RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15308
         (270 letters)



>d1xsza2 d.129.9.1 (A:198-354) RalF, C-terminal domain {Legionella
           pneumophila [TaxId: 446]}
          Length = 157

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 120 PGVGMHVQISNPDSKIILSRLYSYEGRISFTSHMPGEHV-ICLYSNS--TKWVGASQLRV 176
           PG+G +V+ +    K  LS    Y+G I+ T +       I +Y+ +  +KW+   Q RV
Sbjct: 38  PGIGDNVKTTVDQPKSWLSFFTGYKGTITLTDNKTSAQATIQVYTPNIFSKWLFGEQPRV 97

Query: 177 HLDIQVGEHAIDYA 190
            +     + +ID A
Sbjct: 98  IIQPGQTKESIDLA 111


>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog
           (Xenopus laevis) [TaxId: 8355]}
          Length = 102

 Score = 26.0 bits (57), Expect = 2.5
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 17/116 (14%)

Query: 113 GGYMQSSPGVGMHVQISNPD-SKIILSRLYSYEGRISFTSHMPGEHVICLYSNSTKWVGA 171
           GGYM  +    M  Q +NP  S+           R+    +   E     Y +  ++V  
Sbjct: 2   GGYMLGNAVGRMSYQFNNPMESRYYNDYYNQMPNRVYRPMYRGEE-----YVSEDRFV-- 54

Query: 172 SQLRVHLDIQVGEHAIDYAQVAQKDKLSELQLRVRQLLDQCDQITKEQNYQRYREE 227
              R   ++ V E+ I  A+     +L++L   V+       QI +E     YR  
Sbjct: 55  ---RDCYNMSVTEYIIKPAEGKNNSELNQLDTTVKS------QIIREMCITEYRRG 101


>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter
           pylori [TaxId: 210]}
          Length = 77

 Score = 24.3 bits (52), Expect = 6.3
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 185 HAIDYAQVAQKDKLSELQLRVRQLLDQCDQITKEQ 219
           H ++  + A++DK SE+   ++   ++ D+  +EQ
Sbjct: 34  HNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQ 68


>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 278

 Score = 25.6 bits (56), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 130 NPDSKIILSRLYSYEGRISFTSHMPG 155
           + +  +  SR  S +GR  FT H+ G
Sbjct: 66  DFEEILFASRHSSKDGRKIFTVHVSG 91


>d1j34b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Habu snake
           (Trimeresurus flavoviridis) [TaxId: 88087]}
          Length = 123

 Score = 24.7 bits (52), Expect = 8.6
 Identities = 4/45 (8%), Positives = 14/45 (31%)

Query: 124 MHVQISNPDSKIILSRLYSYEGRISFTSHMPGEHVICLYSNSTKW 168
               +   +     +  +S    + + +     + +   S + KW
Sbjct: 62  SIFWMGLSNVWNQCNWQWSNAAMLRYKAWAEESYCVYFKSTNNKW 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,010,808
Number of extensions: 45306
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 8
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)