Query psy15310
Match_columns 244
No_of_seqs 125 out of 160
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:45:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3667|consensus 100.0 1.9E-32 4.2E-37 271.4 13.9 154 3-243 196-349 (682)
2 PF01017 STAT_alpha: STAT prot 100.0 7.4E-32 1.6E-36 230.5 12.8 119 3-202 64-182 (182)
3 PF02865 STAT_int: STAT protei 98.5 1E-07 2.3E-12 78.3 4.7 45 55-99 67-123 (124)
4 KOG3667|consensus 97.2 0.00065 1.4E-08 69.4 6.1 128 69-234 88-222 (682)
5 PF05075 DUF684: Protein of un 41.8 3.1E+02 0.0068 26.0 11.4 114 4-131 6-131 (345)
6 smart00340 HALZ homeobox assoc 33.5 82 0.0018 22.3 3.8 30 140-169 6-35 (44)
7 KOG3229|consensus 29.3 65 0.0014 29.7 3.5 28 69-96 4-31 (227)
8 PF05402 PqqD: Coenzyme PQQ sy 25.5 76 0.0016 22.2 2.7 51 150-205 17-67 (68)
9 COG1952 SecB Preprotein transl 21.9 1.1E+02 0.0023 26.9 3.4 42 70-114 98-142 (157)
10 TIGR00809 secB protein-export 21.8 1.2E+02 0.0025 26.0 3.5 40 70-112 92-134 (140)
11 KOG3057|consensus 21.2 47 0.001 27.6 1.0 26 58-83 67-97 (112)
No 1
>KOG3667|consensus
Probab=99.98 E-value=1.9e-32 Score=271.39 Aligned_cols=154 Identities=33% Similarity=0.436 Sum_probs=147.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHH
Q psy15310 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFK 82 (244)
Q Consensus 3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~ 82 (244)
.+++.++++|+++|.++++++.+.+...+.+|..+++ ||+.|||+||+|
T Consensus 196 ~~lq~~l~~l~~~r~Ev~~k~~~~L~~~~~~~~~~~~-eL~~Wkr~QQlA------------------------------ 244 (682)
T KOG3667|consen 196 AQLQRMLNTLDQYRKEVVEKIAKLLGLLRKLQNTLLD-ELIDWKRRQQLA------------------------------ 244 (682)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------------------------------
Confidence 4678899999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHH
Q psy15310 83 TIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQI 162 (244)
Q Consensus 83 ~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQI 162 (244)
|||||++++||+||+|||++|+++||+|+++
T Consensus 245 -------------------------------------------------~~g~P~~~~Ld~lq~~~~sla~~~~q~rq~~ 275 (682)
T KOG3667|consen 245 -------------------------------------------------CIGGPPEGSLDQLQNWFTSLAESILQLRQQI 275 (682)
T ss_pred -------------------------------------------------ccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCCCcccccccccchhhhhhhcCCcCCcCCCCccc
Q psy15310 163 KEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQVI 242 (244)
Q Consensus 163 k~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFtatVRLLVG~kLni~mnpPqVk 242 (244)
++++++++.++ |+ ..++.+++++++++..|++|+||||+|||+|+||+++|.+++|.++|.+++++++||.+.
T Consensus 276 k~l~~~~~~~~--~~-----~~~~~l~~~~~~~~~~L~~s~Fvve~QP~~p~~~~~~~~~~~~~~~t~k~~lv~~p~~~~ 348 (682)
T KOG3667|consen 276 KKLEELCQKLS--YP-----KMRAELNERITELFRNLVTSAFVVEKQPCMPLKPQRPLVAKTRVLFTVKRLLVKNPELNY 348 (682)
T ss_pred HHHHHhhhccC--CC-----CchhhHHHHHHHHHHHHHhhhceeecCCCcccCCCCchhhheeeEEeeccceecCCcchh
Confidence 99999999988 76 346779999999999999999999999999999999999999999997799999999886
Q ss_pred c
Q psy15310 243 I 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 349 ~ 349 (682)
T KOG3667|consen 349 A 349 (682)
T ss_pred h
Confidence 3
No 2
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=99.97 E-value=7.4e-32 Score=230.51 Aligned_cols=119 Identities=42% Similarity=0.657 Sum_probs=109.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHH
Q psy15310 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFK 82 (244)
Q Consensus 3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~ 82 (244)
..++.+++.|.+.|.++++++++++..++.+|+.++++||..|||+||+|
T Consensus 64 ~~~~~~~~~L~~~R~~lv~~l~~~~~~~~~lq~~ll~~eL~~WKrrQqlA------------------------------ 113 (182)
T PF01017_consen 64 QQLQQMLNELDQKRKELVSKLKETLNCLEQLQSQLLDEELIEWKRRQQLA------------------------------ 113 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Confidence 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHH
Q psy15310 83 TIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQI 162 (244)
Q Consensus 83 ~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQI 162 (244)
|||||++++||+||+|||+|||++|++|++|
T Consensus 114 -------------------------------------------------~iG~P~~~~LD~LQ~wfe~LAe~l~qlrqql 144 (182)
T PF01017_consen 114 -------------------------------------------------CIGAPFDSSLDQLQNWFESLAEILWQLRQQL 144 (182)
T ss_dssp -------------------------------------------------HTTSS----THHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------cCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhc
Q psy15310 163 KEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTS 202 (244)
Q Consensus 163 k~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtS 202 (244)
++++++.+++| |++||++..+|.++++++.+|++||+|
T Consensus 145 k~l~~l~~k~~--~~~d~~~~~~~~L~~~v~~ll~~Lv~S 182 (182)
T PF01017_consen 145 KKLEELQQKLT--YENDPIPDQLPQLNERVTELLKNLVTS 182 (182)
T ss_dssp HHHHHHHTTS----TT-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CCCCchhhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999 999999999999999999999999997
No 3
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=98.52 E-value=1e-07 Score=78.34 Aligned_cols=45 Identities=31% Similarity=0.567 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC
Q psy15310 55 RRLEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND 99 (244)
Q Consensus 55 ~~~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~ 99 (244)
-..+|++.+++| ++ |++.|+++|++||++|++||..|+|||++|+
T Consensus 67 Lq~~~~~~~~~~~fl~~~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E~~iv~~a~ 123 (124)
T PF02865_consen 67 LQQQASRQSQEDNFLLQHNLREIAQNFQNRYQQNPLELARIIRNCLQEEKRIVQEAE 123 (124)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346788888888 22 9999999999999999999999999999985
No 4
>KOG3667|consensus
Probab=97.17 E-value=0.00065 Score=69.42 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=78.1
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCc-----ccchhh
Q psy15310 69 KEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARY-----NCTLDM 143 (244)
Q Consensus 69 ~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~-----~~~LDq 143 (244)
+++.|.+||++|+++|++||+.|.|||.+|.=|.+ ++-|+|+ .... .
T Consensus 88 Lq~~~~~~p~~l~~~i~~~l~~e~rll~ea~~~~~---------------------------~~~~~~~~~~~~~~~q-e 139 (682)
T KOG3667|consen 88 LQSKYQRDPMELARIIRHCLYEESRLLREANRAAQ---------------------------AGSLAPPSQTVVQEKQ-E 139 (682)
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHHHHHHhccCc---------------------------ccccCCCccchhhhhh-H
Confidence 78899999999999999999999999999862211 2334442 1111 3
Q ss_pred HHHHHHhHHHHHHHHHHH-HHHHHHHHhhhhcccCCCCccCc-hhhHHHHHHHHHHHHhhcccccccCCCcccccccccc
Q psy15310 144 IQGYCESLAEIIWMTRQQ-IKEAERLKNLISKYVDPPNMVDV-LPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFS 221 (244)
Q Consensus 144 LQ~WfE~LAe~iwqlRQQ-Ik~le~L~~~l~~~~~~~~~~~~-l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFt 221 (244)
...-++..++-.|+.-++ ++.++.++.... |........ +.........++..+ .||-.+++|..+|.
T Consensus 140 ~l~~~~~~~~~~~q~~~~s~~~l~~lq~~~~--~~~~~~~~q~~~~~~~~~~~~~~~~--------~~lq~~l~~l~~~r 209 (682)
T KOG3667|consen 140 ELEQKTQDVRNEVQKLEQSTKELEDLQDVED--LRYKTQQAQLLSLNERNSNKTLQQQ--------AQLQRMLNTLDQYR 209 (682)
T ss_pred HHHHHHhHHHHHHHHHHHhHHHHHHhhhhHH--HHHHHHHhhhccccccchhHHHHHH--------HhHHHHHHHHHHHH
Confidence 444566777778888777 454444442211 110000000 000011111222222 57788999999999
Q ss_pred hhhhhhhcCCcCC
Q psy15310 222 ATVRLLTGSKLNV 234 (244)
Q Consensus 222 atVRLLVG~kLni 234 (244)
+.|+..+|..|++
T Consensus 210 ~Ev~~k~~~~L~~ 222 (682)
T KOG3667|consen 210 KEVVEKIAKLLGL 222 (682)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877664
No 5
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=41.82 E-value=3.1e+02 Score=26.00 Aligned_cols=114 Identities=22% Similarity=0.144 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccC-CChHHHH
Q psy15310 4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIG-KEHLYS-HDPRALF 81 (244)
Q Consensus 4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g-~~~~y~-~~p~elv 81 (244)
.|..+|.+|+++=..-.+.||..+....-....+-....+ -.-|+.=.+|.-.+.++ |+..|. +.|+.|+
T Consensus 6 ~l~~~i~~L~~k~~~~f~~lk~fi~e~~f~~~i~~~~~~L--------~~~m~d~~~~~~~~s~~~F~~~y~~~~Pl~l~ 77 (345)
T PF05075_consen 6 ELEKKIKELSEKMSAHFDDLKAFITENNFYMEIISPASTL--------MKYMRDCLKHPGKESIENFREAYEKNSPLELA 77 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH--------HHHHHHHhhCCCHHHHHHHHHHHhcCCHHHHH
Confidence 3566677777666666666666554433333322222221 23344444454455566 999997 5799999
Q ss_pred HHHHHHHHHHHHHhhhcC-C--------CcccC-chhHHHHHHHhhhhhhHhhhhcCCCC
Q psy15310 82 KTIQACLTQEMRIVQQND-P--------HLYSH-DPRALFKTIQACLTQEMRIVQQNDPV 131 (244)
Q Consensus 82 ~~i~~~l~~e~r~v~~a~-p--------hl~~~-~~~~~~~~~~lq~~qe~~iiqyq~~~ 131 (244)
-.+-..|.++ .+ | ++.+. ||+.-+.++.-=.+|=.||==|-.++
T Consensus 78 y~l~s~L~~~------~TNPl~~am~ad~~~~~~tf~kW~~ii~~vl~q~l~lEafa~Gl 131 (345)
T PF05075_consen 78 YTLMSLLEQK------STNPLKMAMDADKLKTKATFEKWKKIIDGVLGQLLFLEAFASGL 131 (345)
T ss_pred HHHHHHHccc------CCCHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998843 33 4 56666 99999999877677766766655544
No 6
>smart00340 HALZ homeobox associated leucin zipper.
Probab=33.47 E-value=82 Score=22.27 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=21.3
Q ss_pred chhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15310 140 TLDMIQGYCESLAEIIWMTRQQIKEAERLK 169 (244)
Q Consensus 140 ~LDqLQ~WfE~LAe~iwqlRQQIk~le~L~ 169 (244)
.-+-|-.||++|++-.-.++..+.++..+.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346789999999998766666655554443
No 7
>KOG3229|consensus
Probab=29.29 E-value=65 Score=29.68 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=25.1
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHhh
Q psy15310 69 KEHLYSHDPRALFKTIQACLTQEMRIVQ 96 (244)
Q Consensus 69 ~~~~y~~~p~elv~~i~~~l~~e~r~v~ 96 (244)
|.-+.|++|-|++|-+++.+-.|+|-|.
T Consensus 4 ~~~~~~pdPKEq~r~wq~kiRke~r~ld 31 (227)
T KOG3229|consen 4 FGKTPGPDPKEQVREWQSKIRKEGRQLD 31 (227)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 5567799999999999999999999775
No 8
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=25.54 E-value=76 Score=22.22 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccc
Q psy15310 150 SLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFI 205 (244)
Q Consensus 150 ~LAe~iwqlRQQIk~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFV 205 (244)
..|..||..-.--..++++...+.+.|+.++ ..+.+.+..++..|....+|
T Consensus 17 ~~a~~Iw~~~~g~~t~~ei~~~l~~~y~~~~-----~~~~~dv~~fl~~L~~~glI 67 (68)
T PF05402_consen 17 ETAAFIWELLDGPRTVEEIVDALAEEYDVDP-----EEAEEDVEEFLEQLREKGLI 67 (68)
T ss_dssp THHHHHHHH--SSS-HHHHHHHHHHHTT--H-----HHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHHCcCc
Confidence 5578899877655556666666665575553 35788999999999988775
No 9
>COG1952 SecB Preprotein translocase subunit SecB [Intracellular trafficking and secretion]
Probab=21.95 E-value=1.1e+02 Score=26.90 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHhhhcC-CCcccC--chhHHHHHH
Q psy15310 70 EHLYSHDPRALFKTIQACLTQEMRIVQQND-PHLYSH--DPRALFKTI 114 (244)
Q Consensus 70 ~~~y~~~p~elv~~i~~~l~~e~r~v~~a~-phl~~~--~~~~~~~~~ 114 (244)
+-.+..||.=||=|.|.|.+ -+++++. |-+.+. +|.+|.--.
T Consensus 98 ~~L~i~CP~iLFPYaR~~Is---~~t~~ggFPpl~L~PInF~aly~~~ 142 (157)
T COG1952 98 HLLGIECPNILFPYARELIS---DLTARGGFPPLMLAPINFDALYAQR 142 (157)
T ss_pred hhhhccCchhhhHHHHHHHH---HHhhcCCCCccccCCcCHHHHHHHH
Confidence 45678999999999999999 6899998 755555 999998654
No 10
>TIGR00809 secB protein-export chaperone SecB. The archaeal Methanococcus jannaschii homolog MJ0357 has been shown (PubMed:14985117) to share many properties, including chaperone-like activity, and scores between trusted and noise.
Probab=21.79 E-value=1.2e+02 Score=26.00 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=32.2
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHhhhcC-CCcccC--chhHHHH
Q psy15310 70 EHLYSHDPRALFKTIQACLTQEMRIVQQND-PHLYSH--DPRALFK 112 (244)
Q Consensus 70 ~~~y~~~p~elv~~i~~~l~~e~r~v~~a~-phl~~~--~~~~~~~ 112 (244)
+.....||.-||=+.|.|.+ .+++.+. |-+... +|++|..
T Consensus 92 ~~L~i~cP~iLFPyaRe~Vs---dl~~~gGFPpl~L~pInF~aLY~ 134 (140)
T TIGR00809 92 HCLGVHCPNMLFPYAREIIS---SCVQRGTFPPLNLAPVNFDALYM 134 (140)
T ss_pred HHHhcCCchhhhHHHHHHHH---HHHhhCCCCccccCccCHHHHHH
Confidence 34567899999999999999 6888887 754444 9999875
No 11
>KOG3057|consensus
Probab=21.23 E-value=47 Score=27.63 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.7
Q ss_pred HHHHHHhhhcc----ccccc-CCChHHHHHH
Q psy15310 58 EAEEEVEEDIG----KEHLY-SHDPRALFKT 83 (244)
Q Consensus 58 ~~e~~~~~~~g----~~~~y-~~~p~elv~~ 83 (244)
||=..+|||-+ |.++| |-||.+.|..
T Consensus 67 rC~~~~geD~~~Ck~f~~~y~SlCP~~WV~k 97 (112)
T KOG3057|consen 67 RCIKAKGEDANPCKKFQKVYRSLCPGEWVEK 97 (112)
T ss_pred HHHHHhcccchhHHHHHHHHHHhCcHHHHHH
Confidence 57788999987 88888 7799999987
Done!