RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15309
(258 letters)
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 155 bits (393), Expect = 5e-47
Identities = 60/122 (49%), Positives = 82/122 (67%), Gaps = 3/122 (2%)
Query: 135 VYVNEEQLNKLRKQWGDN-PVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMF 193
V VNE QL +LRK + PV+ LP+HRSY DF+L++ + F + +P +AAG + +
Sbjct: 4 VQVNEGQLERLRKAAQEGHPVVLLPTHRSYLDFLLLSFILFSLGLPLPHIAAGENLNIP- 62
Query: 194 LMGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYP 253
++G +LR A+F+RR++G D LY V YVQ L+ + PLEFFIEGTRSRTGK L P
Sbjct: 63 ILGTLLRRLGAFFIRRSFGKDPLYRAVLQEYVQELLKN-GQPLEFFIEGTRSRTGKLLPP 121
Query: 254 KL 255
KL
Sbjct: 122 KL 123
>gnl|CDD|240389 PTZ00374, PTZ00374, dihydroxyacetone phosphate acyltransferase;
Provisional.
Length = 1108
Score = 119 bits (301), Expect = 1e-30
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 11/168 (6%)
Query: 94 KEQIRLQVLDILNEIGYGRSLTVVRWLGLLLVKILKKTRTSVYVNE---EQLNKLRKQWG 150
++ + + IL G + R GL++ +IL + V +N E+L++
Sbjct: 569 EKDVEARAKAILRTCGDNLNHVQCRLFGLMVRRILFRLYDRVSLNSGAFERLHRYVAM-- 626
Query: 151 DNP---VLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFM 207
P V+ LP HRSY DFI+M L + +P V AG DF M + ++RG A+FM
Sbjct: 627 --PRVAVVLLPLHRSYIDFIIMTYLLAVMGLPLPHVCAGDDFLRMGPIATLMRGSGAFFM 684
Query: 208 RRTYGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPKL 255
RR++ D LY +F YV+ LV PLEFFIEGTRSRTGK++ PKL
Sbjct: 685 RRSFRDDPLYAALFKEYVRHLVLR-RRPLEFFIEGTRSRTGKTMAPKL 731
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 105 bits (264), Expect = 8e-26
Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 51 SLSHPEVIKYNVLESEETASIIHEFSLELSLPKEQFSLELSLPKEQIRLQVLDILNEIGY 110
L ++ +L S I + E S +S+ K Q ++ EI
Sbjct: 208 RLPSRRLLFNKLLASAAIRKAIAD---------EARSKGISVEKAQKMAD--ELATEIAA 256
Query: 111 GRSLTVVRWLGLLLVKILKKTRTSVYVNEEQLNKLRKQWGDNPVLFLPSHRSYGDFILMA 170
S ++R L +L + R + + R + ++++P HRS+ D++L++
Sbjct: 257 DFSYELIRVLDRILSRGWN--RLYQGDEVQNAERRRLALDGHEIVYVPCHRSHIDYLLLS 314
Query: 171 LLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVT 230
+ +H + P +AAG++ + + MG + R A+F+RRT+ + LY VF Y+ L +
Sbjct: 315 YVLYHNGLVPPHIAAGINL-NFWPMGPIFRRGGAFFIRRTFKGNPLYSTVFREYLGELFS 373
Query: 231 SCVAPLEFFIEGTRSRTGKSLYPKL 255
+ LE+FIEG RSRTG+ L PK
Sbjct: 374 RGYS-LEYFIEGGRSRTGRLLPPKT 397
>gnl|CDD|234317 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members
of this protein family are PlsB, glycerol-3-phosphate
O-acyltransferase, present in E. coli and numerous
related species. In many bacteria, PlsB is not found,
and appears to be replaced by a two enzyme system for
1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
system [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 799
Score = 102 bits (257), Expect = 8e-25
Identities = 51/164 (31%), Positives = 95/164 (57%), Gaps = 5/164 (3%)
Query: 92 LPKEQIRLQVLDILNEIGYGRSLTVVRWLGLLLVKILKKTRTSVYV-NEEQLNKLRKQWG 150
+ +E+ R + L L+EI S +++R+L L + K + V N +++ KL +
Sbjct: 233 ISEEKARKRALKYLDEIAADYSYSLIRFLDRFLTWLWNKLYQGINVNNADRVRKLAQ--K 290
Query: 151 DNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRT 210
+ ++++P HRS+ D++L++ + +H + P +AAG++ + + G + R A+F+RR+
Sbjct: 291 GHEIIYVPCHRSHMDYLLLSYVLYHEGLVPPHIAAGINL-NFWPAGPIFRRGGAFFIRRS 349
Query: 211 YGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPK 254
+ +KLY VF Y+ L +E+F+EG RSRTG+ L PK
Sbjct: 350 FKGNKLYSAVFREYLHELFAKGY-SVEYFVEGGRSRTGRLLPPK 392
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 93.8 bits (234), Expect = 9e-22
Identities = 47/164 (28%), Positives = 90/164 (54%), Gaps = 5/164 (3%)
Query: 92 LPKEQIRLQVLDILNEIGYGRSLTVVRWLGLLLVKILKKTRTSVYV-NEEQLNKLRKQWG 150
+ E+ R + ++EI S + +R L + + + V N E++ +L +
Sbjct: 243 ISHEKARQNAIAYMDEIAADYSYSAIRLADRFLTWLWNRLYQGINVHNAERVRQLAQD-- 300
Query: 151 DNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRT 210
+ ++++P HRS+ D++L++ + +H + P +AAG++ + + G + R A+F+RR+
Sbjct: 301 GHEIVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGINL-NFWPAGPIFRRGGAFFIRRS 359
Query: 211 YGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPK 254
+ +KLY VF Y+ L +E+F+EG RSRTG+ L PK
Sbjct: 360 FKGNKLYSTVFREYLGELFARG-YSVEYFVEGGRSRTGRLLQPK 402
>gnl|CDD|179567 PRK03355, PRK03355, glycerol-3-phosphate acyltransferase;
Validated.
Length = 783
Score = 74.7 bits (184), Expect = 3e-15
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 137 VNEEQLNKLRKQWGDNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMG 196
+E +L LR ++P + L SHRSY D +++ + + V G++ S MG
Sbjct: 252 YDEYELAALRALLEEHPAVLLFSHRSYIDGLVVPVAMQENRLPPVHVFGGINL-SFGPMG 310
Query: 197 NMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPKL 255
++R F+RR G D LY V YV LV L ++IEGTRSRTGK L PKL
Sbjct: 311 PIMRRSGMIFIRRNIGDDPLYKYVLREYVGYLVEKRF-NLSWYIEGTRSRTGKLLPPKL 368
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 63.9 bits (156), Expect = 4e-13
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 154 VLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRTYGT 213
L + +H+S+ D ++++ L + VA F+ +G +LR A F+ R
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPL-LGWLLRLLGAIFIDR--SN 57
Query: 214 DKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPK 254
+ V+ L L F EGTRSR GK L K
Sbjct: 58 GRKARAALREAVELLKEGE--WLLIFPEGTRSRPGKLLPFK 96
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 51.5 bits (124), Expect = 1e-08
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 151 DNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRT 210
P + + +H+SY D +L++LL A + ++ L+G ++R F+ R
Sbjct: 13 GGPAIVVANHQSYLDPLLLSLLLPKR-GRPLVFVAKDELLNLPLLGWLMRLLGCIFIDR- 70
Query: 211 YGTDKLYWRVF-DVYVQALVTSCVAPLEFFIEGTRSRTGKSLYPK 254
+ + V+ L + F EGTRSR G+ L K
Sbjct: 71 --KNAKDAANTLEYLVELLREGE--LVLIFPEGTRSRGGELLPFK 111
>gnl|CDD|237022 PRK11915, PRK11915, glycerol-3-phosphate acyltransferase; Reviewed.
Length = 621
Score = 47.6 bits (113), Expect = 3e-06
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 135 VYVNEEQLNKLRKQWGDNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFL 194
V V+E+Q+ +LRK + F SHRSY D +L+ + N P + G + F
Sbjct: 98 VLVDEDQITQLRKLDRKATLAFAFSHRSYLDGMLLPEV-ILANRLSPALTFGGANLNFFP 156
Query: 195 MGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRSRTGK 249
MG + A F+RR +Y V Y LV + L + IEG R+RTGK
Sbjct: 157 MGAWAKRTGAIFIRRQTKDIPVYRFVLRAYAAQLVQN-HVNLTWSIEGGRTRTGK 210
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 44.9 bits (106), Expect = 1e-05
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 20/147 (13%)
Query: 111 GRSLTVVRWLGLLLVKILKKTRTSVYV-NEEQLNKLRKQWGDNPVLFLPSHRSYGDFILM 169
R + RWL L++ +L V V E L K P L + +H+S+ D +L+
Sbjct: 28 LRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENLPK------GGPALVVANHQSFLDPLLL 81
Query: 170 ALLCFHYNIEIPCVAAGMDFHSMF---LMGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQ 226
+L + VA +F L+G +LR A + R D+
Sbjct: 82 SLA-LPRRGPVRFVAK----KELFKVPLLGWLLRLLGAIPVDRENPDDETLRAAVARLKA 136
Query: 227 ALVTSCVAPLEFFIEGTRSRTGKSLYP 253
+ + P EGTRSR G+ L P
Sbjct: 137 GGRSLVIFP-----EGTRSRGGEELLP 158
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 126 KILKKTRTSVYVNEEQLNKLRKQWGDNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAA 185
+L V + + G PVLF+ +H S+ D +++ LL +
Sbjct: 3 YLLLNFFGFVRLEVKGPPPPP---GGGPVLFVSNHSSWWDGLILFLLL-ERGLRRDVYGL 58
Query: 186 GMDFHSMFLMGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVTSCVAPLEFFIEGTRS 245
+ A+ + R YV L++ + + F EGTR+
Sbjct: 59 MDEELLERYPF--FTRLGAFSVDR---DSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRT 113
Query: 246 R 246
R
Sbjct: 114 R 114
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 34.2 bits (79), Expect = 0.030
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 151 DNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMFLMGNMLRGCSAYFMRRT 210
PV+ + +H+SY D +++ A + + +G +LR A + R
Sbjct: 23 KGPVIIVANHQSYLDPLVLGAALPRP----IRFVAKKELFKIPFLGWLLRLLGAIPIDRG 78
Query: 211 YGTDKLYWRVFDVYVQALVTSCVAPLE------FFIEGTRSRTGKSLYPK 254
G + + + L+ F EGTRSR G+ L K
Sbjct: 79 NGRS----------AREALREAIEALKEGESVVIFPEGTRSRDGELLPFK 118
>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic
reticulum. Malectin is a membrane-anchored protein of
the endoplasmic reticulum that recognises and binds
Glc2-N-glycan. It carries a signal peptide from residues
1-26, a C-terminal transmembrane helix from residues
255-274, and a highly conserved central part of
approximately 190 residues followed by an acidic,
glutamate-rich region. Carbohydrate-binding is mediated
by the four aromatic residues, Y67, Y89, Y116, and F117
and the aspartate at D186. NMR-based ligand-screening
studies has shown binding of the protein to maltose and
related oligosaccharides, on the basis of which the
protein has been designated "malectin", and its
endogenous ligand is found to be Glc2-high-mannose
N-glycan.
Length = 164
Score = 30.3 bits (69), Expect = 0.61
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 211 YGTDKLYWRVFDVYVQ 226
+G D L RVFDVYVQ
Sbjct: 86 FGEDGLGRRVFDVYVQ 101
>gnl|CDD|197348 cd10040, Reelin_repeat_4_subrepeat_1, N-terminal subrepeat of
tandem repeat unit 4 of reelin and related proteins.
Reelin is an extracellular glycoprotein involved in
neuronal development, specifically in the brain cortex.
It contains 8 tandemly repeated units, each of which is
composed of two highly similar subrepeats and a central
EGF domain. This model characterizes the N-terminal
subrepeat, which directly contacts the C-terminal
subrepeat and the EGF domain in a compact arrangement.
Consecutive reelin repeat units are packed together to
form an overall rod-like molecular structure. Reelin
repeats 5 and 6 are reported to interact with neuronal
receptors, the apolipoprotein E receptor 2 (ApoER2) and
the very-low-density lipoprotein receptor (VLDLR),
triggering a signaling cascade upon binding and
subsequent tyrosine phosphorylation of the cytoplasmic
disabled-1 (Dab1).
Length = 170
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 172 LCFHYNIEIPCVAAGMDFH---SMFLMGNMLRGCS 203
L F NI P A DFH S FL + GCS
Sbjct: 35 LMFTENIGKPRYAETWDFHVSASTFLQFELSMGCS 69
>gnl|CDD|182589 PRK10614, PRK10614, multidrug efflux system subunit MdtC;
Provisional.
Length = 1025
Score = 29.3 bits (66), Expect = 2.4
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 9/49 (18%)
Query: 88 LELSLPKEQIRLQ----VLDILNEIGYGRSLTVV----RWLGLLLVKIL 128
L+ S P+EQ RL+ +L L + GYGRSL V RW+G++L+ +
Sbjct: 490 LKSSKPREQKRLRGFGRMLVALQQ-GYGRSLKWVLNHTRWVGVVLLGTI 537
>gnl|CDD|224080 COG1158, Rho, Transcription termination factor [Transcription].
Length = 422
Score = 28.8 bits (65), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 82 PKEQFSLELSLPKEQIRLQVLDILNEIGYG-RSLTV 116
P E+ LE + +V+D+++ IG G R L V
Sbjct: 144 PNERLKLERENGSTDLSTRVIDLISPIGKGQRGLIV 179
>gnl|CDD|204996 pfam12651, RHH_3, Ribbon-helix-helix domain. This short bacterial
protein contains a ribbon-helix-helix domain that is
likely to be DNA-binding.
Length = 44
Score = 26.0 bits (58), Expect = 2.7
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 129 KKTRTSVYVNEEQLNKLRK 147
+TR S +++E L KL++
Sbjct: 1 NRTRFSTSIDKELLEKLKE 19
>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional.
Length = 239
Score = 28.4 bits (63), Expect = 3.3
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 28 RHGSDLAWVFRSME-LTKAYDQLRSLSHPE--VIKYNVLESEE 67
G+ + V R + L K YD + HPE I+++++ +EE
Sbjct: 28 AAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEE 70
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 27.8 bits (63), Expect = 5.2
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 49 LRSLSHPEVIK-YNVLESEETASIIHEFSLELSLPK--EQFSLELSLPKEQIRLQVLDIL 105
L+ L HP ++K +V+ +E ++ E+ ++ L K ++ LS I+ + +L
Sbjct: 52 LKELKHPNIVKLLDVIHTERKLYLVFEY-CDMDLKKYLDKRPGPLSPN--LIKSIMYQLL 108
Query: 106 NEIGY 110
+ Y
Sbjct: 109 RGLAY 113
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division
control protein 7-like Protein Serine/Threonine
Kinases. Serine/threonine kinases (STKs), (Cdc7)-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Cdc7-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
include Schizosaccharomyces pombe Cdc7, Saccharomyces
cerevisiae Cdc15, Arabidopsis thaliana
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) epsilon, and related proteins. MAPKKKs
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
Fission yeast Cdc7 is essential for cell division by
playing a key role in the initiation of septum
formation and cytokinesis. Budding yeast Cdc15
functions to coordinate mitotic exit with cytokinesis.
Arabidopsis MAPKKK epsilon is required for pollen
development in the plasma membrane.
Length = 254
Score = 27.6 bits (62), Expect = 5.3
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 47 DQLRSLSHPEVIKY-NVLESEETASIIHEFSLELSL 81
D L++L HP ++KY +E+ ++ II E++ SL
Sbjct: 51 DLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSL 86
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 27.6 bits (61), Expect = 6.7
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 16/88 (18%)
Query: 21 VDILEPRRHGSDLAWVFRSMELTKAYDQLRSLSHPEVIKYNVLESEETAS---IIHEF-- 75
V L+P G+ +A + + +E+ LR+L H ++KY + +E+ + +I EF
Sbjct: 38 VKSLKPESGGNHIADLKKEIEI------LRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 91
Query: 76 --SLELSLPKEQFSLELSLPKEQIRLQV 101
SL+ LP+ + + L K+Q++ V
Sbjct: 92 SGSLKEYLPRNKNKINL---KQQLKYAV 116
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 26.8 bits (60), Expect = 8.4
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 29/101 (28%)
Query: 160 HRSYGDFILMALLCFHYNIEIPCVAAGMDFHSMF--LMGNMLRGCSAYFMRRTYGTDKLY 217
H S DF+L L F ++I + HS+F +G +R + R+
Sbjct: 29 HTSNWDFVLGLLAAFALGLKISFLGK----HSLFKPPLGPFMRWLGGIPVDRSRAGG--- 81
Query: 218 WRVFDVYVQALVTS---------CVAPLEFFIEGTRSRTGK 249
V+ +V +AP EGTRS+ K
Sbjct: 82 ------LVEQVVEEFRRREEFVLAIAP-----EGTRSKVDK 111
>gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 27.4 bits (61), Expect = 9.6
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 52 LSHPEVIKYNVLESEETASIIHEFSL-ELSLPKE-QFSLELSLPKEQIRLQVLDILNEIG 109
L PE+ +Y+ + +E + + EL +P++ + L+ +E + +QVL + +
Sbjct: 173 LEDPELTRYDEVTAETDE--VERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLL 230
Query: 110 YGRSLTVV 117
G +L VV
Sbjct: 231 EGENLLVV 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,190,241
Number of extensions: 1251010
Number of successful extensions: 1109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 32
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)