BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15309
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
 pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
          Length = 175

 Score = 31.6 bits (70), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 35  WVFRSMELTKAYDQLRSLSHPEVIKYNVLESEETASIIH---------EFSLEL----SL 81
           W      L K Y QL++  HP++ +    +S       H         ++ L+L     L
Sbjct: 20  WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDL 79

Query: 82  PKEQFSLELSLPKEQIRLQVLDILNEIG 109
            +EQ S E++    Q+ L+VLDI +E+ 
Sbjct: 80  TQEQTSNEVTTSDPQLLLKVLDIHDELS 107


>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
           Clone
 pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
           Clone
          Length = 181

 Score = 31.6 bits (70), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 35  WVFRSMELTKAYDQLRSLSHPEVIKYNVLESEETASIIH---------EFSLEL----SL 81
           W      L K Y QL++  HP++ +    +S       H         ++ L+L     L
Sbjct: 28  WTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDL 87

Query: 82  PKEQFSLELSLPKEQIRLQVLDILNEIG 109
            +EQ S E++    Q+ L+VLDI +E+ 
Sbjct: 88  TQEQTSNEVTTSDPQLLLKVLDIHDELS 115


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 30.8 bits (68), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 6   SNSNKPS----GGRSLKHFVDILEPRRHGSDLAWVFRSMELTKAYDQLRSLSH 54
           +NSN P      GR+LK   D+LE       +A   RS+ L +  DQ   LSH
Sbjct: 53  ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH 105


>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
           Methyltranferase
 pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
           Methyltranferase
          Length = 215

 Score = 26.9 bits (58), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 79  LSLPKEQFSLELSLPKEQIRLQVLDILNEIGYGRSLTVVRWLGLL 123
           L +P+E+F     LP+       +D   EIGYG++++ +  +G++
Sbjct: 30  LKVPREEF-----LPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,554,255
Number of Sequences: 62578
Number of extensions: 293980
Number of successful extensions: 736
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 8
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)