RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15309
         (258 letters)



>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
           dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
           griseus) [TaxId: 10029]}
          Length = 378

 Score = 30.9 bits (69), Expect = 0.17
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 154 VLFLPSHRSYG--DFILMALLCFHYNIEIPCVAAGMD 188
            L LP +  +      L + L     ++ P V++ MD
Sbjct: 19  FLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMD 55


>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
           dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
           2336]}
          Length = 330

 Score = 29.7 bits (66), Expect = 0.34
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 154 VLFLPSHRSYG--DFILMALLCFHYNIEIPCVAAGMD 188
           VL +P +      D  +   L     I IP V+A MD
Sbjct: 10  VLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMD 46


>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
           dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
           1314]}
          Length = 365

 Score = 29.6 bits (66), Expect = 0.37
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 154 VLFLP--SHRSYGDFILMALLCFHYNIEIPCVAAGMD 188
           VL +P  SH    +  L   L  +  + IP + A MD
Sbjct: 17  VLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMD 53


>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
           dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 368

 Score = 28.6 bits (63), Expect = 0.76
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 140 EQLNKLRKQWGDNPVLFLP--SHRSYGDFILMALLCFHYNIEIPCVAAGMD 188
           E+L K  K +  + VL +P  +     D  +   +  +  + IP ++A MD
Sbjct: 4   EKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMD 54


>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare
           (Aplysia californica), twk43 [TaxId: 6500]}
          Length = 352

 Score = 28.5 bits (63), Expect = 0.91
 Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 49  LRSLSHPEVIK-YNVLESEETASIIHEFSLELSLPKEQFSLELSLPKEQIRLQVLDILNE 107
           +  L HP++I  ++  E +    +I EF     L     + +  + + ++   +      
Sbjct: 80  MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEG 139

Query: 108 IGYGRSLTVV 117
           + +    ++V
Sbjct: 140 LKHMHEHSIV 149


>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH)
           {Lyme disease spirochete (Borrelia burgdorferi) [TaxId:
           139]}
          Length = 388

 Score = 28.2 bits (62), Expect = 1.2
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 154 VLFLPSHRSYG--DFILMALLCFHYNIEIPCVAAGMD 188
           V  +P   S    +  L   L  + ++ IP +++ MD
Sbjct: 13  VSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMD 49


>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
           kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 49  LRSLSHPEVIK-YNVLESEETASIIHEFSLELSLPKEQFSLELSLPKEQIRLQVLDILNE 107
           +  L HP  +K Y   + +E       ++    L K    +  S  +   R    +I++ 
Sbjct: 62  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSA 120

Query: 108 IGYGRSLTVV 117
           + Y     ++
Sbjct: 121 LEYLHGKGII 130


>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 26.1 bits (57), Expect = 5.0
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 49  LRSLSHPEVIK-YNVLESEETASIIHEF----SLELSLPKEQFSLELSLPKEQIRLQVLD 103
           L  + HP ++   ++ ES     +I +      L   + ++ F       +      +  
Sbjct: 61  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF-----YTERDASRLIFQ 115

Query: 104 ILNEIGYGRSLTVV 117
           +L+ + Y   L +V
Sbjct: 116 VLDAVKYLHDLGIV 129


>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 24.2 bits (52), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 131 TRTSVYVNEEQLNKLRKQWG 150
            R +V ++ EQ N+LR+Q+G
Sbjct: 45  KRMAVILSLEQGNRLREQYG 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 959,384
Number of extensions: 43800
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 16
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.2 bits)