RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15307
(499 letters)
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 329 bits (843), Expect = e-107
Identities = 150/282 (53%), Positives = 193/282 (68%), Gaps = 8/282 (2%)
Query: 139 VKAQIICESQANALLKNEKIGKSDASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKRR 198
VKA II E QA +LLKNE +++ SGEILNN VMEY+ + LS RNM LK+IKR
Sbjct: 242 VKATIISEQQAKSLLKNENT-RNECSGEILNNCCVMEYHQATGTLSAHFRNMSLKRIKR- 299
Query: 199 PEKRGTESVMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITWDN 258
++RG ESV +EKF++ F S FS+G ELVFQV TLSLPVVVIVHG+Q+ NA AT+ WDN
Sbjct: 300 ADRRGAESVTEEKFTVLFESQFSVGSNELVFQVKTLSLPVVVIVHGSQDHNATATVLWDN 359
Query: 259 AFAEPGRSPFVVPDKRPWKMIADVLMMKFES--ATGRTLDAENLNFLAEKAFRQATDIKM 316
AFAEPGR PF VPDK W + + L MKF++ + R L ENL FLA+K F
Sbjct: 360 AFAEPGRVPFAVPDKVLWPQLCEALNMKFKAEVQSNRGLTKENLVFLAQKLFNI----SS 415
Query: 317 AECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRK 376
DY++M ++WSQF +E LP ++TFW WF VM++ ++H K W DG I+GFV K++
Sbjct: 416 NHLEDYNSMSVSWSQFNRENLPGWNYTFWQWFDGVMEVLKKHHKPHWNDGAILGFVNKQQ 475
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVM 418
A ++L ++ GTFLLRFSDSE+GGITIAWK R ++
Sbjct: 476 AHDLLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLK 517
Score = 154 bits (389), Expect = 6e-41
Identities = 55/110 (50%), Positives = 80/110 (72%), Gaps = 5/110 (4%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDN--TEVFMLQPFTSKDFQIRNLADRISDLPH 58
+L ++ GTFLLRFSDSE+GGITIAWK D+ ++ L+PFT++DF IR+LADR+ DL +
Sbjct: 479 LLINKPDGTFLLRFSDSEIGGITIAWKFDSPDRNLWNLKPFTTRDFSIRSLADRLGDLNY 538
Query: 59 LVYLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVKPVLVTHVPGWGSPNNN 108
L+Y++PD+PKD+ F+KYYTP +GYVKP + VP + + + +
Sbjct: 539 LIYVFPDRPKDEVFAKYYTPVLAKAV---DGYVKPQIKQVVPEFVNASTD 585
Score = 42.1 bits (98), Expect = 4e-04
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 380 MLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGELVF 439
M Q GT F + L I A + G E SV +EKF++ F S FS+G ELVF
Sbjct: 276 MEYHQATGTLSAHFRNMSLKRIKRADRRGAE-----SVTEEKFTVLFESQFSVGSNELVF 330
Query: 440 QL 441
Q+
Sbjct: 331 QV 332
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 295 bits (756), Expect = 1e-93
Identities = 83/278 (29%), Positives = 134/278 (48%), Gaps = 23/278 (8%)
Query: 138 SVKAQIICESQANALLKNEKIGKSDASGEILNNMGVMEY-NTHSKVLSISLRNMQLKKIK 196
+K I +S A L+ + + N VM +++ LS +++ L++ +
Sbjct: 237 KIKVCIDKDSGDVAALRGSR-----KFNILGTNTKVMNMEESNNGSLSAEFKHLTLREQR 291
Query: 197 R----RPEKRGTESVMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHA 252
R + V +E + F + G L + T SLPVVVI + Q PNA A
Sbjct: 292 CGNGGRANCDASLIVTEELHLITFETEVYHQG--LKIDLETHSLPVVVISNICQMPNAWA 349
Query: 253 TITWDNAFAEPGRSP--FVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQ 310
+I W N ++ F P W +A+VL +F S T R L E L LAEK
Sbjct: 350 SILWYNMLTNNPKNVNFFTKPPIGTWDQVAEVLSWQFSSTTKRGLSIEQLTTLAEKLLGP 409
Query: 311 ATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMG 370
+YS + W++FCKE + + F+FW W ++ L ++++ +W +G+IMG
Sbjct: 410 --------GVNYSGCQITWAKFCKENMAGKGFSFWVWLDNIIDLVKKYILALWNEGYIMG 461
Query: 371 FVRKRKAEEMLASQVKGTFLLRFSD-SELGGITIAWKG 407
F+ K + +L+++ GTFLLRFS+ S+ GG+T W
Sbjct: 462 FISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVE 499
Score = 126 bits (316), Expect = 4e-31
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 1 MLASQVKGTFLLRFSD-SELGGITIAWKGDN----TEVFMLQPFTSKDFQIRNLADRISD 55
+L+++ GTFLLRFS+ S+ GG+T W + T++ ++P+T + + A+ I
Sbjct: 471 ILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYTKQQLNNMSFAEIIMG 530
Query: 56 ----------LPHLVYLYPDKPKDQAFSKYYTPFQDSQPMGTN----GYVKPVLVTHVPG 101
+ LVYLYPD PK++AF KY P P Y+K + P
Sbjct: 531 YKIMDATNILVSPLVYLYPDIPKEEAFGKYCRPESQEHPEADPGSAAPYLKTKFICVTPF 590
Query: 102 W 102
Sbjct: 591 I 591
Score = 42.1 bits (98), Expect = 4e-04
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 376 KAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGG 435
K M S G+ F L G ++ V +E + F + G
Sbjct: 266 KVMNMEESN-NGSLSAEFKHLTLREQRCGNGGRANCDASLIVTEELHLITFETEVYHQGL 324
Query: 436 ELVFQ 440
++ +
Sbjct: 325 KIDLE 329
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 284 bits (728), Expect = 1e-88
Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 24/288 (8%)
Query: 138 SVKAQIICESQANALLKNEKIGKSDASGEIL-NNMGVMEY-NTHSKVLSISLRNMQLKKI 195
++K +++ + N K IL + VM + + L+ R++QLK+
Sbjct: 357 NLKVKVLFDKDVNE----RNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQ 412
Query: 196 KRRPEKRGTES---VMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHA 252
K R E V +E SL F + G LV + T SLPVVVI + +Q P+ A
Sbjct: 413 KN-AGTRTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSLPVVVISNVSQLPSGWA 469
Query: 253 TITWDNAFAEPGRS--PFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQ 310
+I W N R+ F+ P W +++VL +F S T R L+ + LN L EK
Sbjct: 470 SILWYNMLVAEPRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGP 529
Query: 311 ATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMG 370
+ L+ W++FCKE + D++F FW W ++++L ++HL +W DG IMG
Sbjct: 530 N---------ASPDGLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMG 580
Query: 371 FVRKRKAEEMLASQVKGTFLLRFSDSEL-GGITIAWKGGPEKRGTVSV 417
F+ K + +L Q GTFLLRFS+S G IT W + G
Sbjct: 581 FISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDF 628
Score = 113 bits (282), Expect = 1e-26
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 1 MLASQVKGTFLLRFSDSEL-GGITIAWKGDN-----TEVFMLQPFTSKDFQIRNLADRIS 54
+L Q GTFLLRFS+S G IT W + + ++P+T K+ D I
Sbjct: 590 LLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIR 649
Query: 55 DL----------PHLVYLYPDKPKDQAFSKYYT 77
+ L YLYP+ KD AF KYY+
Sbjct: 650 NYKVMAAENIPENPLKYLYPNIDKDHAFGKYYS 682
Score = 36.8 bits (84), Expect = 0.018
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 376 KAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGG 435
K M S G+ F +L A E G + V +E SL F + G
Sbjct: 388 KVMNMEEST-NGSLAAEFRHLQLKEQKNAGTRTNE--GPLIVTEELHSLSFETQLCQPGL 444
Query: 436 ELVFQ-----LFISMNTSRIGEDIEPLL----LVPTPRNIVVDGPPPYAEDTWDWV 482
+ + + + N S++ +L LV PRN+ PP A W +
Sbjct: 445 VIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLTPPCA--RWAQL 498
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 275 bits (705), Expect = 2e-86
Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 24/288 (8%)
Query: 138 SVKAQIICESQANALLKNEKIGKSDASGEIL-NNMGVMEY-NTHSKVLSISLRNMQLKKI 195
++K +++ + N K IL + VM + + L+ R++QLK+
Sbjct: 222 NLKVKVLFDKDVNE----RNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQ 277
Query: 196 KRRPEKRGTES---VMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHA 252
K R E V +E SL F + G LV + T SLPVVVI + +Q P+ A
Sbjct: 278 KN-AGTRTNEGPLIVTEELHSLSFETQLCQPG--LVIDLETTSLPVVVISNVSQLPSGWA 334
Query: 253 TITWDNAFAEPGRS--PFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKAFRQ 310
+I W N R+ F+ P W +++VL +F S T R L+ + LN L EK
Sbjct: 335 SILWYNMLVAEPRNLSFFLTPPCARWAQLSEVLSWQFSSVTKRGLNVDQLNMLGEKLLGP 394
Query: 311 ATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMG 370
+ L+ W++FCKE + D++F FW W ++++L ++HL +W DG IMG
Sbjct: 395 NAS---------PDGLIPWTRFCKENINDKNFPFWLWIESILELIKKHLLPLWNDGCIMG 445
Query: 371 FVRKRKAEEMLASQVKGTFLLRFSDSEL-GGITIAWKGGPEKRGTVSV 417
F+ K + +L Q GTFLLRFS+S G IT W + G
Sbjct: 446 FISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDF 493
Score = 121 bits (304), Expect = 1e-29
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 1 MLASQVKGTFLLRFSDSEL-GGITIAWKGDN-----TEVFMLQPFTSKDFQIRNLADRIS 54
+L Q GTFLLRFS+S G IT W + + ++P+T K+ D I
Sbjct: 455 LLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHAVEPYTKKELSAVTFPDIIR 514
Query: 55 DLP----------HLVYLYPDKPKDQAFSKYYTPFQDSQ------PMGTNGYVKPVLVT 97
+ L YLYP+ KD AF KYY+ +++ GY+K L++
Sbjct: 515 NYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDGPKGTGYIKTELIS 573
Score = 36.0 bits (82), Expect = 0.032
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 17/131 (12%)
Query: 376 KAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGG 435
K M S G+ F +L A E G + V +E SL F + G
Sbjct: 253 KVMNMEEST-NGSLAAEFRHLQLKEQKNAGTRTNE--GPLIVTEELHSLSFETQLCQPGL 309
Query: 436 ELVFQ-----LFISMNTSRIGEDIEPLL----LVPTPRNIVVDGPPPYAEDTWDWVRFNS 486
+ + + + N S++ +L LV PRN+ PP A W + S
Sbjct: 310 VIDLETTSLPVVVISNVSQLPSGWASILWYNMLVAEPRNLSFFLTPPCA--RWAQL---S 364
Query: 487 DVITRQVKPCT 497
+V++ Q T
Sbjct: 365 EVLSWQFSSVT 375
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 172 bits (437), Expect = 2e-48
Identities = 54/280 (19%), Positives = 92/280 (32%), Gaps = 67/280 (23%)
Query: 139 VKAQIICESQANALLKNEKIGKSDASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKR- 197
VKA +IC+S + D + + L+ L ++
Sbjct: 170 VKATMICDSHPTNKNNPTTPLEMD--SQPIYP----------ATLTAHFPLKFLAGTRKC 217
Query: 198 -RPEKRGTESVMDEKFSLYFSSTFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITW 256
K G + + S S P VVI + Q + +
Sbjct: 218 SVNLKFGVNIRDLDNVTTTVESD--------------ASNPFVVITNECQWEGSAGVLLK 263
Query: 257 DNAFAEPGRSPFVVPDKRPWKMIADVLMMKFESATG-------RTLDAENLNFLAEKAFR 309
+AF + W + L F AT R L + +L ++ F
Sbjct: 264 KDAFDGQ--------LEITWAQFINTLQRHFLIATKQDPVRPKRPLSSYDLKYIQTHFFG 315
Query: 310 QATDIKMAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTR--EHLKNVWTDGH 367
+++ F K FW WF M+ R H+ +W +G
Sbjct: 316 N-------------RSIIHQQDFDK---------FWVWFGKSMQTLRYQRHISTLWQEGI 353
Query: 368 IMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKG 407
I G++ +++ + L +Q GTF++RFS+ G IA+ G
Sbjct: 354 IYGYMGRQEVNDALQNQDPGTFIIRFSERNPGQFGIAYIG 393
Score = 95.8 bits (237), Expect = 2e-21
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 19/107 (17%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKG----DNTEVFMLQPFTSKDFQIRNLADRISDL 56
L +Q GTF++RFS+ G IA+ G + +++QP + D +S+
Sbjct: 366 ALQNQDPGTFIIRFSERNPGQFGIAYIGVEMPARIKHYLVQPND-TAAAKKTFPDFLSEH 424
Query: 57 PHLVYL------------YPDKPKDQAFSKYYTPFQDSQPMGTNGYV 91
V L + KD A + P+ GY
Sbjct: 425 SQFVNLLQWTKDTNGAPRFLKLHKDTALGSFAPKRT--APVPVGGYE 469
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 6e-06
Identities = 80/577 (13%), Positives = 142/577 (24%), Gaps = 214/577 (37%)
Query: 16 DSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLAD------------RISDLPH----- 58
D E G +K D VF F +F +++ D I
Sbjct: 8 DFETGEHQYQYK-DILSVF-EDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 59 --LVYLYPDKPKD--QAF------SKY---YTPFQ--DSQP-MGTNGYVKPVLVTHVPGW 102
L + K ++ Q F Y +P + QP M T Y++ +
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----QRDRLY 120
Query: 103 GS--------------------------PNNN----GMGGM----------NSYP----- 117
P N G+ G SY
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 118 ------------STP-------QNMFHPHSPPDHTRDTASVKAQIICESQANA---LLKN 155
++P Q + + P +R S ++ S LLK+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 156 EKIGKS----D--ASGEILNNMGVMEYNTHSKVLSISLRNMQLKKIKRRPEKRGTESVMD 209
+ + + N + K+L + R Q+ T +D
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNL-----SCKILLTT-RFKQV--TDFLSAATTTHISLD 292
Query: 210 EKFSLYFSSTFSIGGGELVFQVWT----LSLPVVVIVHGNQEPNAHATI---------TW 256
S T + + + + LP V + N P + I TW
Sbjct: 293 H-----HSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTN--PRRLSIIAESIRDGLATW 344
Query: 257 DNAFAEPGRSPFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEKA-------FR 309
DN WK V K + +L L + F
Sbjct: 345 DN-----------------WK---HVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFP 382
Query: 310 QATDIK-------------------MAECADYSNMLLNWSQFCKEPLPDRSF-------- 342
+ I + + YS ++ + +P
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLEN 441
Query: 343 ------TFWDWFYAVMKLTREHLKNVWTDGHIMGFV-----RKRKAEEMLASQVKGTFL- 390
+ D + + L + D + + E M + + FL
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLD 499
Query: 391 LRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFS 427
RF + ++ + AW T+ + + + Y
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYIC 535
Score = 40.2 bits (93), Expect = 0.001
Identities = 33/276 (11%), Positives = 72/276 (26%), Gaps = 85/276 (30%)
Query: 266 SPFVVPDKRPWKMIADVLM------------MKFESATGRT-LDAENLNFLAEKAFRQAT 312
+ + V +P+ + L+ + +G+T + + +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCL---SYKVQCKM 180
Query: 313 D-----IKMAECAD-----------YSNMLLNWSQFCK--EPLPDRSFTFWDWFYAVMKL 354
D + + C + NW+ + R + ++K
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 355 TREH------LKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGG 408
+ + L NV F L+ ++ LL + +
Sbjct: 241 -KPYENCLLVLLNVQNAKAWNAF--------NLSCKI----LLTTRFKQ-----VTDFLS 282
Query: 409 PEKRGTVSVMDEKFSLYFSSTFSIGGGELVFQLFISMNTSRIGE---DIEPLLLVPTPRN 465
+S+ +L S+ ++ + P L +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNPRRL-----S 331
Query: 466 IVV----DGPPPYAEDTWD-WVRFNSDVITRQVKPC 496
I+ DG TWD W N D +T ++
Sbjct: 332 IIAESIRDGL-----ATWDNWKHVNCDKLTTIIESS 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 6e-04
Identities = 67/454 (14%), Positives = 128/454 (28%), Gaps = 183/454 (40%)
Query: 3 ASQVKGTFLLRFSDSEL---------------GGITIAWKGDNTEVFM-LQ-------PF 39
A + + S+S L GG +G+ + F L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-----QGNTDDYFEELRDLYQTYHVL 183
Query: 40 TSKDFQIRNLADRISDLPHLV----YLYP-------------DKPKDQ------------ 70
D I+ A+ +S+L ++ + P
Sbjct: 184 V-GDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 71 ---AFSKY--------YTPFQDSQPM-GTNGYVKPVL----VTHVPGWGSPNNNGMGGMN 114
+ Y +TP + + G G+ + ++ + W S + +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI- 300
Query: 115 SYPSTPQNMFH---------PHS--PPDHTRDTASVKAQIICESQANALLKNEKIGKSDA 163
+F P++ PP D S++ E + +L S+
Sbjct: 301 ------TVLFFIGVRCYEAYPNTSLPPSILED--SLENN---EGVPSPML-----SISNL 344
Query: 164 SGEILNNMGVMEYNTH---SKVLSISLRN------------------MQLKKIKRRPEKR 202
+ E + + V + N+H K + ISL N + L+K K
Sbjct: 345 TQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 203 GTESVMDE---KFSLYF---SSTF-S-------------IGGGELVFQVWTLSLPV---- 238
+ E KFS F +S F S + + F + +PV
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 239 ----VVIVHGNQEPN-----AHATITWDNA----------FAEPGRSPFVVPDKRPWKMI 279
+ ++ G+ + W+ F PG + +
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGV-------- 514
Query: 280 ADVLMMKFESATG-RTLDAENLNF--LAEKAFRQ 310
L + + TG R + A L+ + F+Q
Sbjct: 515 ---LTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 38.1 bits (88), Expect = 0.007
Identities = 64/365 (17%), Positives = 95/365 (26%), Gaps = 150/365 (41%)
Query: 177 NTHSKVLSI--SLRNMQLKK---IK---------RRPEKRGTES-----VMDEKFSLYFS 217
+ H+ + +K IK +RP + + S V + L
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-- 157
Query: 218 STFSIGGGELVFQVWTLSLPVVVIVHGNQEPNAHATITWDNAFAE---------PGRSPF 268
+ F GG Q GN + + F E
Sbjct: 158 AIF---GG----Q-------------GNTD-------DY---FEELRDLYQTYHVLVGDL 187
Query: 269 VVPDKRPWKMIADVLM------MKFESATGRTLDAENLNFLAEKAFRQATDIKMAECADY 322
+ K A+ L + E + L+ L +L + D +
Sbjct: 188 I-------KFSAETLSELIRTTLDAEKVFTQGLNI--LEWLENPSNTPDKDY-LLSIP-I 236
Query: 323 SNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLT-------REHLKNVWTDGHIMG----- 370
S L+ Q + KL R +LK GH G
Sbjct: 237 SCPLIGVIQLA-------------HYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAV 281
Query: 371 ----------FVRK-RKAEEML------ASQVKGTFLLRFS---DSELGGITIAWKGGPE 410
F RKA +L + L S DS +G P
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-----EGVP- 335
Query: 411 KRGTVSVMDEKFSLYFSSTFSIGG--GELVFQLFISMNTS-RIGEDIEPLLLVPTPRNIV 467
S M SI E V N+ G+ +E + LV +N+V
Sbjct: 336 -----SPM-----------LSISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLVNGAKNLV 378
Query: 468 VDGPP 472
V GPP
Sbjct: 379 VSGPP 383
Score = 28.5 bits (63), Expect = 7.2
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 25/74 (33%)
Query: 156 EKIGKSDASGEIL---NNMGVMEYNTHSKVLSIS------------LRNMQLKKIK--RR 198
E++GK +G ++ N YN ++ + L ++L+KI
Sbjct: 1831 ERVGK--RTGWLVEIVN------YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 199 PEKRGTESVMDEKF 212
+ E V F
Sbjct: 1883 QKSLSLEEVEGHLF 1896
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 35.0 bits (81), Expect = 0.013
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
G + + AE +L SQ G+FL+R S S +G
Sbjct: 21 GAISREDAENLLESQPLGSFLIRVSHSHVG 50
Score = 26.9 bits (60), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1 MLASQVKGTFLLRFSDSELG 20
+L SQ G+FL+R S S +G
Sbjct: 31 LLESQPLGSFLIRVSHSHVG 50
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 36.9 bits (84), Expect = 0.017
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 179 HSKVLSISLRNMQLKKIKRRPEKRGTESVMDEKFSLYFSSTFSIGGGELVFQVWTLSLPV 238
++ + L N L+ I RG + +++++L + G + ++ +L
Sbjct: 67 LNQFRYLPLEN--LRII------RG-TKLYEDRYALAIFLNYRKDGNFGLQELGLKNLTE 117
Query: 239 V----VIVHGNQEPNAHATITWDNAFAEPGRSPFVVPDKRP 275
+ V V N+ TI W + P S +
Sbjct: 118 ILNGGVYVDQNKFLCYADTIHWQDIVRNPWPSNLTLVSTNG 158
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 34.5 bits (79), Expect = 0.041
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEKRGTVSVMDEKFSLYFSSTFSIGGGE 436
AE +L + +GTFLLR S E +++++ ++ E ++ FS +
Sbjct: 46 AEALLEGKPEGTFLLRDSAQEDYLFSVSFRRY---SRSLHARIE----QWNHNFSFDAHD 98
Query: 437 LVFQLFISMN-------TSRIGEDIEPLLLVPTPRNIVV 468
+ EPLL P R
Sbjct: 99 PCVFHSPDITGLLEHYKDPSACMFFEPLLSTPLIRTFPF 137
Score = 30.2 bits (68), Expect = 1.1
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQI---RNLADRISDLP 57
+L + +GTFLLR S E +++++ + + + +F D+
Sbjct: 49 LLEGKPEGTFLLRDSAQEDYLFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCVFHSPDIT 108
Query: 58 HLVYLYPDKPKDQAFSKYYT-PFQDSQPM 85
L+ Y D F + P + P
Sbjct: 109 GLLEHYKDPSACMFFEPLLSTPLIRTFPF 137
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 33.4 bits (77), Expect = 0.042
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 336 PLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSD 395
+ +T + WF + R+ + + +L S GT+L+R
Sbjct: 7 GSREIDYTAYPWFAG--NMERQ------------------QTDNLLKSHASGTYLIRERP 46
Query: 396 SELG 399
+E
Sbjct: 47 AEAE 50
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 33.1 bits (76), Expect = 0.066
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 20/62 (32%)
Query: 338 PDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSE 397
P + + W+ + R AE +LA++ GTFL+R +
Sbjct: 19 PPQDLSVHLWYAG--PMERA------------------GAESILANRSDGTFLVRQRVKD 58
Query: 398 LG 399
Sbjct: 59 AA 60
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 32.6 bits (74), Expect = 0.098
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 376 KAEEMLASQVKGTFLLRFSDSELGGITIA 404
+A +L + G FL+R S S G +A
Sbjct: 31 QAIALLKDKDPGAFLIRDSHSFQGAYGLA 59
Score = 29.5 bits (66), Expect = 1.1
Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 17/80 (21%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTS------KDFQIRNLADRI- 53
+L + G FL+R S S G +A K + F I +
Sbjct: 35 LLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVK 94
Query: 54 ----------SDLPHLVYLY 63
L LV +
Sbjct: 95 IKGCPSEPYFGSLSALVSQH 114
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 32.5 bits (74), Expect = 0.12
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITI 403
AE LA+ G+FL+R S + +++
Sbjct: 36 AEGKLANVPDGSFLVRDSSDDRYLLSL 62
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 33.3 bits (76), Expect = 0.12
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 358 HLKNVWTDGHIMGFVRKR-KAEEMLASQVK------GTFLLRFSDSELGGITI 403
H W G + R AE +L G+FL+R S++ +G T+
Sbjct: 1 HSSEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTL 53
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 31.4 bits (72), Expect = 0.14
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
+ + +AE +L + G F++R S S G
Sbjct: 14 EGLSRHQAENLLMGKDIGFFIIRASQSSPG 43
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 32.6 bits (74), Expect = 0.14
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITI 403
A +L+++ GTFL+R S + T+
Sbjct: 46 ANLLLSAEPAGTFLIRDSSDQRHFFTL 72
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 31.8 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
G V + AE +L+S + G+FL+R S+S G
Sbjct: 10 GPVSRNAAEYLLSSGINGSFLVRESESSPG 39
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 31.5 bits (72), Expect = 0.15
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 370 GFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITIAWKGGPEKRGTV 415
+ ++ AE L + G+FL+R S+S G +++ K + V
Sbjct: 17 RTISRKDAERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVV 64
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 31.4 bits (72), Expect = 0.16
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
G + ++A + L G FL+R S G
Sbjct: 10 GKISGQEAVQQLQPPEDGLFLVRESARHPG 39
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 32.9 bits (75), Expect = 0.16
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 22/83 (26%)
Query: 316 MAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKR 375
E +++ + ++ + + W+++ LTRE
Sbjct: 130 KLEGEALEQAIISQAPQVEKLIATTAHERMPWYHS--SLTRE------------------ 169
Query: 376 KAEEML--ASQVKGTFLLRFSDS 396
+AE L +Q G FLLR
Sbjct: 170 EAERKLYSGAQTDGKFLLRPRKE 192
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 376 KAEEML--ASQVKGTFLLRFSDSELGGITI 403
+AEE L A G FLLR LGG +
Sbjct: 17 EAEEHLKLAGMADGLFLLRQCLRSLGGYVL 46
Score = 29.5 bits (66), Expect = 2.2
Identities = 19/139 (13%), Positives = 30/139 (21%), Gaps = 10/139 (7%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIA-WKGDNTEVFMLQPFTSKDFQIRNLADRISDLPHL 59
LA G FLLR LGG ++ F ++ + + I L
Sbjct: 23 KLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAG-GKAHCGPAEL 81
Query: 60 V--------YLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVKPVLVTHVPGWGSPNNNGMG 111
L + K P + V+ + G +
Sbjct: 82 CEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAII 141
Query: 112 GMNSYPSTPQNMFHPHSPP 130
P
Sbjct: 142 SQAPQVEKLIATTAHERMP 160
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
G V + AE +L+S + G+FL+R S+S G
Sbjct: 21 GPVSRSAAEYLLSSLINGSFLVRESESSPG 50
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 31.5 bits (72), Expect = 0.20
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITI 403
G V +++A+ L Q G FL+R S + G +
Sbjct: 24 GPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVL 57
Score = 26.8 bits (60), Expect = 7.6
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIA-WKGDNTEVFMLQPFTSKDFQIRNLADRISDLPHL 59
L Q G FL+R S + G ++ + +++ ++ F+I + LP L
Sbjct: 34 RLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGD--QEFDHLPAL 91
Query: 60 V 60
+
Sbjct: 92 L 92
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 31.9 bits (72), Expect = 0.23
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITI 403
A +L+++ GTFL+R S + T+
Sbjct: 35 ANLLLSAEPAGTFLIRDSSDQRHFFTL 61
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 31.0 bits (70), Expect = 0.25
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITI 403
G + +++A +L Q G FL+R S + G +
Sbjct: 5 GRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVL 38
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 31.7 bits (72), Expect = 0.30
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGGITI 403
A+E L +GTFL+R S +TI
Sbjct: 29 AKEKLKEAPEGTFLIRDSSHSDYLLTI 55
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 30.7 bits (70), Expect = 0.33
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSE 397
G + KAE +L + GTFL+R S +
Sbjct: 15 GSSNRNKAENLLRGKRDGTFLVRESSKQ 42
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 30.7 bits (70), Expect = 0.36
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 375 RKAEEMLASQVKGTFLLRFSDSELGG---ITIAWKGGPEKRGTVSVMDEKFSLYFSSTF- 430
+ E L GTFL+R + +++ G +T+ KGG K + D K+ TF
Sbjct: 21 EEVNEKLRDTADGTFLVRDASTKMHGDYTLTL-RKGGNNKLIKIFHRDGKYGFSDPLTFS 79
Query: 431 SIGGGELVFQLFISMNTSRIGEDIEPL-LLVPTPR 464
S+ EL+ + + LL P +
Sbjct: 80 SV--VELI--NHYRNESLAQYNPKLDVKLLYPVSK 110
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 31.8 bits (71), Expect = 0.43
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGG 408
G + +++A +L Q G FL+R S + G ++
Sbjct: 18 GRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSEN 56
Score = 27.9 bits (61), Expect = 6.8
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 20/140 (14%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLADRISDLPHLV 60
+L Q G FL+R S + G ++ ++ V + I P +
Sbjct: 28 LLQGQRHGVFLVRDSSTSPGDYVLSVSENS-RV--------SHYIIN----SSGPRPPVP 74
Query: 61 YLYPDKPKDQAFSKYYTPFQD-------SQPMGTNGYVKPVLVTHVPGWGSPNNNGMGGM 113
P + S+ Q+ + + L+ V + +
Sbjct: 75 PSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQE 134
Query: 114 NSYPSTPQNMFHPHSPPDHT 133
+ F+ + D
Sbjct: 135 EAEYVRALFDFNGNDEEDLP 154
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 30.4 bits (69), Expect = 0.45
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 370 GFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITI 403
+ + +A+ ++ Q V G FL+R S S +
Sbjct: 31 HKISRDEAQRLIIQQGLVDGVFLVRDSQSNPKTFVL 66
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 30.0 bits (68), Expect = 0.61
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 22/60 (36%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITI 403
WF+ +++RE +++ ++ Q V G FL+R S G +
Sbjct: 15 LWFHG--RISRE------------------ESQRLIGQQGLVDGLFLVRESQRNPQGFVL 54
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 29.5 bits (67), Expect = 0.69
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 20/54 (37%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELG 399
WF+ K+TRE +AE +L G FL+R S + G
Sbjct: 9 PWFHG--KITRE------------------QAERLLYPPETGLFLVRESTNYPG 42
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 31.3 bits (70), Expect = 0.72
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 377 AEEMLASQVKGTFLLRFSDSELGG---ITIAWKGGPEKRGTVSVMDEKFSLYFSSTF-SI 432
E L GTFL+R + +++ G +T+ KGG K + D K+ TF S+
Sbjct: 22 VNEKLRDTADGTFLVRDASTKMHGDYTLTL-RKGGNNKLIKIFHRDGKYGFSDPLTFSSV 80
Query: 433 GGGELVFQLFISMNTSRIGEDIEPL-LLVPTPRNIVVDGPPPYAEDTWDW 481
EL+ + + LL P + +
Sbjct: 81 --VELI--NHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKEDNIEAVGK 126
Score = 30.6 bits (68), Expect = 1.2
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 333 CKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLR 392
E L + + + H + W G + KAE +L + GTFL+R
Sbjct: 273 LNEWLGNENTEDQYSLVEDDEDLPHHDEKTWNVGSS----NRNKAENLLRGKRDGTFLVR 328
Query: 393 FSDS 396
S
Sbjct: 329 ESSK 332
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 31.3 bits (71), Expect = 0.81
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGGITI 403
G V + AE +L+S + G+FL+R S+S G +I
Sbjct: 110 GPVSRNAAEYLLSSGINGSFLVRESESSPGQRSI 143
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 30.8 bits (69), Expect = 0.86
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 369 MGFVRKRKAEEMLASQVKGTFLLRFSDS 396
+G + + +AEEML+ + GTFL+R S
Sbjct: 198 VGKINRTQAEEMLSGKRDGTFLIRESSQ 225
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 29.2 bits (66), Expect = 0.88
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 22/56 (39%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ--VKGTFLLRFSDSELG 399
WF+ +++RE ++ ++ Q V G FLLR S S
Sbjct: 6 HWFHG--RISRE------------------ESHRIIKQQGLVDGLFLLRDSQSNPK 41
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 29.2 bits (66), Expect = 0.92
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 375 RKAEEMLASQVKGTFLLRFSDSELGG--ITIAWKGGP------EKRGTVSVMDEKFS 423
R+AE +L Q+ G FL+R S + G +T G P + G V D +F
Sbjct: 17 REAEALL--QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFE 71
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 29.2 bits (66), Expect = 1.0
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 370 GFVRKRKAEEMLASQ-VKGTFLLRFSDSELG 399
G + + E++L + + G++LLR S+S G
Sbjct: 9 GKISRETGEKLLLATGLDGSYLLRDSESVPG 39
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 30.7 bits (68), Expect = 1.0
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 336 PLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSD 395
S W+ ++R+ +A+ L Q G FL+R S
Sbjct: 3 SARFDSSDRSAWYMG--PVSRQ------------------EAQTRLQGQRHGMFLVRDSS 42
Query: 396 SELGGITIA-WKGGPEKRGTVSVMDEKFSLYFSSTFS 431
+ G ++ + ++ + + F
Sbjct: 43 TCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFD 79
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 30.7 bits (69), Expect = 1.0
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 22/59 (37%)
Query: 347 WFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITI 403
+F+ +TRE +AE+ L G +LLR S + LGG +
Sbjct: 7 FFFG--NITRE------------------EAEDYLVQGGMSDGLYLLRQSRNYLGGFAL 45
Score = 28.7 bits (64), Expect = 3.5
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 22/83 (26%)
Query: 316 MAECADYSNMLLNWSQFCKEPLPDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKR 375
+ +++ ++ + + WF+ K++RE
Sbjct: 129 NLQGQALEQAIISQKPQLEKLIATTAHEKMPWFHG--KISRE------------------ 168
Query: 376 KAEEMLASQVK--GTFLLRFSDS 396
++E+++ K G FL+R D+
Sbjct: 169 ESEQIVLIGSKTNGKFLIRARDN 191
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES;
1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A
2l3t_A 3gxw_A 3gxx_A
Length = 197
Score = 30.2 bits (68), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 375 RKAEEMLASQVKGTFLLRFSDSELGGITIAWK 406
++AE+ L S+ +G F++R S + I WK
Sbjct: 17 KQAEDYLRSKERGDFVIRQSSRGDDHLAITWK 48
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 28.8 bits (65), Expect = 1.3
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 370 GFVRKRKAEEMLASQ--VKGTFLLRFSDSELGGITI 403
+ ++ AE L + G+FL+R S+S G ++
Sbjct: 9 KNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSL 44
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 370 GFVRKRKAEEMLASQVK--GTFLLRFSDSELGGITI 403
G +++ AE+ L G FL+R S+S+ G ++
Sbjct: 21 GAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSL 56
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 370 GFVRKRKAEEMLASQ-VKGTFLLRFSDSELG 399
G + KR+ E +L V G FL+R S+S G
Sbjct: 8 GCLTKRECEALLLKGGVDGNFLIRDSESVPG 38
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 28.3 bits (64), Expect = 1.6
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 22/60 (36%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK--GTFLLRFSDSELGGITI 403
WF+ ++R +A L ++ G FL+R S+ +
Sbjct: 3 PWFFG--CISRS------------------EAVRRLQAEGNATGAFLIRVSEKPSADYVL 42
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 30.2 bits (68), Expect = 1.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 363 WTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITIAWKGGPE-KRGTVSVMDE 420
W +I G +AE +L ++ V G+FL R S S G +T++ + + +
Sbjct: 6 WFHPNITGV----EAENLLLTRGVDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGD 61
Query: 421 KFSLYFSSTFS 431
+ LY F+
Sbjct: 62 YYDLYGGEKFA 72
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 370 GFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITI 403
G + + E++L + + G++LLR S+S G +
Sbjct: 9 GKISRETGEKLLLATGLDGSYLLRDSESVPGVYCL 43
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 21/55 (38%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELG 399
WF+ K++++ +A +L + +FL+R SD+ G
Sbjct: 17 IWFHG--KISKQ------------------EAYNLLMTVGQVCSFLVRPSDNTPG 51
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 21/52 (40%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK-GTFLLRFSDS 396
DWF ++R ++E++L + K G F++R S
Sbjct: 12 DWFAG--NISRS------------------QSEQLLRQKGKEGAFMVRNSSQ 43
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 29.9 bits (68), Expect = 2.1
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 340 RSFTFWDWFYAVMKLTREHLKNVWT-DGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSEL 398
T + K RE +++ +V++R+ +V L + +E
Sbjct: 177 SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKAEE 236
Query: 399 GGIT 402
G
Sbjct: 237 GAQD 240
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 21/55 (38%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK-GTFLLRFSDSELG 399
WF+ +T +AE +L ++ G+FL R S S G
Sbjct: 8 RWFHP--NITGV------------------EAENLLLTRGVDGSFLARPSKSNPG 42
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 29.9 bits (67), Expect = 2.3
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 363 WTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITIAWKGGPE-KRGTVSVMDE 420
W + G AE +L + V G+FL R S G +++ + G + + +
Sbjct: 4 WFHRDLSGL----DAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD 59
Query: 421 KFSLYFSSTFS 431
+ LY F+
Sbjct: 60 FYDLYGGEKFA 70
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 21/58 (36%)
Query: 347 WFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITI 403
W + +TR KAEE+L+ G+FL+R S+S +
Sbjct: 12 WNHG--NITRS------------------KAEELLSRTGKDGSFLVRASESISRAYAL 49
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 29.9 bits (67), Expect = 2.4
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 363 WTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELGGITIAWKGGPE-KRGTVSVMDE 420
W + G AE +L + V G+FL R S G +++ + G + + +
Sbjct: 4 WFHRDLSGL----DAETLLKGRGVHGSFLARPSRKNQGDFSLSVRVGDQVTHIRIQNSGD 59
Query: 421 KFSLYFSSTFS 431
+ LY F+
Sbjct: 60 FYDLYGGEKFA 70
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 28.1 bits (63), Expect = 2.5
Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 370 GFVRKRKAEEML-ASQVKGTFLLRFSDS 396
+ + KAE++L + +G F++R S +
Sbjct: 14 KSISRDKAEKLLLDTGKEGAFMVRDSRT 41
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 28.4 bits (64), Expect = 2.6
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 21/52 (40%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK-GTFLLRFSDS 396
+W++ +TR +AE +L + K G F++R S
Sbjct: 17 EWYHR--NITRN------------------QAEHLLRQESKEGAFIVRDSRH 48
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 29.4 bits (67), Expect = 2.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 61 YLYPDKPKDQAFSKYYTPFQDSQ---PMGTNGYV 91
Y YPD PK+ +Q SQ P+G G +
Sbjct: 81 YFYPDLPKN---------YQISQYDLPLGRGGSL 105
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 27.5 bits (62), Expect = 2.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 21/55 (38%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQ-VKGTFLLRFSDSELG 399
WF+ K+ R KAEEML+ Q G FL+R S+S G
Sbjct: 4 AWFFG--KIPRA------------------KAEEMLSKQRHDGAFLIRESESAPG 38
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 29.2 bits (64), Expect = 3.1
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 358 HLKNVWTDGHIMGFVRKRKAEEMLASQVKGTFLLRFSDSELGGITI 403
++ W G + +++A +L Q G FL+R S + G +
Sbjct: 8 EERSSWYWGRL----SRQEAVALLQGQRHGVFLVRDSSTSPGDYVL 49
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 3.2
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 262 EPGRSPFVVPDKRPWKMIADVLMMKFESATGRTLDAENLNFLAEK----AFR-QATDIKM 316
+ V P R ++ E + + + L E A +I
Sbjct: 134 DSDDKAKVPPLIR--------IVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILF 185
Query: 317 AECADYSNMLLNWSQFCKEPLPDRSFTFWD 346
+E D N + ++ TFWD
Sbjct: 186 SENNDMDNNNDGVDEL------NKKCTFWD 209
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 28.9 bits (64), Expect = 3.2
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 370 GFVRKRKAEEMLASQVK-GTFLLRFSDSELGGITIAWKGGPEKRGTVS---VMDEKFSLY 425
G + + KAEEML+ Q G FL+R S+S G +++ K G V V+ + Y
Sbjct: 63 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFG----NDVQHFKVLRDGAGKY 118
Query: 426 FSSTFSIGGGELVFQLFISMNTSRIGEDIEPLLLVPTPRNIVVDGPPPY-AEDTWDWVRF 484
F + S + SR + + + V + ++ +
Sbjct: 119 FLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFR 178
Query: 485 NSDVIT 490
D I
Sbjct: 179 RGDFIH 184
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 29.0 bits (65), Expect = 4.1
Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 61 YLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVK 92
+ FQ + + T+G+++
Sbjct: 121 VIDGSNTGG---------FQRTGLVATDGHLE 143
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 27.2 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 370 GFVRKRKAEEML--ASQVKGTFLLRFSDSELG 399
G + ++ AE L +GTFL+R S++ G
Sbjct: 10 GKLGRKDAERQLLSFGNPRGTFLIRESETTKG 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 5.4
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 28/62 (45%)
Query: 263 PGRSPFVVPDKRPWKMIAD----VLMMKFES-----------ATGRTLDAENLNFLAEKA 307
P ++ + I V M+ S AT E++ +
Sbjct: 1070 PVQNDILQE-----SFINTMSAWVNMLLISSSGPIKTPVGACATS----VESV----DIG 1116
Query: 308 FR 309
Sbjct: 1117 VE 1118
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain,
RNA- binding, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 104
Score = 26.8 bits (59), Expect = 5.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 204 TESVMDEKFSLYFSSTFSIGGGELV 228
+V DE +LYF + GGG ++
Sbjct: 17 PPAVPDELLTLYFENRRRSGGGPVL 41
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 27.5 bits (61), Expect = 5.9
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 358 HLKNVWTDGHIMGFVRKRKAEEMLASQVK------GTFLLRFSDSELGGITI 403
H W + + AE++L GTFL+R S++ T+
Sbjct: 19 HFGEKWFHKKVE---SRTSAEKLLQEYCAETGAKDGTFLVRESETFPNDYTL 67
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 28.4 bits (63), Expect = 6.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 370 GFVRKRKAEEML--ASQVKGTFLLRFSDSELGGITI 403
G + + +AEE L A G FLLR LGG +
Sbjct: 13 GSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVL 48
Score = 28.4 bits (63), Expect = 7.5
Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 18/72 (25%)
Query: 1 MLASQVKGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLAD--------- 51
LA G FLLR LGG ++ + F I +
Sbjct: 25 KLAGMADGLFLLRQCLRSLGGYVLSLV-HDVRF--------HHFPIERQLNGTYAIAGGK 75
Query: 52 RISDLPHLVYLY 63
L Y
Sbjct: 76 AHCGPAELCEFY 87
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 27.0 bits (60), Expect = 6.1
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 9/61 (14%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELG-GITIAWKGGP------EKRGTVSVMDEKF 422
G + + + E+L G FL+R S + +++ W G P + E F
Sbjct: 21 GAIPRAEVAELLVHS--GDFLVRESQGKQEYVLSVLWDGLPRHFIIQSLDNLYRLEGEGF 78
Query: 423 S 423
Sbjct: 79 P 79
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 633
Score = 28.4 bits (63), Expect = 6.2
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 9/32 (28%)
Query: 61 YLYPDKPKDQAFSKYYTPFQDSQPMGTNGYVK 92
+ FQ + + T+G V+
Sbjct: 126 VIDGSNVSG---------FQRTAIIATDGKVE 148
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 26.8 bits (60), Expect = 6.5
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 21/55 (38%)
Query: 346 DWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK-GTFLLRFSDSELG 399
+W+Y +TR +AE L + G FL+R S+S
Sbjct: 6 EWYYG--NVTRH------------------QAECALNERGVEGDFLIRDSESSPS 40
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 27.0 bits (59), Expect = 7.1
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 373 RKRKAEEMLASQVKGTFLLRFSDSELGGITIAWKGGPEK 411
R KA G + +R S ++ G + + W K
Sbjct: 31 RLFKATSPRGEPQDGLYCIRNSSTKSGKVLVVWDETSNK 69
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 26.9 bits (60), Expect = 8.1
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 370 GFVRKRKAEEMLASQVKGTFLLRFSDSELGG--ITIAWKGGP------EKRGTVSVMDEK 421
G + + +A+E+L Q G FL+R S + G +++ G
Sbjct: 22 GAIPRIEAQELLKKQ--GDFLVRESHGKPGEYVLSVYSDGQRRHFIIQYVDNMYRFEGTG 79
Query: 422 FS 423
FS
Sbjct: 80 FS 81
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 27.1 bits (60), Expect = 8.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 370 GFVRKRKAEEML-ASQVKGTFLLRFSDSELGGIT 402
G ++ AEE L S G+FL+R S
Sbjct: 28 GACDRKSAEEALHRSNKDGSFLIRKSSGHDSKQP 61
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 28.1 bits (63), Expect = 8.6
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 29/62 (46%)
Query: 36 LQPFTSKDFQIRNLADRISDLPHL-------VYLYPDKPKDQAFSKYYTPFQDSQPMGTN 88
LQP ++ + L + +YL +P ++P T+
Sbjct: 9 LQPMK--------FSEIRNRLDYFVELGVTHLYL--------------SPVLKARPGSTH 46
Query: 89 GY 90
GY
Sbjct: 47 GY 48
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 27.8 bits (61), Expect = 8.7
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 7 KGTFLLRFSDSELGGITIAWKGDNTEVFMLQPFTSKDFQIRNLADRISDLPHLVYLYPD 65
G+++ R S + LG I + + + P FQ R YL+PD
Sbjct: 266 PGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREG-----FYLFPD 319
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 26.5 bits (59), Expect = 9.3
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 23/65 (35%)
Query: 338 PDRSFTFWDWFYAVMKLTREHLKNVWTDGHIMGFVRKRKAEEMLASQVK---GTFLLRFS 394
D+ + + WF+ L+R KA +++ G FL+R S
Sbjct: 2 SDQPLSGYPWFHG--MLSRL------------------KAAQLVLEGGTGSHGVFLVRQS 41
Query: 395 DSELG 399
++ G
Sbjct: 42 ETRRG 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,748,259
Number of extensions: 465739
Number of successful extensions: 1072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 112
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)