BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15308
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XSZ|A Chain A, The Structure Of Ralf
 pdb|1XSZ|B Chain B, The Structure Of Ralf
          Length = 356

 Score = 32.7 bits (73), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 120 PGVGMHVQISNPDSKIILSRLYSYEGRISFTSH-MPGEHVICLYSNS--TKWVGASQLRV 176
           PG+G +V+ +    K  LS    Y+G I+ T +    +  I +Y+ +  +KW+   Q RV
Sbjct: 237 PGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRV 296

Query: 177 HLDIQVGEHAIDYAQVAQKD 196
            +     + +ID A  A  D
Sbjct: 297 IIQPGQTKESIDLAAKAAAD 316


>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
 pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
           Gamma
          Length = 392

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 43  HISETERKCFIEEIPEETQLLCVVLLAIIPFSYALYFHI----SETERKCFIEEIPEETQ 98
           +I E E+K F+E++  + + L  V L I+ +S  L  H     SE E +  + E  +E++
Sbjct: 224 YIGEEEKKIFLEKLKRDVEFL--VQLKIMDYSLLLGIHDIIRGSEPEEEAPVRE--DESE 279

Query: 99  VIINYKTELFDTRTGGYMQSSPGVGMHVQISNP 131
           V  +          G Y  S  G+G ++    P
Sbjct: 280 VDGDCSLTGPPALVGSYGTSPEGIGGYIHSHRP 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,505,457
Number of Sequences: 62578
Number of extensions: 276315
Number of successful extensions: 440
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 3
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)