RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15309
(258 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 34/252 (13%), Positives = 65/252 (25%), Gaps = 87/252 (34%)
Query: 49 LRSLSHPEVIKYNVLE-SEETASIIHEFSLELSLPKEQFSLELSLPKEQIRLQVLDILNE 107
R L + + LE + + +L +EQF+ L P E +E
Sbjct: 6 TRPL----TLSHGSLEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAAD-----DE 53
Query: 108 IGYGRSLTVVRWLGLLLVKILKKTRTSVYVNEEQLNKLRKQWGDNPVLFLPSHRSYGDFI 167
L V ++LG YV+ + + +
Sbjct: 54 PTTPAEL-VGKFLG--------------YVSSL------VEPSKVG--------QFDQVL 84
Query: 168 LMALLCFHYNI----EIPCVAAGMDFHSMFLMGNMLRGCSAYF-----MRRTY------- 211
+ L F +I +AA + + + Y +R +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 212 -------------------GTDKLYWR----VFDVY---VQALVTSCVAPLEFFIEGTRS 245
G Y+ ++ Y V L+ L I T
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 246 RTGKSLYPK-LD 256
+ ++ + L+
Sbjct: 205 A--EKVFTQGLN 214
Score = 33.1 bits (75), Expect = 0.11
Identities = 42/263 (15%), Positives = 74/263 (28%), Gaps = 114/263 (43%)
Query: 26 PRRHGSDLAWVFRSMELTKA--------------Y-DQLRSLSHPEVIKYNVLESEETAS 70
++ S L FR++ A Y ++LR L Y+VL
Sbjct: 138 DKKSNSAL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT----YHVL----VGD 186
Query: 71 IIHEFSLELSLPKEQFSLELSLPKEQIRLQVLDILNEIGYGRSLTVVRWLGLLLVKILKK 130
+I + LS L + + + + + + L ++ WL
Sbjct: 187 LIKFSAETLS----------ELIRTTLDAEKV-------FTQGLNILEWL---------- 219
Query: 131 TRTSVYVNEEQLNKLRKQWGDNPVLFLPSHRSYGDFILMALLCFHYNIEIPCVAAGMDFH 190
S +++ L + P+ P I + L HY + G
Sbjct: 220 ENPSNTPDKDYLLSI-------PISC-P-------LIGVIQLA-HY--VVTAKLLGFTPG 261
Query: 191 SMFLMGNMLRGCSAYFMRRTYGTDKLYWRVFDVYVQALVTS-CVAP-------------- 235
+ + L+G + + Q LVT+ +A
Sbjct: 262 ELR---SYLKGAT-------------------GHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 236 LE--FFIEGTRSRTGKSLYPKLD 256
+ FFI G R YP
Sbjct: 300 ITVLFFI-GVRC---YEAYPNTS 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.004
Identities = 33/251 (13%), Positives = 77/251 (30%), Gaps = 83/251 (33%)
Query: 12 SGGRSLKHFV-DILEPRRHGSDLAWVFRSME--------LTKAYDQLRSLSH---PEVIK 59
++ FV ++L + ++ ++ +T+ Y + R + K
Sbjct: 74 KQEEMVQKFVEEVLRI-----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 60 YNVLESEETASIIHEFSLELSLPKEQFSLELSLPKEQIR--LQVLDILNEI------GYG 111
YNV + Q P ++R L L + G G
Sbjct: 129 YNV-------------------SRLQ-------PYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 112 RSLTVVRWLGLLLVKILKKTRTSVYVNEEQLNKLRKQWGDNPVLFLP-SHRSYGDFILMA 170
++ W+ L V ++ + K+ D + +L + + + +L
Sbjct: 163 KT-----WVAL-----------DVCLSYKVQCKM-----DFKIFWLNLKNCNSPETVLEM 201
Query: 171 LLCFHYNIEIPCVAAGMDFHSMFLMGNMLRG-CSAYFMRRTYGT---------DKLYWRV 220
L Y I+ + ++ L + ++ + Y + W
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 221 FDVYVQALVTS 231
F++ + L+T+
Sbjct: 262 FNLSCKILLTT 272
Score = 34.1 bits (77), Expect = 0.055
Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 93/234 (39%)
Query: 15 RSLKHFVDILEP---RRHGSDLAWVFRSMELTKAYDQLRSLSHPEV-IKYNVLE------ 64
++ +++LEP R+ L+ VF P I +L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLS-VFP----------------PSAHIPTILLSLIWFDV 399
Query: 65 -SEETASI--------------------IHEFSLELSLPK-----------EQFSLELSL 92
+ + I LEL + + +++ +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 93 PKEQIRLQVLD--ILNEIGY-------------GRSLTV-VRWLG--LLLVKILKKTRTS 134
+ + LD + IG+ R + + R+L + S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 135 VYVNEEQLNKLRKQWGDN-PVL---------FLPSH-----RS-YGDFILMALL 172
+ +QL + DN P FLP S Y D + +AL+
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 29.7 bits (67), Expect = 0.88
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 15/49 (30%)
Query: 110 YGRSLT------VVRWLGLLLVKILKKTRTSVYVNEEQLNKLRKQWGDN 152
Y SLT V W + + + + NK++K N
Sbjct: 184 YTGSLTTPPCTEEVMWN------LSTEPLP---LTVQGYNKVKKIIKYN 223
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 28.5 bits (64), Expect = 2.1
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 90 LSLPKEQIRLQVLDILNEIGYGRSLTVVRWLGLLL-----VKILKKTRTSVYVNEEQLNK 144
L L ++ + + ++ +IG GR V W+G VK+ T + + E ++ +
Sbjct: 27 LPLLVQRTIAKQIQMVKQIGKGRYGEV--WMGKWRGEKVAVKVFFTTEEASWFRETEIYQ 84
Query: 145 LRKQWGDNPVLFL 157
+N + F+
Sbjct: 85 TVLMRHENILGFI 97
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 28.0 bits (63), Expect = 2.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 94 KEQIRLQVLDILNEIGYGRSLTVVR 118
KEQ R + + L+ +R
Sbjct: 83 KEQARQKAISYLSSRPATSLPLALR 107
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain; 1.98A
{Staphylococcus aureus}
Length = 285
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 170 ALLCFHYNIE-IPCVAAGMDFHSMFLMGNM 198
A++ ++ + A MD F MG+M
Sbjct: 110 AVVTGTAQLDGMKFGVAVMDSR--FRMGSM 137
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 27.7 bits (62), Expect = 3.4
Identities = 2/25 (8%), Positives = 6/25 (24%)
Query: 94 KEQIRLQVLDILNEIGYGRSLTVVR 118
+ + V ++ R
Sbjct: 64 EREHAEMVARMIASDRNVHGRAGAR 88
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.24A {Burkholderia xenovorans}
Length = 339
Score = 27.7 bits (62), Expect = 4.4
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 94 KEQIRLQVLDILNEIGYGRSLTVVR 118
+ Q V +L VR
Sbjct: 63 EAQHAELVASLLGSEHDRFGRVGVR 87
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A
{Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Length = 137
Score = 26.9 bits (59), Expect = 4.4
Identities = 9/81 (11%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 39 SMELTKAYDQLRSLSHPEVIKYNVLESEETASIIHEFSLELSLPKEQFSLELSLPKEQIR 98
S + + +++L+ + + + + ++ E + E F +L +
Sbjct: 6 SDDCVQKFNELKLGHQHRYVTFKM--NASNTEVVVEHVGGPNATYEDFKSQLPERDCRYA 63
Query: 99 LQVLDILNEIGYGRSLTVVRW 119
+ + + G +T + W
Sbjct: 64 IFDYEFQVDGGQRNKITFILW 84
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 27.5 bits (62), Expect = 4.5
Identities = 2/23 (8%), Positives = 13/23 (56%)
Query: 122 LLLVKILKKTRTSVYVNEEQLNK 144
L++ ++L + +++ + ++
Sbjct: 40 LIVSRVLGIRKEDLFLKDLGVSP 62
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 27.5 bits (60), Expect = 4.9
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 132 RTSVYVNEEQLNKLRKQWG-DNPVLFLPSHRSYGDFILMALLCFHYNIEIP 181
S N + ++ + V+ + +H++ D +++LL N I
Sbjct: 109 GNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIA 159
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 27.4 bits (60), Expect = 5.0
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 15/46 (32%)
Query: 113 SLT------VVRWLGLLLVKILKKTRTSVYVNEEQLNKLRKQWGDN 152
SLT + W ++ + ++ Q N+ R G
Sbjct: 258 SLTTPPCSEGLLWH------VMTQP---QRISFGQWNRYRLAVGLK 294
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 27.2 bits (61), Expect = 6.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 170 ALLCFHYNIE-IPCVAAGMDFHSMFLMGNM 198
AL+ + +P VAA +F F+ G+M
Sbjct: 107 ALVVMKGTLYGMPVVAAAFEFA--FMGGSM 134
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 26.7 bits (59), Expect = 8.4
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 102 LDILNEIGYGRSLTVVRWLGLLL-----VKILKKTRTSVYVNEEQLNKLRKQWGDNPVLF 156
+ + IG GR V W G VKI + E ++ + +N + F
Sbjct: 44 IVLQESIGKGRFGEV--WRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGF 101
Query: 157 L 157
+
Sbjct: 102 I 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.415
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,902,698
Number of extensions: 223794
Number of successful extensions: 484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 29
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)