RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15308
         (270 letters)



>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD.  Members of
           this family are implicated in bringing cargo forward
           from the ER and binding to coat proteins by their
           cytoplasmic domains. This domain corresponds closely to
           the beta-strand rich GOLD domain described in. The GOLD
           domain is always found combined with lipid- or
           membrane-association domains.
          Length = 178

 Score =  178 bits (455), Expect = 1e-56
 Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 16/193 (8%)

Query: 76  ALYFHISETERKCFIEEIPEETQVIINYKTELFDTRTGGYMQSSPGVGMHVQISNPDSKI 135
           AL F +   E++CF EE+P+ T V  +Y+              +  +   +   + +  +
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGG---------NLDIDFTITDPDGNGNV 51

Query: 136 ILSRLYSY-EGRISFTSHMPGEHVICLYSNSTKWVGASQLRVHLDIQVGEHAIDYAQVAQ 194
           I S+      G+ SFT+   GE+  C  ++ + +   S   V  DI+VGE A D   +A+
Sbjct: 52  IYSKEDRKSGGKFSFTATESGEYKFCFSNSFSTF---SSKTVSFDIKVGEEAKD---IAK 105

Query: 195 KDKLSELQLRVRQLLDQCDQITKEQNYQRYREERFRATSESTNQRVFWWSLAQLGILVCM 254
           K+KL  L+  +++L DQ + I +EQ Y R RE R R T+ESTN RV WWS+ Q+ +L+ +
Sbjct: 106 KEKLDPLEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGV 165

Query: 255 GVWQMRHLKSFFE 267
            V Q+ +LK FFE
Sbjct: 166 SVLQVYYLKRFFE 178


>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
           bacterial type.  SMC (structural maintenance of
           chromosomes) proteins bind DNA and act in organizing and
           segregating chromosomes for partition. SMC proteins are
           found in bacteria, archaea, and eukaryotes. This family
           represents the SMC protein of most bacteria. The smc
           gene is often associated with scpB (TIGR00281) and scpA
           genes, where scp stands for segregation and condensation
           protein. SMC was shown (in Caulobacter crescentus) to be
           induced early in S phase but present and bound to DNA
           throughout the cell cycle [Cellular processes, Cell
           division, DNA metabolism, Chromosome-associated
           proteins].
          Length = 1179

 Score = 28.1 bits (63), Expect = 6.0
 Identities = 11/57 (19%), Positives = 27/57 (47%)

Query: 184 EHAIDYAQVAQKDKLSELQLRVRQLLDQCDQITKEQNYQRYREERFRATSESTNQRV 240
              ++ A    + +L EL+  + QL  + ++++++ +  R    R  A  E   +R+
Sbjct: 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749


>gnl|CDD|146353 pfam03673, UPF0128, Uncharacterized protein family (UPF0128).  The
           members of this family are about 240 amino acids in
           length. The proteins are as yet uncharacterized.
          Length = 221

 Score = 27.5 bits (61), Expect = 6.5
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 200 ELQLRVRQLLDQCDQITKEQNYQRYREERFRATSESTNQRVFWWSL 245
           EL    R+ L +  ++ KE  + R     F  T +  ++    W L
Sbjct: 154 ELPPVARRFLREARKVEKEMGFGRVAFAYFGETKDKEHRYRLSWLL 199


>gnl|CDD|193185 pfam12709, Kinetocho_Slk19, Central kinetochore-associated.  This
           is a family of proteins integrally involved in the
           central kinetochore. Slk19 is a yeast member and it may
           play an important role in the timing of nuclear
           migration. It may also participate, directly or
           indirectly, in the maintenance of centromeric tensile
           strength during mitotic stagnation, for instance during
           activation of checkpoint controls, when cells need to
           preserve nuclear integrity until cell cycle progression
           can be resumed.
          Length = 87

 Score = 26.2 bits (58), Expect = 6.6
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 195 KDKLSELQLRVRQLLDQCDQITKEQNYQRYREERFRATSES 235
           + KL EL+L  + L  + +Q+ K+ + +  R+E+       
Sbjct: 48  QKKLDELELENKALKQEIEQLKKQLDTE--RKEKQELLKLL 86


>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
          Length = 497

 Score = 27.9 bits (62), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 23 SRLLCVVLLAVIPFSYALYFHISET 47
          S L  ++LL  +PF Y  Y  ISE+
Sbjct: 52 SLLRALILLLSVPFVYFTYLFISES 76


>gnl|CDD|221039 pfam11234, DUF3036, Protein of unknown function (DUF3036).  Some
          members in this family of proteins are annotated as
          yoaS. Currently no function is known.
          Length = 155

 Score = 26.8 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 15 NPDSKIILSRLLCVVLLAVIPFSYALY 41
           P+   +L  +L  V L  IPF  ALY
Sbjct: 38 GPEIAYLLYPVLLGVYLGAIPFYVALY 64


>gnl|CDD|225020 COG2109, BtuR, ATP:corrinoid adenosyltransferase [Coenzyme
           metabolism].
          Length = 198

 Score = 27.2 bits (61), Expect = 8.5
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 73  FSYALYFH-ISETERKCFIEEIPEETQVII---NYKTELFD 109
            +YAL +  +   E    ++  PE T VII       EL +
Sbjct: 131 LNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,631,871
Number of extensions: 1281853
Number of successful extensions: 1293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1288
Number of HSP's successfully gapped: 28
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)