BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15310
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y1U|A Chain A, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|B Chain B, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|C Chain C, Structure Of Unphosphorylated Stat5a
Length = 585
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
NG +LD++Q +CE LAEIIW RQQI+ AE +L + P + ++L +NA
Sbjct: 135 AGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAE---HLCQQLPIPGPVEEMLAEVNA 191
Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
IT +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 192 TITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 242
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 1 MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWK 46
++ L + + L Q R +LA+ ++T L+ Q IL+ EL++WK
Sbjct: 84 LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWK 129
>pdb|1BG1|A Chain A, Transcription Factor Stat3bDNA COMPLEX
Length = 596
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
G N LD ++ + SLAE TRQQIK+ E L+ +S DP +V P L +I
Sbjct: 127 GGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERIV 184
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
+ +L+ S F++E+QP P V+KT +F+ VRLL
Sbjct: 185 ELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLL 226
>pdb|3CWG|A Chain A, Unphosphorylated Mouse Stat3 Core Fragment
pdb|3CWG|B Chain B, Unphosphorylated Mouse Stat3 Core Fragment
Length = 562
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
G N LD ++ + SLAE TRQQIK+ E L+ +S DP +V P L +I
Sbjct: 127 GGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERIV 184
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
+ +L+ S F++E+QP P V+KT +F+ VRLL
Sbjct: 185 ELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLL 226
>pdb|1YVL|A Chain A, Structure Of Unphosphorylated Stat1
pdb|1YVL|B Chain B, Structure Of Unphosphorylated Stat1
Length = 683
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
G N LD +Q + +AE + RQQ+K+ E L+ + DP + L +
Sbjct: 249 GGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRTF 306
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
L+ S+F++E+QP P V+KT +F+ +RLL
Sbjct: 307 SLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLL 348
>pdb|1BF5|A Chain A, Tyrosine Phosphorylated Stat-1DNA COMPLEX
Length = 575
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 134 GARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQIT 193
G N LD +Q + +AE + RQQ+K+ E L+ + DP + L +
Sbjct: 114 GGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRTF 171
Query: 194 QCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLL 227
L+ S+F++E+QP P V+KT +F+ +RLL
Sbjct: 172 SLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLL 213
>pdb|2C2F|A Chain A, Dps From Deinococcus Radiodurans
pdb|2C2U|A Chain A, Dps From Deinococcus Radiodurans
pdb|2F7N|A Chain A, Structure Of D. Radiodurans Dps-1
Length = 207
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 112 KTIQACLTQEMRIVQQNDPVSNGARYNC----------TLDMIQGYCESLAEIIWMTRQQ 161
+T++ TQ +VQ V G R + T DM GY ++ +I WM Q
Sbjct: 141 ETVRDARTQVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGYAATIDKIRWML-QA 199
Query: 162 IKEAERL 168
I + ERL
Sbjct: 200 IMDDERL 206
>pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL
Dehydrogenase From Clostridium Thermocellum
Length = 247
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 131 VSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190
V NG+ + +LD ++ + + + +K E ++N++ +D +D+L N NA
Sbjct: 33 VLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVN-NA 91
Query: 191 QITQCLSHLVTSTFIIEKQPPQVMKTNTR 219
IT+ L S EK V+ TN +
Sbjct: 92 GITRDTLMLKMS----EKDWDDVLNTNLK 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,224,460
Number of Sequences: 62578
Number of extensions: 207440
Number of successful extensions: 396
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 10
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)