CCCCccceEEeehhhhhhhhhcccCCCCCcccccccccccceeecCCCceEEEecccchhhhhccCCCCCCcccccceeE
Q psy15307 134 RDTASVKAQIICESQANALLKNEKIGKSDASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKRRPEKRGTESVMDEKFS 213 (499)
Q Consensus 134 ~~~p~Vk~~i~~e~qa~~~~~~~~~~~~~~~g~iln~~~~me~~~~~g~l~a~Fr~~~Lk~~kr~~~~~g~~~Vteek~~ 213 (499)
..++.|.++|++|.||+.+.++.... +++++|+|+++.|+++...+.+++.||||++++++| +++||+++||||||+
T Consensus 42 l~~~~v~~~ii~e~qa~~~~r~~~~~--~~~skiln~~~~~~~~~~~~f~~l~fk~~kl~k~~R-~~~kg~~sVTEEk~~ 118 (254)
T PF02864_consen 42 LKVPVVFDKIISESQARKLFRKFNIL--GTNSKILNNEESMEGHLSAEFLHLTFKNMKLKKIKR-GDRKGSESVTEEKFA 118 (254)
T ss_dssp CEEEEEESCCCCTCCSCCSHTTEEEC--SSSEEEECETTCSCTCEEEEEEEEEEEEE-CSSTT---SGCCTSSGGG-EEE
T ss_pred ccCceEEEeecchHHHHHhhhcCccC--CCchhhcccccccccccccccccceeehhhcccccc-cccccchhHhhhhhe
Confidence 38899999999999999876665543 444499999999999988999999999999999999 899999999999999
Q ss_pred EEEEEEEEeCCceEEEEEeecCCCEEEEECCCcCccchhhhHHhhhcCCCCC--CCCCCCCCCchhhHHHHHHhhccccc
Q psy15307 214 LYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAFAEPGR--SPFVVPDKRPWKMIADVLMMKFESAT 291 (499)
Q Consensus 214 l~F~~~f~~~g~el~~~~~t~SLPvVVI~~~~Q~~~a~atIlW~n~f~~~~r--~~F~~p~~v~W~~l~~~L~~~F~~~t 291 (499)
|+|+++|+++| |+|+|||+|||||||||+||+++|||||+|||||+++.| .+|.+|++|+|+||+++|+|||++++
T Consensus 119 ilF~t~f~~~g--l~~~l~t~SLPvVVIvh~nQ~~~AwAtIlWdN~fs~~~rn~~~F~~p~~v~W~ql~~~L~~~F~~~~ 196 (254)
T PF02864_consen 119 ILFETQFSVGG--LVFDLWTLSLPVVVIVHGNQEPSAWATILWDNAFSSDPRNLNPFVVPPKVPWPQLSEALSWQFSSET 196 (254)
T ss_dssp EEEEEEEEESS--EEEEEEEEESEEEEESSCCCHHHHHHHHHHHHHH--TSS-STGTCS-SEEEHHHHHHHHHHHHHHHS
T ss_pred EEEEEEEEECC--EEEEEEeccCCEEEEecCccchhhhHhhhhhhhcccCCCCccccCCCCcccHHHHHHHHHHHHHHhh
Confidence 99999999998 799999999999999999999999999999999998878 77999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccccccccccccCcCcccccccccccCCCCCCCCchHHhHHHHHHHHhh
Q psy15307 292 GRTLDAENLNFLAEKAFRQATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTRE 357 (499)
Q Consensus 292 ~R~L~~~~l~~L~~kl~~~~~~~~~~~~~~~~~~~Vsw~~F~Ke~lp~~~ftFW~Wf~~il~lik~ 357 (499)
+|||+++||.||++||||.+ . .++++.|||+|||||++||++||||+|||+||+|||+
T Consensus 197 ~R~L~~~~L~~L~~Kl~~~~-----~---~~~~~~isw~~F~Ke~lp~~~ftFW~Wf~~ilelikk 254 (254)
T PF02864_consen 197 GRGLTDEQLQYLAEKLFGQN-----S---SYNNMLISWSQFCKENLPGRNFTFWEWFDGILELIKK 254 (254)
T ss_dssp S----HHHHHHHHHHHHTSS-----S----GCC-EEEHHHHHTSB-TTSSSBHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCc-----c---cCCCceeEHHHhhhccCCCCCCchHHHHHHHHHHhcC
Confidence 99999999999999999872 2 2567899999999999999999999999999999986
No 2
>KOG3667|consensus
Probab=100.00 E-value=1.8e-64 Score=543.45 Aligned_cols=270 Identities=44% Similarity=0.763 Sum_probs=252.1
Q ss_pred CCCCCCccceEEeehhhhhhhhhccc-CCCCCcccccccccccceeecCCCceEEEecccchhhhhccCCCCCCcccccc
Q psy15307 132 HTRDTASVKAQIICESQANALLKNEK-IGKSDASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKRRPEKRGTESVMDE 210 (499)
Q Consensus 132 ~~~~~p~Vk~~i~~e~qa~~~~~~~~-~~~~~~~g~iln~~~~me~~~~~g~l~a~Fr~~~Lk~~kr~~~~~g~~~Vtee 210 (499)
.+..|+.|.+.++++.+++++.+... ....+.+|+|.|++.+|++++.+|+|+|+||||+|||||| ++++|+++||||
T Consensus 340 lv~~p~~~~~~~v~~~~~k~~~~~~~~~~~~~~~~~itn~~~~~~~~~~~~~lsa~Fr~L~lke~kr-~~~~g~~~VteE 418 (682)
T KOG3667|consen 340 LVKNPELNYALKVKEIQDKDLLKPNTLRGSRKFNGEITNNKVMMEEESNNGSLSAEFRNLSLKEIKR-AERKGAESVTEE 418 (682)
T ss_pred eecCCcchhhhHHHHHHhhhhccccccCCCcceeeeeecccccchhhccCCcceeeeccCCHHHHHh-hccCccchhhHH
Confidence 34588899999999999998766443 2335669999999999999999999999999999999998 999999999999
Q ss_pred eeEEEEEEEEEeCCceEEEEEeecCCCEEEEECCCcCccchhhhHHhhhcCCCCCCCCCCCCCCchhhHHHHHHhhcccc
Q psy15307 211 KFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAFAEPGRSPFVVPDKRPWKMIADVLMMKFESA 290 (499)
Q Consensus 211 k~~l~F~~~f~~~g~el~~~~~t~SLPvVVI~~~~Q~~~a~atIlW~n~f~~~~r~~F~~p~~v~W~~l~~~L~~~F~~~ 290 (499)
+|+|+|+++++++| ++++++|+|||||||||+||+++|||||+|||+|++..|.+|.+|++|+|+|++++|+|||++.
T Consensus 419 ~h~i~F~t~~~~~g--l~i~l~T~slpVVvI~~~~q~~~awAtilw~N~~s~~~r~~f~~p~r~~wsQl~evl~~qF~s~ 496 (682)
T KOG3667|consen 419 LHAILFETQFTVGG--LVIRLFTLSLPVVVISNGSQDPNAWATILWYNAFSENPRVFFNVPPRVSWSQLCEVLSWQFSSE 496 (682)
T ss_pred HHhhhheeEEecCC--cceeeeeccceEEEEEecccccchhheeeehhhccccccccccCCCCCCHHHHhHHHhhHHHHh
Confidence 99999999999999 8999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHhccccccccccccCcCcccccccccccCCCCCCCCchHHhHHHHHHHHhhhcccccccceEEe
Q psy15307 291 TGRTLDAENLNFLAEKAFRQATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMG 370 (499)
Q Consensus 291 t~R~L~~~~l~~L~~kl~~~~~~~~~~~~~~~~~~~Vsw~~F~Ke~lp~~~ftFW~Wf~~il~lik~hL~~lW~dg~I~G 370 (499)
++|||+.++|.||++|+++. . ..+++..|+|++||||++|+++|+||+|++++++++|+||..+|+||+|+|
T Consensus 497 v~RgL~~d~l~~L~ekl~~~-----~---~~~~~~~i~w~qf~ke~~~~~~~~FW~w~~~ivgl~k~~l~~Lw~dg~Img 568 (682)
T KOG3667|consen 497 VGRGLTIDQLGFLAQKLFNP-----N---ESYSGSSISWAQFAKEDLPGRNFTFWEWNDKIVGLIKKHLGPLWNDGVIMG 568 (682)
T ss_pred hccccccchhHHHHHHHhcc-----c---cccccchhHHHHhhhhccCcccchHHHHHHHHhhhhhcchHHHhhcceeee
Confidence 99999999999999999985 2 345678999999999999999999999999999999999999999999999
Q ss_pred eechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCcc
Q psy15307 371 FVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKR 412 (499)
Q Consensus 371 Fisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r 412 (499)
|++|+.+.+.|..+++|+||||||+++.|||++.|+.+....
T Consensus 569 finkq~~~~ll~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~ 610 (682)
T KOG3667|consen 569 FINKQQERALLMTKPDGTFLLRFSASEEGGITIAWVEDQKQN 610 (682)
T ss_pred ecchhhhhhhhhcCCCCCceeeeeccccCceeEEeccccccc
Confidence 999999999999999999999999999999999999865443
No 3
>KOG3667|consensus
Probab=99.82 E-value=4e-21 Score=208.70 Aligned_cols=96 Identities=49% Similarity=0.776 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEEeecCCcCcEEEEEecCC--CeeeeecCCCcccccccChHhHhCCCCCccccCCCCChhhhcccCCCCC
Q psy15307 2 LASQVKGTFLLRFSDSELGGITIAWKGDN--TEVFMLQPFTSKDFQIRNLADRISDLPHLVYLYPDKPKDQAFSKYYTPF 79 (499)
Q Consensus 2 L~~~~~gtFllRfSds~~g~it~~~v~~~--~~v~~~~P~t~~~l~~~~l~d~i~~~~~l~~lyp~~pkd~aF~~yy~~~ 79 (499)
|+.+++||||||||||++|||||+||.+. ..+++|+|||+++|++++|+|+|+|.++|.||||++|||+|||+||+..
T Consensus 579 l~~~~~GtflLrfs~S~~GgiT~~~v~~~~~~~~~~i~P~t~~~ls~~~l~d~i~~e~~L~~l~p~~~kd~afg~~y~~~ 658 (682)
T KOG3667|consen 579 LMTKPDGTFLLRFSASEEGGITIAWVEDQKQNLIMMIMPFTKGDLSATSLADIIRDENPLFYLYPDIPKDEAFGKYYSRP 658 (682)
T ss_pred hhcCCCCCceeeeeccccCceeEEecccccccceeEeccccccccccchhhhhccchhhhhhhcCCcchhhhccccccCC
Confidence 67899999999999999999999999854 3479999999999999999999999999999999999999999999832
Q ss_pred CCCCCCCCCCcccceEEEeec
Q psy15307 80 QDSQPMGTNGYVKPVLVTHVP 100 (499)
Q Consensus 80 ~~~~~~~~~gYv~~~l~~~~~ 100 (499)
+ .....+|+++.....++
T Consensus 659 ~---~~~~~~~~~~~~~~y~~ 676 (682)
T KOG3667|consen 659 E---AKEVLEYVPPQIKQYVK 676 (682)
T ss_pred c---cccccccCCcccccccC
Confidence 2 22345677666555554
No 4
>KOG2362|consensus
Probab=99.79 E-value=6e-20 Score=183.99 Aligned_cols=121 Identities=26% Similarity=0.254 Sum_probs=98.2
Q ss_pred cceEEeeechHHHHHHHhhC--ccceeEEeecCCCCCceeeeecCCCCcccccccccccccccccccccCCCCcceEEEe
Q psy15307 365 DGHIMGFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGELVFQLF 442 (499)
Q Consensus 365 dg~I~GFisk~ea~~~L~~~--~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~d~~p~~~n~~~~lli 442 (499)
+..+.|..+.+....++++. .++.|+.-.. ++-.+......+..|+..++..+.+...|+|.+| ||++
T Consensus 142 ~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~---~~~~~er~~~~~~~~~~~p~~~~~d~~~f~D~~P-------fli~ 211 (336)
T KOG2362|consen 142 DLSADGYDCGDWVASAFSEGIEEPNWRLIFVG---KGLYTERTNKPDETWWNNPVPKRGDSTTFSDLAP-------FLIA 211 (336)
T ss_pred cceeeccccHhhhhhhHHhhhhccchhhhhhc---CcceeeecccCCccccCCCccCccccccccccch-------hhhh
Confidence 44777888888888888875 3444443321 1112223333445577777778888999999999 9999
Q ss_pred e--ccc--cCccCCCccCCCCCCCCcceEeeCCCCCCCCCceEEEecCceEEeeeeccCCC
Q psy15307 443 I--SMN--TSRIGEDIEPLLLVPTPRNIVVDGPPPYAEDTWDWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 443 n--Sl~--n~rl~~~v~~~RFRp~r~NiVv~G~~p~~Ed~W~~lrIG~~~~f~~v~~C~RC 499 (499)
| ||+ |+||..+|+|++||| ||+|+||+||+||.|.+|||| +++|+.+++|+||
T Consensus 212 s~aSL~dLNt~L~~~V~~~~FRp---nI~vdgc~~~~ED~W~ei~Ig-d~~~~~v~~CtRC 268 (336)
T KOG2362|consen 212 SQASLDDLNTRLDKPVPMNNFRP---NIVVDGCDAFAEDKWDEIRIG-DAEFQCVAPCTRC 268 (336)
T ss_pred chhhHHHHHhhhcCCccHhhccc---ceEEecCccccccccceEEEc-cEEEEEEeeccce
Confidence 9 999 999999999999999 999999999999999999999 9999999999999
No 5
>COG3217 Uncharacterized Fe-S protein [General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=164.86 Aligned_cols=114 Identities=29% Similarity=0.542 Sum_probs=94.2
Q ss_pred ccccccceEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCcccccccccccccccccccccCCCCcceE
Q psy15307 360 KNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGELVF 439 (499)
Q Consensus 360 ~~lW~dg~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~d~~p~~~n~~~~ 439 (499)
..+|.+ .....+..+++.+||+. ||-| .+++.|.+....+.++.. ......|+|+|| +
T Consensus 88 ~~vw~~-~~~a~~~~~a~~d~lS~-----flg~-------~v~L~~~~~~~~r~v~~~--p~~~~~fadg~p-------~ 145 (270)
T COG3217 88 VEVWGD-HFTADAAGDAANDWLSG-----FLGR-------AVSLRWDGAGFARRVKAG--PAVPVTFADGYP-------I 145 (270)
T ss_pred ceeecc-ccccccchhHHHHHHHh-----hhce-------eeEEEecCccccccccCC--CceeeEecCCce-------E
Confidence 345766 55667899999999993 3333 677777764333444432 234789999999 9
Q ss_pred EEee--ccc--cCccCCCccCCCCCCCCcceEeeCCCCCCCCCceEEEecCceEEeeeeccCCC
Q psy15307 440 QLFI--SMN--TSRIGEDIEPLLLVPTPRNIVVDGPPPYAEDTWDWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 440 llin--Sl~--n~rl~~~v~~~RFRp~r~NiVv~G~~p~~Ed~W~~lrIG~~~~f~~v~~C~RC 499 (499)
|++| ||+ +.|...+++|+|||| |||++|.+||+||.|+.|+|| +|+|.+||||.||
T Consensus 146 l~~~~aSl~dL~~r~~~~~~merFRp---Nlvv~ge~a~aEd~w~~i~IG-~v~F~~vkPC~RC 205 (270)
T COG3217 146 LLFNTASLADLRRRVPANLEMERFRP---NLVVEGEDAFAEDSWKSIRIG-GVRFDVVKPCSRC 205 (270)
T ss_pred EEEccccHHHHhhhccCCCChhhCCC---ceEEeecccccccCceEEEEc-cEEEEEeccchhc
Confidence 9999 999 999999999999999 999999999999999999999 9999999999999
No 6
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.68 E-value=4.8e-17 Score=184.95 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=96.1
Q ss_pred ccccccceEEeeechHHHHHHHhhCc-cceeEEeecCCCCCceeeeecCCCCcccccccccccccccccccccCCCCcce
Q psy15307 360 KNVWTDGHIMGFVRKRKAEEMLASQV-KGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGELV 438 (499)
Q Consensus 360 ~~lW~dg~I~GFisk~ea~~~L~~~~-~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~d~~p~~~n~~~ 438 (499)
..+|.+ .+.|.++++++.+||++.. ..++|+|+.+...+........ . ....+.....+|+|++|
T Consensus 611 v~v~~~-~~~~~~~g~~~~~w~S~~lg~~~~Lv~~~~~~~r~~~~~~~~--~----~~~~~~~~~~~faD~~p------- 676 (805)
T PLN02724 611 VILCGN-RAESMSYGTEINEWFTNALGRRCTLVRKSSSNTRVCRNRNPS--H----SPCGDDESRLSFANEGQ------- 676 (805)
T ss_pred eEEeCC-cceeEecchhHHHHHHHHhCCceEEEEeCCcccccccccccc--c----ccccCcCCceeecCCCc-------
Confidence 357877 5789999999999999873 3589999877654322110000 0 00011223589999999
Q ss_pred EEEee--ccc--cCccC-------CCccCCCCCCCCcceEeeCCCCCCCCCceEEEecCceEEeeeeccCCC
Q psy15307 439 FQLFI--SMN--TSRIG-------EDIEPLLLVPTPRNIVVDGPPPYAEDTWDWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 439 ~llin--Sl~--n~rl~-------~~v~~~RFRp~r~NiVv~G~~p~~Ed~W~~lrIG~~~~f~~v~~C~RC 499 (499)
|||+| ||+ |+++. .+++++|||| ||||+|++||+||.|++|+|| +++|++++||+||
T Consensus 677 ~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRp---NiVv~g~~~f~ED~W~~l~IG-~~~~~~~~~C~RC 744 (805)
T PLN02724 677 FLLISEASVEDLNRRLATGQEDAKIRLDPTRFRP---NLVVSGGEAYAEDEWQSLSIG-DAEFTVLGGCNRC 744 (805)
T ss_pred eEEecHHHHHHHHHHhccccccccCCCcHHHccc---eEEECCCCCccccCceEEEEC-CEEEEEecccCCC
Confidence 99999 999 89886 3799999999 999999999999999999999 9999999999999
No 7
>PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form. Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C.
Probab=99.38 E-value=3.4e-13 Score=121.00 Aligned_cols=66 Identities=36% Similarity=0.702 Sum_probs=50.4
Q ss_pred cccccccccCCCCcceEEEee--ccc--cCccCCCc-cCCCCCCCCcceEeeCCCCCCCCCc--eEEEecCceEEeeeec
Q psy15307 423 SLYFSSTFSIGGGELVFQLFI--SMN--TSRIGEDI-EPLLLVPTPRNIVVDGPPPYAEDTW--DWVRFNSDVITRQVKP 495 (499)
Q Consensus 423 ~~~F~d~~p~~~n~~~~llin--Sl~--n~rl~~~v-~~~RFRp~r~NiVv~G~~p~~Ed~W--~~lrIG~~~~f~~v~~ 495 (499)
...|.|.+| ++++| |++ ++++..+. ++.|||| ||+|+|.+||+||.| +.++|| ++.|+++++
T Consensus 12 ~~~~~d~~~-------v~l~s~~s~~~l~~~~~~~~~~~~rFR~---Nivv~g~~~f~Ed~w~~~~l~iG-~~~l~v~~~ 80 (133)
T PF03473_consen 12 KHHFGDERP-------VSLISQESLDALNARLGEPGLDPRRFRP---NIVVDGLPPFDEDDWCGDRLRIG-DAVLEVTQP 80 (133)
T ss_dssp ----GCGGS-------EEEEECHHHHHHHHHCCCCGGSCCCCT----SEEECS-T---TCCGBTEEEECT-TEEEEEEEE
T ss_pred cccCCCCCc-------eeeccHHHHHHHHhhhccccCCHhHCCC---CEEEeccccccccccceeeeccC-CEEEEEEeC
Confidence 578889999 99999 999 99998765 9999999 999999999999999 999999 999999999
Q ss_pred cCCC
Q psy15307 496 CTLL 499 (499)
Q Consensus 496 C~RC 499 (499)
|.||
T Consensus 81 ~~rC 84 (133)
T PF03473_consen 81 CPRC 84 (133)
T ss_dssp ----
T ss_pred cCCC
Confidence 9999
No 8
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=97.51 E-value=9.3e-05 Score=60.13 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=38.7
Q ss_pred eEEeeechHHHHHHHhh-CccceeEEeecCCCCCceeeeecCCC
Q psy15307 367 HIMGFVRKRKAEEMLAS-QVKGTFLLRFSDSELGGITIAWKGGP 409 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~-~~~GtfLlRFSds~~g~iti~~v~~~ 409 (499)
|..|+|++++|+++|.+ .+.|+||||.|++..+.+.+++..++
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~ 44 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSKPGKYVLSVRFDG 44 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSSTTSEEEEEEETT
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEecccccccccccccccc
Confidence 35789999999999999 99999999999999999999998644
No 9
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=97.40 E-value=0.00023 Score=58.68 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=41.6
Q ss_pred ceEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCccccccc
Q psy15307 366 GHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSV 417 (499)
Q Consensus 366 g~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~V 417 (499)
.|..|.+++++|+++|.+.++|+||||+|++..+.+.++++.. +...+..+
T Consensus 2 ~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~-~~~~h~~I 52 (84)
T smart00252 2 PWYHGFISREEAEKLLKNEGDGDFLVRDSESEPGDYVLSVRVK-GKVKHYRI 52 (84)
T ss_pred CeecccCCHHHHHHHHhcCCCcEEEEEcCCCCCCCEEEEEEEC-CEEEEEEE
Confidence 3677999999999999999999999999999889888888854 23334444
No 10
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=97.19 E-value=0.00044 Score=57.69 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=38.6
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCC
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGP 409 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~ 409 (499)
|..|.+++++|+++|.+.++|+||||.|++..+.+.+++..++
T Consensus 2 w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~ 44 (94)
T cd00173 2 WYHGPISREEAEELLKKKPDGTFLVRDSESSPGDYVLSVRVKG 44 (94)
T ss_pred ccccCCCHHHHHHHHhcCCCceEEEEecCCCCCCEEEEEEECC
Confidence 5678999999999999999999999999998898888888643
No 11
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=97.18 E-value=9.8e-05 Score=60.01 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=28.2
Q ss_pred CCCC-CCCCeEEEEeecCCcCcEEEEEecCCCeeee
Q psy15307 1 MLAS-QVKGTFLLRFSDSELGGITIAWKGDNTEVFM 35 (499)
Q Consensus 1 ~L~~-~~~gtFllRfSds~~g~it~~~v~~~~~v~~ 35 (499)
+|++ +++||||||+|++..|.++++++.++ +|.|
T Consensus 14 ~L~~~~~~G~FLvR~s~~~~~~~~Lsv~~~~-~v~h 48 (77)
T PF00017_consen 14 LLMQGKPDGTFLVRPSSSKPGKYVLSVRFDG-KVKH 48 (77)
T ss_dssp HHHTTSSTTEEEEEEESSSTTSEEEEEEETT-EEEE
T ss_pred HHHhcCCCCeEEEEecccccccccccccccc-ccEE
Confidence 3566 89999999999999999999999765 4433
No 12
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=96.83 E-value=0.00052 Score=57.25 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCCCCCCeEEEEeecCCcCcEEEEEecCCCeeeeecC
Q psy15307 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQP 38 (499)
Q Consensus 1 ~L~~~~~gtFllRfSds~~g~it~~~v~~~~~v~~~~P 38 (499)
+|++.++|+||||.|++..|.++++++.++ +|.|..-
T Consensus 15 ~L~~~~~G~FLiR~s~~~~~~~~Lsv~~~~-~v~H~~I 51 (94)
T cd00173 15 LLKKKPDGTFLVRDSESSPGDYVLSVRVKG-KVKHYRI 51 (94)
T ss_pred HHhcCCCceEEEEecCCCCCCEEEEEEECC-EEEEEEE
Confidence 467789999999999999999999998755 6665543
No 13
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=96.76 E-value=0.0016 Score=53.60 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=27.8
Q ss_pred CCCCCCCCeEEEEeecCCcCcEEEEEecCCCeeee
Q psy15307 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFM 35 (499)
Q Consensus 1 ~L~~~~~gtFllRfSds~~g~it~~~v~~~~~v~~ 35 (499)
||.+.++||||||+|++..|.++++++.+ .+|.|
T Consensus 16 lL~~~~~G~FLvR~s~~~~~~~~Lsv~~~-~~~~h 49 (84)
T smart00252 16 LLKNEGDGDFLVRDSESEPGDYVLSVRVK-GKVKH 49 (84)
T ss_pred HHhcCCCcEEEEEcCCCCCCCEEEEEEEC-CEEEE
Confidence 57788899999999999889999999865 33443
No 14
>KOG3601|consensus
Probab=92.40 E-value=0.085 Score=51.98 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=63.6
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCccccccccccccccccc--ccccCCCCcce-EEEee
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFS--STFSIGGGELV-FQLFI 443 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~--d~~p~~~n~~~-~llin 443 (499)
+..|.|+++.|+++|+++..|.||+|-+++..|..+++...++ +.++..+.++..+.+|. ..++ ++|+++ |.-.+
T Consensus 60 wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d-~vqhfkvvrpa~~k~~lw~skfn-slnplv~Y~rt~ 137 (222)
T KOG3601|consen 60 WVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPD-GVQHFKVVRPAFGKYFLWSSKFN-SLNPLVSYHRTA 137 (222)
T ss_pred ceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCC-CceeccccccCccccccchhhcc-CCCCCcccCccc
Confidence 5678899999999999999999999999999999888887655 34556666666788887 5667 888888 88877
Q ss_pred ccc
Q psy15307 444 SMN 446 (499)
Q Consensus 444 Sl~ 446 (499)
|+.
T Consensus 138 s~~ 140 (222)
T KOG3601|consen 138 SQS 140 (222)
T ss_pred ccc
Confidence 555
No 15
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=91.93 E-value=0.22 Score=51.85 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=46.2
Q ss_pred CCcceEEEee--ccc-cCccCCC-ccCCCCCCCCcceEeeCCCCCCCCCceEEEecCc-eEEeeeeccCCC
Q psy15307 434 GGELVFQLFI--SMN-TSRIGED-IEPLLLVPTPRNIVVDGPPPYAEDTWDWVRFNSD-VITRQVKPCTLL 499 (499)
Q Consensus 434 ~n~~~~llin--Sl~-n~rl~~~-v~~~RFRp~r~NiVv~G~~p~~Ed~W~~lrIG~~-~~f~~v~~C~RC 499 (499)
+.+.++++++ +++ -..++.+ +++-.||. ||+++|....+-.-=+.++|| + +.|++..+|..|
T Consensus 200 g~~RqVsl~~~E~~~~~~~~g~~~l~pG~fGE---NLtv~Gidl~~l~iGdrlrIG-~~avLeVt~pr~PC 266 (308)
T PRK14499 200 TWHRQVSLLDISSIKKMEEYGLKGLCFGKFAE---NITTENLDLQKISLGTKLKIG-DNVVLEISQIGKKC 266 (308)
T ss_pred CcCceEEEcCHHHHHHHHhcCCcCCCcccccc---eEEEcCcCHHHCCCCCEEEEC-CcEEEEEEeCCCCC
Confidence 3457788888 776 2245545 88999988 999999844222212899999 7 999999988887
No 16
>KOG4637|consensus
Probab=90.79 E-value=0.094 Score=55.43 Aligned_cols=76 Identities=24% Similarity=0.350 Sum_probs=52.4
Q ss_pred eeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCcccccccccccccccccc--cccCCCCcceEEEee----
Q psy15307 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSS--TFSIGGGELVFQLFI---- 443 (499)
Q Consensus 370 GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~d--~~p~~~n~~~~llin---- 443 (499)
|=|+++|+...|.++|.|+||||=..+..|..+++........-+.-+.. +....|.| .|. .+|-|||
T Consensus 28 gdisReev~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~-DgKyGF~d~ltf~-----SVVelIn~yr~ 101 (464)
T KOG4637|consen 28 GDISREEVNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHR-DGKYGFSDPLTFN-----SVVELINHYRN 101 (464)
T ss_pred cccCHHHHHHHhcCCCCCcEEeeccccCCCceEEEEecCCccceeeeEEe-cCccCCCCchhhH-----HHHHHHHHHhh
Confidence 44999999999999999999999888889999999874322222222212 22455653 344 4455666
Q ss_pred -ccc--cCccC
Q psy15307 444 -SMN--TSRIG 451 (499)
Q Consensus 444 -Sl~--n~rl~ 451 (499)
||+ |..|.
T Consensus 102 ~SL~~yN~~LD 112 (464)
T KOG4637|consen 102 ESLAQYNPKLD 112 (464)
T ss_pred hHHHhhCcccc
Confidence 887 77765
No 17
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=88.95 E-value=0.2 Score=50.78 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=48.7
Q ss_pred CCCccceEEeehhhhhhhhhcccCCCCCcccccc-ccccccee-ecCCCceEEEecccchhhhhccCCCCCCcccc
Q psy15307 135 DTASVKAQIICESQANALLKNEKIGKSDASGEIL-NNMGVMEY-NTHSKVLSISLRNMQLKKIKRRPEKRGTESVM 208 (499)
Q Consensus 135 ~~p~Vk~~i~~e~qa~~~~~~~~~~~~~~~g~il-n~~~~me~-~~~~g~l~a~Fr~~~Lk~~kr~~~~~g~~~Vt 208 (499)
...++++.+++........++.+.+ .|+ +++++|++ ++.+++++++|+|+++|++|.+..++|....+
T Consensus 40 ~~l~~~~v~~~ii~e~qa~~~~r~~------~~~~~~skiln~~~~~~~~~~~~f~~l~fk~~kl~k~~R~~~kg~ 109 (254)
T PF02864_consen 40 YHLKVPVVFDKIISESQARKLFRKF------NILGTNSKILNNEESMEGHLSAEFLHLTFKNMKLKKIKRGDRKGS 109 (254)
T ss_dssp TTCEEEEEESCCCCTCCSCCSHTTE------EECSSSEEEECETTCSCTCEEEEEEEEEEEEE-CSSTT--SGCCT
T ss_pred ccccCceEEEeecchHHHHHhhhcC------ccCCCchhhcccccccccccccccccceeehhhcccccccccccc
Confidence 6777888888776666555555555 677 56699998 56799999999999999999755666544333
No 18
>KOG1785|consensus
Probab=88.12 E-value=2 Score=46.15 Aligned_cols=133 Identities=21% Similarity=0.292 Sum_probs=95.6
Q ss_pred CCcCccchhhhHHhhhcCCCCCCCCCCCCCCchhhHHHHHHhhcccccCCCCChhhHHHHHHHHhccccccccccccCcC
Q psy15307 244 GNQEPNAHATITWDNAFAEPGRSPFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQATDIKMAECADYS 323 (499)
Q Consensus 244 ~~Q~~~a~atIlW~n~f~~~~r~~F~~p~~v~W~~l~~~L~~~F~~~t~R~L~~~~l~~L~~kl~~~~~~~~~~~~~~~~ 323 (499)
.-|...|.|.-+|...|.+. .-|||..|..+|........+ |+-++-|.--. ..|
T Consensus 169 ~friTKadA~~FWr~~fg~k--------~ivPW~~F~q~L~~~Hpi~~g-------leAmaLktTID----Ltc------ 223 (563)
T KOG1785|consen 169 RFRITKADAAEFWRKHFGKK--------TIVPWKTFRQALHKVHPISSG-------LEAMALKTTID----LTC------ 223 (563)
T ss_pred eeeeccccHHHHHHHhcCCc--------ccccHHHHHHHHHhcCCCcch-------hHHHHhhceec----ccc------
Confidence 34567899999999999864 678999999999866554333 33344443221 223
Q ss_pred cccccccccccCCCCCCCCchHHhHHHHHHHHhhh-cccccccceEEeeechHHHHHHHhhC--ccceeEEeecCCCCCc
Q psy15307 324 NMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREH-LKNVWTDGHIMGFVRKRKAEEMLASQ--VKGTFLLRFSDSELGG 400 (499)
Q Consensus 324 ~~~Vsw~~F~Ke~lp~~~ftFW~Wf~~il~lik~h-L~~lW~dg~I~GFisk~ea~~~L~~~--~~GtfLlRFSds~~g~ 400 (499)
+.+||--.|. -|=.-|.+--.|+|+. +..+--.|+ +.|+.-+|.++.|.+. .||.++.|.|=+..|.
T Consensus 224 nd~iS~FEFD---------vFTRLFqPw~tllkNWq~LavtHPGY-mAFLTYDEVk~RLqk~~~KpGSYIFRlSCTRlGQ 293 (563)
T KOG1785|consen 224 NDFISNFEFD---------VFTRLFQPWKTLLKNWQTLAVTHPGY-MAFLTYDEVKARLQKYIKKPGSYIFRLSCTRLGQ 293 (563)
T ss_pred ccceeeehhh---------hHHHhhccHHHHHHhhhhhhccCCce-eEEeeHHHHHHHHHHHhcCCCceEEeeccCcccc
Confidence 3478877775 5666677777777751 111112344 7899999999999976 7999999999999999
Q ss_pred eeeeecCCCCc
Q psy15307 401 ITIAWKGGPEK 411 (499)
Q Consensus 401 iti~~v~~~~~ 411 (499)
-.|.||..|+.
T Consensus 294 WAIGYVt~dG~ 304 (563)
T KOG1785|consen 294 WAIGYVTADGN 304 (563)
T ss_pred eeEEEEcCCCc
Confidence 99999987654
No 19
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=84.44 E-value=0.4 Score=41.02 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=54.4
Q ss_pred cCccchhhhHHhhhcCCCCCCCCCCCCCCchhhHHHHHHhhcccccCCCCChhhHHHHHHHHhccccccccccccCcCcc
Q psy15307 246 QEPNAHATITWDNAFAEPGRSPFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQATDIKMAECADYSNM 325 (499)
Q Consensus 246 Q~~~a~atIlW~n~f~~~~r~~F~~p~~v~W~~l~~~L~~~F~~~t~R~L~~~~l~~L~~kl~~~~~~~~~~~~~~~~~~ 325 (499)
+...+.|..+|...|..- .-|||+.+-.+|+..+....+ +.+..|++.-+.. | +.
T Consensus 3 rITK~eA~~FW~~~Fg~r--------~IVPW~~F~~~L~~~h~~~~~--~~~~aLk~TiDlT---------~------n~ 57 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGKR--------TIVPWSEFRQALQKVHPISSG--LEAMALKSTIDLT---------C------ND 57 (85)
T ss_dssp --SSHHHHHHHHHHHTT---------SEEEHHHHHHHHHHHS--SSH--HHHHHHHHHH-TT---------S------SS
T ss_pred eeccHHHHHHHHHHCCCC--------eEeeHHHHHHHHHHhcCCCch--HHHHHHHHHHhcc---------c------CC
Confidence 456789999999999752 458999999999988876544 4455555544432 2 35
Q ss_pred cccccccccCCCCCCCCchHHhHHHHHHHHhh
Q psy15307 326 LLNWSQFCKEPLPDRSFTFWDWFYAVMKLTRE 357 (499)
Q Consensus 326 ~Vsw~~F~Ke~lp~~~ftFW~Wf~~il~lik~ 357 (499)
+||+-+|. .|=.||++--.|+|.
T Consensus 58 ~iS~FeFd---------vFtRlFqPw~~ll~N 80 (85)
T PF02761_consen 58 YISNFEFD---------VFTRLFQPWSTLLRN 80 (85)
T ss_dssp EEEHHHHH---------HHHHHT--GGGHHHH
T ss_pred ccchhhhH---------HHHHHHhhHHHHHHH
Confidence 89999997 899999998888875
No 20
>KOG2142|consensus
Probab=80.88 E-value=0.64 Score=52.48 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCCCCCCCcceEeeCCCCCCCCCceEEEecCceEEeeeeccCCC
Q psy15307 456 PLLLVPTPRNIVVDGPPPYAEDTWDWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 456 ~~RFRp~r~NiVv~G~~p~~Ed~W~~lrIG~~~~f~~v~~C~RC 499 (499)
..|||. ||+|.+..+++|-+|+.+-|| .++|.+ ||.||
T Consensus 624 ~~~fr~---p~IV~~lae~E~isl~~~~l~-~iri~d--p~~r~ 661 (728)
T KOG2142|consen 624 SKRFRA---PIIVNKLAEREEISLGELSLG-HIRIQD--PCHRD 661 (728)
T ss_pred hccccc---hhhhcchhhhhcccccceeee-eeEEec--Ccchh
Confidence 478988 999999999999999999999 888887 89998
No 21
>KOG1930|consensus
Probab=79.80 E-value=1.8 Score=46.80 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=30.5
Q ss_pred echHHHHHHHhhCccceeEEeecCCCCCceeeeec
Q psy15307 372 VRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWK 406 (499)
Q Consensus 372 isk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v 406 (499)
|++|+|=++|.+++||+|+||=|.+..|++-++.+
T Consensus 219 isREQAIalLrdkePGtFvvRDS~SfrGayGLAlK 253 (483)
T KOG1930|consen 219 ISREQAIALLRDKEPGTFVVRDSHSFRGAYGLALK 253 (483)
T ss_pred CCHHHHHHHhhcCCCCeEEEecCCcCCCccceEEE
Confidence 89999999999999999999988887776655554
No 22
>KOG4792|consensus
Probab=72.82 E-value=4.9 Score=40.45 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=36.3
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecC
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKG 407 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~ 407 (499)
|-+|-+|++||..+|.++..|+||+|=|.+..|...++.-.
T Consensus 13 wYfg~mSRqeA~~lL~~~r~G~FLvRDSst~pGdYvLsV~E 53 (293)
T KOG4792|consen 13 WYFGPMSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSE 53 (293)
T ss_pred eecCcccHHHHHHHhcCcceeeEEEecCCCCCCceEEEEec
Confidence 66788999999999999999999999888888988777654
No 23
>KOG4637|consensus
Probab=69.89 E-value=0.91 Score=48.28 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=38.9
Q ss_pred EeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCC--CCccccccccccccccccccccc
Q psy15307 369 MGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGG--PEKRGTVSVMDEKFSLYFSSTFS 431 (499)
Q Consensus 369 ~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~--~~~r~V~~Vl~~~~~~~F~d~~p 431 (499)
++-+.++.|+++|..++.|+||+|= .+..|...|+.+.+ -..+.++.- ..|..|+.-|.
T Consensus 336 ~~~a~r~kAe~llrg~~dGtFLIR~-ss~~g~yalSV~~~~~V~HClIy~t---atG~GFa~pyn 396 (464)
T KOG4637|consen 336 VRDANRDKAEELLRGKPDGTFLIRE-SSKGGCYALSVVHDGEVKHCLIYQT---ATGFGFAEPYN 396 (464)
T ss_pred HhhhhHHHHHHHhcCCCCCeEEEee-ccCCCceEEEEEECCceeeeEEeec---cccccccchhH
Confidence 3457899999999999999999996 44666666666642 122333321 23677775544
No 24
>KOG4278|consensus
Probab=66.40 E-value=5.4 Score=45.66 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=45.0
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCccccccccccccccccc
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFS 427 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~Vl~~~~~~~F~ 427 (499)
|-.|-||+..|+.+|+.-..|.||+|-|++..|..+|+..-+ +++.|+.+..+.++..|.
T Consensus 154 WYHGpvSRsaaEy~LsSgInGSFLVRESEsSpgQ~sISlRye-GRVyHYRINt~~dgK~yv 213 (1157)
T KOG4278|consen 154 WYHGPVSRSAAEYILSSGINGSFLVRESESSPGQYSISLRYE-GRVYHYRINTDNDGKMYV 213 (1157)
T ss_pred cccCccccchhhhhhhcCcccceEEeeccCCCcceeEEEEec-ceEEEEEeeccCCccEEE
Confidence 445779999999999999999999999999999888876643 344555554444444443
No 25
>KOG1930|consensus
Probab=57.74 E-value=6.3 Score=42.76 Aligned_cols=42 Identities=31% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCCCCCCCeEEEEeecCCcCcEEEEEecCCCeeeeecCCCccc
Q psy15307 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKD 43 (499)
Q Consensus 1 ~L~~~~~gtFllRfSds~~g~it~~~v~~~~~v~~~~P~t~~~ 43 (499)
||++|+||||++|=|-|--|++-.|-.-.. -.-.++|+.+++
T Consensus 227 lLrdkePGtFvvRDS~SfrGayGLAlKVst-PPPs~~~~~g~~ 268 (483)
T KOG1930|consen 227 LLRDKEPGTFVVRDSHSFRGAYGLALKVST-PPPSVQPGDGSD 268 (483)
T ss_pred HhhcCCCCeEEEecCCcCCCccceEEEecc-CCCcccCCCCCc
Confidence 799999999999998888899888874111 123567888776
No 26
>KOG1264|consensus
Probab=54.59 E-value=11 Score=44.11 Aligned_cols=49 Identities=31% Similarity=0.572 Sum_probs=42.0
Q ss_pred hhcccccccceEEeeechHHHHHHHhhC------ccceeEEeecCCCCCceeeeecCC
Q psy15307 357 EHLKNVWTDGHIMGFVRKRKAEEMLASQ------VKGTFLLRFSDSELGGITIAWKGG 408 (499)
Q Consensus 357 ~hL~~lW~dg~I~GFisk~ea~~~L~~~------~~GtfLlRFSds~~g~iti~~v~~ 408 (499)
-|.-.-|..|.+.| +.+|+.+|... +.|+||+|=|++..|..++++-.+
T Consensus 530 lH~~E~WFHgkle~---R~eAekll~eycke~G~~dGtFlVReS~tFvgDytLSfwr~ 584 (1267)
T KOG1264|consen 530 LHFGEKWFHGKLEG---RTEAEKLLQEYCKETGGKDGTFLVRESETFVGDYTLSFWRS 584 (1267)
T ss_pred hccchhhhhccccc---chHHHHHHHHHHHHhCCCCccEEEeeccccccceeeeeeEC
Confidence 47777788888888 89999999865 479999999999999999999753
No 27
>KOG4226|consensus
Probab=54.02 E-value=19 Score=37.34 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=36.8
Q ss_pred eEEeeechHHHHHHHhhC-ccceeEEeecCCCCCceeeeecCC
Q psy15307 367 HIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITIAWKGG 408 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~-~~GtfLlRFSds~~g~iti~~v~~ 408 (499)
|-+|-|++++|+..|... -.|.||+|=|++..|.++++..+.
T Consensus 283 WYyG~itR~qae~~Ln~hG~eGdFLiRDSEsnpgD~SvSlka~ 325 (379)
T KOG4226|consen 283 WYYGNITRHQAECALNEHGHEGDFLIRDSESNPGDFSVSLKAS 325 (379)
T ss_pred ceeccccHHHHHHHHhccCccCceEEecCCCCCcceeEEeecc
Confidence 567889999999999544 679999999999999999999874
No 28
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=52.88 E-value=37 Score=28.94 Aligned_cols=56 Identities=25% Similarity=0.483 Sum_probs=36.5
Q ss_pred CCCCeEEEEeecCCcCcEEEEEecCCCeeeeecCCCcccccccChHhHhCCC-CCccccCCCC
Q psy15307 5 QVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLADRISDL-PHLVYLYPDK 66 (499)
Q Consensus 5 ~~~gtFllRfSds~~g~it~~~v~~~~~v~~~~P~t~~~l~~~~l~d~i~~~-~~l~~lyp~~ 66 (499)
..||++..|-|=+.+|--.|.||..+.+|.--=|-. .||...+.|= ..=-|||||=
T Consensus 23 ~kpGsYiFRlSCTrLGQWAIGyV~~dg~I~QTIPqn------k~L~qaLidG~reG~ylyP~G 79 (86)
T PF02762_consen 23 DKPGSYIFRLSCTRLGQWAIGYVTQDGKILQTIPQN------KSLYQALIDGSREGFYLYPDG 79 (86)
T ss_dssp TSTTEEEEEEESSSTTSEEEEEEETTSEEEEE--SS------S-HHHHHHHHHHTTSS-EETT
T ss_pred CCcccEEEeeccccccceeEEEEcCCCcEEEecCCC------chHHHHHHhccccceEECCCC
Confidence 357999999999999999999998666654433543 4555544431 2335788863
No 29
>KOG0790|consensus
Probab=51.75 E-value=15 Score=40.45 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=34.5
Q ss_pred EeeechHHHHHHHhhC-ccceeEEeecCCCCCceeeeecCCC
Q psy15307 369 MGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITIAWKGGP 409 (499)
Q Consensus 369 ~GFisk~ea~~~L~~~-~~GtfLlRFSds~~g~iti~~v~~~ 409 (499)
.|-+++.+|+.+|..+ .+|+||+|-|.+.+|.+.++-..++
T Consensus 114 HG~LsgkeAekLl~ekgk~gsfLvReSqs~PGdfVlSvrTdd 155 (600)
T KOG0790|consen 114 HGHLSGKEAEKLLQEKGKHGSFLVRESQSHPGDFVLSVRTDD 155 (600)
T ss_pred ccCCCchhHHHHHHhcCCCccEEEeccccCCCceEEEEEcCC
Confidence 3558889999999554 7999999999999999999987644
No 30
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=49.88 E-value=18 Score=36.23 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=39.0
Q ss_pred cceEEEee--ccc--cCccCC---CccCCCCCCCCcceEeeCCCCCCCCCc---eEEEecCceEEeeeeccCCC
Q psy15307 436 ELVFQLFI--SMN--TSRIGE---DIEPLLLVPTPRNIVVDGPPPYAEDTW---DWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 436 ~~~~llin--Sl~--n~rl~~---~v~~~RFRp~r~NiVv~G~~p~~Ed~W---~~lrIG~~~~f~~v~~C~RC 499 (499)
+.++++.+ +.+ +.++.. .+.+--| -.||.++|. +|++. +.+||| ++.++|..|+.-|
T Consensus 54 dkAV~~y~~e~y~~w~~~~~~~~~~l~~G~f---GENLtv~Gl---~e~~v~IGD~~riG-~avleVsqpR~PC 120 (223)
T PRK11536 54 DRALCHYPREHYLYWAREFPEQAELFVAPAF---GENLSTDGL---TESNVFIGDIFRWG-EALIQVTQPRSPC 120 (223)
T ss_pred cceEEEcCHhHHHHHHHHccccccccCCCCc---cCCEEecCc---ChhhCCccCEEEEC-CEEEEEecCCCCC
Confidence 34466655 444 444432 2334445 449999996 56666 899999 9999999988877
No 31
>KOG2996|consensus
Probab=49.42 E-value=14 Score=41.78 Aligned_cols=41 Identities=27% Similarity=0.510 Sum_probs=32.6
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCC--ceeeeecC
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELG--GITIAWKG 407 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g--~iti~~v~ 407 (499)
|-+|-..+.+|+..|.+.+.||||+|++..+.+ ++++.|..
T Consensus 687 WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynn 729 (865)
T KOG2996|consen 687 WYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNN 729 (865)
T ss_pred hhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEecc
Confidence 345667889999999999999999999976555 56666654
No 32
>KOG2996|consensus
Probab=48.48 E-value=18 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEEee--cCCcCcEEEEEec
Q psy15307 2 LASQVKGTFLLRFS--DSELGGITIAWKG 28 (499)
Q Consensus 2 L~~~~~gtFllRfS--ds~~g~it~~~v~ 28 (499)
|++.++||||+|.+ |+..=||+|.|.+
T Consensus 701 Lk~~~ngT~LVR~r~kea~e~AISikynn 729 (865)
T KOG2996|consen 701 LKNRPNGTYLVRYRTKEAKEFAISIKYNN 729 (865)
T ss_pred hhcCCCceEEEEecccchhheeEEEEecc
Confidence 78999999999998 5667899999974
No 33
>KOG1264|consensus
Probab=42.40 E-value=27 Score=41.08 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=35.4
Q ss_pred hcccccccceEEeeechHHHHHHHhhCcc-ceeEEeecCCCCCceeeeecC
Q psy15307 358 HLKNVWTDGHIMGFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKG 407 (499)
Q Consensus 358 hL~~lW~dg~I~GFisk~ea~~~L~~~~~-GtfLlRFSds~~g~iti~~v~ 407 (499)
|...-|.. .-..|++|+++|+..|. |.||+| +-.......|++..
T Consensus 645 He~k~W~~----as~treqAE~mL~rvp~DGaFLiR-~~~~~nsy~iSfr~ 690 (1267)
T KOG1264|consen 645 HESKPWYH----ASLTREQAEDMLMRVPRDGAFLIR-KREGSNSYAISFRA 690 (1267)
T ss_pred ccCCcccc----ccccHHHHHHHHhhCccCcceEEE-eccCCceEEEEEEE
Confidence 44455543 44789999999999876 999999 77777788888875
No 34
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=41.07 E-value=47 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=36.2
Q ss_pred EeeechHHHHHHHhhC--ccceeEEeecCCCCCceeeeecCCCCc
Q psy15307 369 MGFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITIAWKGGPEK 411 (499)
Q Consensus 369 ~GFisk~ea~~~L~~~--~~GtfLlRFSds~~g~iti~~v~~~~~ 411 (499)
+.|+.=+|+++.|... .||.+..|.|-+..|.-.|.||..++.
T Consensus 6 ~AFlTYdevk~~L~~~~~kpGsYiFRlSCTrLGQWAIGyV~~dg~ 50 (86)
T PF02762_consen 6 MAFLTYDEVKARLQHYRDKPGSYIFRLSCTRLGQWAIGYVTQDGK 50 (86)
T ss_dssp ETT--HHHHHHHHGGGTTSTTEEEEEEESSSTTSEEEEEEETTSE
T ss_pred eEEEeHHHHHHHHHHHhCCcccEEEeeccccccceeEEEEcCCCc
Confidence 6789999999999875 689999999999999999999976643
No 35
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.31 E-value=51 Score=32.86 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=37.1
Q ss_pred cCccCCCccCCCCCCCCcceEeeCCCCCCCCCc---eEEEecCceEEeeeeccCCC
Q psy15307 447 TSRIGEDIEPLLLVPTPRNIVVDGPPPYAEDTW---DWVRFNSDVITRQVKPCTLL 499 (499)
Q Consensus 447 n~rl~~~v~~~RFRp~r~NiVv~G~~p~~Ed~W---~~lrIG~~~~f~~v~~C~RC 499 (499)
.+.++..+.+--|+= ||.++|. +|... +.++|| ++.++|..+|.=|
T Consensus 69 ~~~lg~~l~pg~fGE---Nltt~Gl---~e~~l~iGdr~riG-~allEVSqpR~PC 117 (210)
T COG2258 69 ETLLGRGLQPGAFGE---NLTTSGL---DEANLCIGDRFRIG-EALLEVTQPRKPC 117 (210)
T ss_pred HHHhCCCCCcccccC---ceeecCc---chhhccccCEEEec-cEEEEecCCCCch
Confidence 666777788888977 9999997 34445 799999 9999998877665
No 36
>KOG0197|consensus
Probab=30.62 E-value=45 Score=37.01 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=34.5
Q ss_pred cceEEeeechHHHHHHHhhCc--cceeEEeecCCCCCceeeeecC
Q psy15307 365 DGHIMGFVRKRKAEEMLASQV--KGTFLLRFSDSELGGITIAWKG 407 (499)
Q Consensus 365 dg~I~GFisk~ea~~~L~~~~--~GtfLlRFSds~~g~iti~~v~ 407 (499)
.+|..|-|++++|++.|...+ .|+||+|=|++..+.++++.-.
T Consensus 81 ~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~~~g~yslsv~~ 125 (468)
T KOG0197|consen 81 EPWFFGKISREEAERQLLAPENKEGAFLVRESESDKGDYSLSVRE 125 (468)
T ss_pred CCchhccccHHHHHHhhcCCCCCccceeeecccCCcCCeeEEEEe
Confidence 456778899999997666554 5999999999999988877653
No 37
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=29.03 E-value=64 Score=32.29 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=32.6
Q ss_pred echHHHHHHHhhCccceeEEeecCCCCCceeeeecCCCCccccccc
Q psy15307 372 VRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSV 417 (499)
Q Consensus 372 isk~ea~~~L~~~~~GtfLlRFSds~~g~iti~~v~~~~~r~V~~V 417 (499)
++-.+|+++|.+++.|..+||=|......++++|+-.++--+|..+
T Consensus 44 ~~~~qAe~~L~~~~~Ge~iIRPSSkG~dhL~vTwKv~d~vyqHidV 89 (220)
T PF14633_consen 44 FNYKQAEEYLADQDVGEVIIRPSSKGPDHLTVTWKVADGVYQHIDV 89 (220)
T ss_dssp S-HHHHHHHHCCS-TT-EEEEE-TTTTTEEEEEEEEETTEEEEEEE
T ss_pred CCHHHHHHHHhcCCCCCEEEeeCCCCCCeEEEEEEEcCCcEEEEEE
Confidence 7889999999999999999997666667899999854443334334
No 38
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=23.79 E-value=35 Score=27.21 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=13.4
Q ss_pred CeEEEEeecCC-cCcEEEE
Q psy15307 8 GTFLLRFSDSE-LGGITIA 25 (499)
Q Consensus 8 gtFllRfSds~-~g~it~~ 25 (499)
+.=||||+|++ +++|.|.
T Consensus 15 ~AGLi~f~eEee~~~ikid 33 (57)
T COG4023 15 AAGLIRFFEEEEIKGIKID 33 (57)
T ss_pred ccceeeeecccccCCcccC
Confidence 44589999995 5668764
No 39
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development. This group al
Probab=23.42 E-value=1.5e+02 Score=28.42 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=46.4
Q ss_pred cccccccee-ecCCCceEEEecccchhhhhccCCCCCCccccc-----ceeEEEEEEEEEeCCceEEEEEeecCCCEE
Q psy15307 168 LNNMGVMEY-NTHSKVLSISLRNMQLKKIKRRPEKRGTESVMD-----EKFSLYFSSTFSIGGGELVFQVWTLSLPVV 239 (499)
Q Consensus 168 ln~~~~me~-~~~~g~l~a~Fr~~~Lk~~kr~~~~~g~~~Vte-----ek~~l~F~~~f~~~g~el~~~~~t~SLPvV 239 (499)
+..++++|. ......+.|.|.|+-+.++|++ +-+.....++ -+.-|+|++.+...++ -...|++.|.|+.
T Consensus 83 i~g~~v~ei~~~p~~~Mt~~f~~lGI~~vrn~-Die~~l~~~~~~~~~trvRLvFrv~ip~~~g-~~~~lq~~s~~i~ 158 (161)
T cd07927 83 IGNTKVLEIPLEPKNNMTATIDCAGILKLRNA-DIELRKGETDIKKKNTRARLVFRVHIPEKDG-RIVSLQTASNPIE 158 (161)
T ss_pred ccceEEEEecCCCCcceEEEeccceeEEeehh-hHHHhhccccccccccEEEEEEEEeecCCCC-CEEEEEecCcceE
Confidence 455667776 3345789999999988888863 2222221222 2456899998877653 3567889999986
No 40
>KOG1785|consensus
Probab=22.90 E-value=1e+02 Score=33.76 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=38.8
Q ss_pred CCCCeEEEEeecCCcCcEEEEEecCCCeeeeecCCCcccccccChHhHhCCC-CCccccCCC
Q psy15307 5 QVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLADRISDL-PHLVYLYPD 65 (499)
Q Consensus 5 ~~~gtFllRfSds~~g~it~~~v~~~~~v~~~~P~t~~~l~~~~l~d~i~~~-~~l~~lyp~ 65 (499)
+.||+|..|-|=+.+|--.|.||..+..+.--=|-. .+|-+.+.|= ..=-|||||
T Consensus 277 ~KpGSYIFRlSCTRlGQWAIGYVt~dG~IlQTIP~N------KpL~QaL~eG~keGFYlyPd 332 (563)
T KOG1785|consen 277 KKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPQN------KPLFQALLEGHKEGFYLYPD 332 (563)
T ss_pred cCCCceEEeeccCcccceeEEEEcCCCceeeccCCC------cHHHHHHHhccccceEECCC
Confidence 468999999999999999999998554443333433 4555555442 334689998
No 41
>KOG0194|consensus
Probab=22.71 E-value=61 Score=36.04 Aligned_cols=31 Identities=32% Similarity=0.603 Sum_probs=27.4
Q ss_pred eEEeeechHHHHHHHhhCccceeEEeecCCCCC
Q psy15307 367 HIMGFVRKRKAEEMLASQVKGTFLLRFSDSELG 399 (499)
Q Consensus 367 ~I~GFisk~ea~~~L~~~~~GtfLlRFSds~~g 399 (499)
+-.||+.+++++.+|.+ +|.||||-++...+
T Consensus 51 ~yHG~l~red~~~lL~~--~GDfLvR~s~~~~~ 81 (474)
T KOG0194|consen 51 YYHGLLPREDAEKLLKN--DGDFLVRASEPKEG 81 (474)
T ss_pred cccccccHhHHHHHhCC--CCceEEEeecccCC
Confidence 56699999999999997 99999999988655
No 42
>KOG0790|consensus
Probab=22.04 E-value=86 Score=34.82 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEeecCCcCcEEEEEecCC--------Ceeeee----cC--CCccccc-ccChHhHhCCC
Q psy15307 3 ASQVKGTFLLRFSDSELGGITIAWKGDN--------TEVFML----QP--FTSKDFQ-IRNLADRISDL 56 (499)
Q Consensus 3 ~~~~~gtFllRfSds~~g~it~~~v~~~--------~~v~~~----~P--~t~~~l~-~~~l~d~i~~~ 56 (499)
.+-.+||||+|=|-|..|.+.++=-.|+ .+|-|| || |+..+.. .-||.|.|-.|
T Consensus 128 ekgk~gsfLvReSqs~PGdfVlSvrTdd~~~~~~~~~kVtHvmI~~q~~kydVGgge~F~sltdLidhy 196 (600)
T KOG0790|consen 128 EKGKHGSFLVRESQSHPGDFVLSVRTDDKKESNDSKLKVTHVMIRCQEGKYDVGGGERFDSLTDLVEHY 196 (600)
T ss_pred hcCCCccEEEeccccCCCceEEEEEcCCcccCCCCccceEEEEEEecccccccCCccccchHHHHHHHh
Confidence 4567999999999999999999886533 357666 33 4443321 33566666655
No 43
>KOG4278|consensus
Probab=20.77 E-value=1e+02 Score=35.92 Aligned_cols=54 Identities=26% Similarity=0.485 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEEeecCCcCcEEEEEecCCCeeeeecC--------CCcccccccChHhHhCCC
Q psy15307 2 LASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQP--------FTSKDFQIRNLADRISDL 56 (499)
Q Consensus 2 L~~~~~gtFllRfSds~~g~it~~~v~~~~~v~~~~P--------~t~~~l~~~~l~d~i~~~ 56 (499)
|..--+|+||+|=|||.+|-.+|+---+ .+|+|-.= |-..+-..++||+.+..-
T Consensus 168 LsSgInGSFLVRESEsSpgQ~sISlRye-GRVyHYRINt~~dgK~yvt~EsrF~TLaELVHHH 229 (1157)
T KOG4278|consen 168 LSSGINGSFLVRESESSPGQYSISLRYE-GRVYHYRINTDNDGKMYVTQESRFRTLAELVHHH 229 (1157)
T ss_pred hhcCcccceEEeeccCCCcceeEEEEec-ceEEEEEeeccCCccEEEeehhhhhHHHHHHhhc
Confidence 4556789999999999999999997643 34555432 333445567888877763
No 44
>KOG0194|consensus
Probab=20.26 E-value=52 Score=36.55 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCeEEEEeecCCcC------cEEEEEecCCCeeeeecCCCcc
Q psy15307 6 VKGTFLLRFSDSELG------GITIAWKGDNTEVFMLQPFTSK 42 (499)
Q Consensus 6 ~~gtFllRfSds~~g------~it~~~v~~~~~v~~~~P~t~~ 42 (499)
.+|.||||-|+-..| .+++-|. +..+++|++.-+..
T Consensus 67 ~~GDfLvR~s~~~~~~~~~~~vlSv~~~-~~~~~~h~vi~~~~ 108 (474)
T KOG0194|consen 67 NDGDFLVRASEPKEGEKREFVVLSVKWS-VFKKIKHYVIKRNG 108 (474)
T ss_pred CCCceEEEeecccCCcceeEEEEEEEee-cCCceeEEEEEEcC
Confidence 499999999998655 5666665 33456665554433
Done!