Query psy15310
Match_columns 244
No_of_seqs 125 out of 160
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:46:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y1u_A Signal transducer and a 100.0 1.3E-47 4.4E-52 375.6 14.8 160 2-243 85-244 (585)
2 1yvl_A Signal transducer and a 100.0 2.1E-46 7.3E-51 372.0 8.2 182 57-243 66-362 (683)
3 1bg1_A Protein (transcription 100.0 1.2E-43 4.1E-48 347.9 13.8 156 4-243 76-240 (596)
4 1bf5_A Signal transducer and a 100.0 1.6E-43 5.5E-48 345.8 13.0 156 4-243 63-227 (575)
5 1uur_A Stata protein, STAT pro 99.5 4.1E-16 1.4E-20 150.1 -0.9 76 161-243 88-172 (473)
6 1bgf_A STAT-4; transcription f 98.4 2.4E-07 8.1E-12 75.3 4.4 44 56-99 66-121 (124)
7 1yvl_A Signal transducer and a 98.0 5.1E-06 1.8E-10 83.3 6.5 50 3-52 197-246 (683)
8 1y1u_A Signal transducer and a 83.6 3.2 0.00011 41.1 8.2 35 100-134 13-56 (585)
9 1bg1_A Protein (transcription 79.2 3.6 0.00012 41.0 6.8 35 101-135 15-58 (596)
10 1bf5_A Signal transducer and a 70.4 5.1 0.00017 39.7 5.3 33 101-133 4-45 (575)
11 1y4m_A HERV-FRD_6P24.1 proviru 33.8 44 0.0015 23.4 3.6 27 139-165 7-33 (53)
12 1u9d_A Hypothetical protein VC 29.2 18 0.00062 28.8 1.2 54 64-137 1-69 (122)
13 1mof_A Moloney murine leukemia 28.3 62 0.0021 22.8 3.6 27 139-165 9-35 (55)
14 4dxe_H ACP, acyl carrier prote 23.5 29 0.00099 25.9 1.3 30 61-90 7-37 (101)
15 2q5z_A MAZG, hypothetical prot 21.4 2.6E+02 0.0091 21.0 7.2 76 128-203 9-90 (114)
No 1
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=100.00 E-value=1.3e-47 Score=375.62 Aligned_cols=160 Identities=51% Similarity=0.772 Sum_probs=156.9
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHH
Q psy15310 2 DQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALF 81 (244)
Q Consensus 2 ~~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv 81 (244)
+++|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|
T Consensus 85 ~~~lq~~~~~L~~~R~~l~~~~~~~l~~~~~lq~~ll~~eL~~WKrrQq~a----------------------------- 135 (585)
T 1y1u_A 85 ETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLA----------------------------- 135 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------
Confidence 467999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHH
Q psy15310 82 KTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQ 161 (244)
Q Consensus 82 ~~i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQ 161 (244)
|||||++++||+||+|||.+||++||+|||
T Consensus 136 --------------------------------------------------~iG~p~~~~LD~lQ~w~e~lae~l~q~rqq 165 (585)
T 1y1u_A 136 --------------------------------------------------GNGGPPEGSLDVLQSWCEKLAEIIWQNRQQ 165 (585)
T ss_dssp --------------------------------------------------TTTCCCCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCCCcccccccccchhhhhhhcCCcCCcCCCCcc
Q psy15310 162 IKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241 (244)
Q Consensus 162 Ik~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQPPQVLKT~tKFtatVRLLVG~kLni~mnpPqV 241 (244)
++++++|+++++ |++| +...++.+++++++|++.||+||||||+||||||||++||+|+||||||++||+||+||+|
T Consensus 166 l~~l~~l~~~~~--~~~~-~~~~l~~l~~~~~~ll~~Lv~ssfVVekQPP~VlKt~~kF~~~vRlLvg~~Ln~~~~~~~V 242 (585)
T 1y1u_A 166 IRRAEHLCQQLP--IPGP-VEEMLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 242 (585)
T ss_dssp HHHHHHHHTTSC--CCST-HHHHHHHHHHHHHHHHHHHHHHTEEEEECCCSEEESSCCEEEEEEESTTTTTTCTTSCCBE
T ss_pred HHHHHHhhhcCC--CCCC-ccccHHHHHHHHHHHHHHHHHhheEeecCCCceEEecceEEEEEeeeeccccccccCCcee
Confidence 999999999999 9998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy15310 242 II 243 (244)
Q Consensus 242 k~ 243 (244)
+|
T Consensus 243 ~~ 244 (585)
T 1y1u_A 243 KA 244 (585)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 2
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-46 Score=372.01 Aligned_cols=182 Identities=23% Similarity=0.309 Sum_probs=169.0
Q ss_pred HHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC-----C------------CcccC-c
Q psy15310 57 LEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND-----P------------HLYSH-D 106 (244)
Q Consensus 57 ~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~-----p------------hl~~~-~ 106 (244)
.+|||.++|| || |+++|++||++||+||++||+.|+|||++|. | |.+++ +
T Consensus 66 ~q~~~~~~e~~fLlq~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E~riv~~A~~~~~~~~~~~~~~~~~~~~~~i~~~ 145 (683)
T 1yvl_A 66 DQYSRFSLENNFLLQHNIRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKELDSK 145 (683)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCGGGGGC------CHHHHHHHHHHHH
T ss_pred HHHHhccCccchHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccccccchhHHHHHHH
Confidence 6899999998 44 9999999999999999999999999999997 1 56676 8
Q ss_pred hhHHHHHH--------HhhhhhhHhhhhcCC-------------------------------------------------
Q psy15310 107 PRALFKTI--------QACLTQEMRIVQQND------------------------------------------------- 129 (244)
Q Consensus 107 ~~~~~~~~--------~lq~~qe~~iiqyq~------------------------------------------------- 129 (244)
+++++..+ +|++.||||.++|+.
T Consensus 146 v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l~~~~ 225 (683)
T 1yvl_A 146 VRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTE 225 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------CHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877 899999999998732
Q ss_pred -------------------CCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccCchhhHHH
Q psy15310 130 -------------------PVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNA 190 (244)
Q Consensus 130 -------------------~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk~le~L~~~l~~~~~~~~~~~~l~~L~~ 190 (244)
.||||||++++||+||+|||.+||++|++|||++++++++++++ |+++|++..++.+++
T Consensus 226 ~lq~~ll~~eL~~WKrrQq~a~~G~p~~~~Ld~lQ~w~e~lae~l~q~rqql~~l~~l~~~~~--~~~~p~~~~~~~l~~ 303 (683)
T 1yvl_A 226 LTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYT--YEHDPITKNKQVLWD 303 (683)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTCSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCccccchHHHHH
Confidence 79999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCCcCCCCcccc
Q psy15310 191 QITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNVYMTPPQVII 243 (244)
Q Consensus 191 ~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni~mnpPqVk~ 243 (244)
++++|++.||+||||||+|| ||||||++||+|+||+||| +++| ++|+|+|
T Consensus 304 ~~~~ll~~Lv~ssfVVekQP~mp~~pqrPqVlKT~~kF~~~vRlLv~~~~ln---~~~~Vk~ 362 (683)
T 1yvl_A 304 RTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELN---YNLKVKV 362 (683)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECTTCTTSTTEEETTSEEEEEEEESSCCGGGT---TCCEEEE
T ss_pred HHHHHHHHHHHhheeeeccCCccCCCCCCceEeecceeeeeeeeeecccccc---cCCceeE
Confidence 99999999999999999999 9999999999999999999 8998 4667764
No 3
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=100.00 E-value=1.2e-43 Score=347.94 Aligned_cols=156 Identities=34% Similarity=0.488 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHHH
Q psy15310 4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKT 83 (244)
Q Consensus 4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~~ 83 (244)
.|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|
T Consensus 76 ~l~~~~~~l~~~R~e~~~k~~~~l~~~~~lq~~ll~~EL~eWKrrQq~a------------------------------- 124 (596)
T 1bg1_A 76 QLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIA------------------------------- 124 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-------------------------------
Confidence 4899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHH
Q psy15310 84 IQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK 163 (244)
Q Consensus 84 i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk 163 (244)
|||||++++||+||+|||.+||++||+||||+
T Consensus 125 ------------------------------------------------~iG~p~~~~LD~lQ~w~e~lae~l~q~rqql~ 156 (596)
T 1bg1_A 125 ------------------------------------------------CIGGPPNICLDRLENWITSLAESQLQTRQQIK 156 (596)
T ss_dssp ------------------------------------------------HTTCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------cCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCC
Q psy15310 164 EAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNV 234 (244)
Q Consensus 164 ~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni 234 (244)
++++++++++ |++||++..++.+++++++|++.||+||||||||| ||||||++||+|+|||||| +++|+
T Consensus 157 ~l~~l~~k~~--~~~dpi~~~~~~l~~~~~~ll~~Lv~ssFVVEkQP~mp~~p~rPqVlKT~~kFt~~vRlLv~l~~ln~ 234 (596)
T 1bg1_A 157 KLEELQQKVS--YKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNY 234 (596)
T ss_dssp HHHHHHHHSC--CTTCTTTTTHHHHHHHHHHHHHHHHHHHEEEEEEEECTTCTTCTTEEETTSCEEEEEEESSCCGGGTT
T ss_pred HHHHHHhhcC--CCCCccccchHHHHHHHHHHHHHHHHhheeeeccCCCccCCCCCceEeecceEEEeehhhhccccccC
Confidence 9999999999 99999999999999999999999999999999999 9999999999999999999 99998
Q ss_pred cCCCCcccc
Q psy15310 235 YMTPPQVII 243 (244)
Q Consensus 235 ~mnpPqVk~ 243 (244)
+|+|+|
T Consensus 235 ---~~~Vkv 240 (596)
T 1bg1_A 235 ---QLKIKV 240 (596)
T ss_dssp ---TCEEEE
T ss_pred ---CcceEE
Confidence 667764
No 4
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=100.00 E-value=1.6e-43 Score=345.83 Aligned_cols=156 Identities=30% Similarity=0.434 Sum_probs=151.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCChHHHHHH
Q psy15310 4 LLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKT 83 (244)
Q Consensus 4 ~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~~~~~~~~e~~~~~~~g~~~~y~~~p~elv~~ 83 (244)
.++.++++|+++|+++++++++++..++.+|..++++||.+|||+||+|
T Consensus 63 ~l~~~~~~l~~~R~~~~~~~~~~~~~~~~lq~~ll~~eL~~WkrrQq~a------------------------------- 111 (575)
T 1bf5_A 63 LLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA------------------------------- 111 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-------------------------------
Confidence 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcccCchhHHHHHHHhhhhhhHhhhhcCCCCCCCCCcccchhhHHHHHHhHHHHHHHHHHHHH
Q psy15310 84 IQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK 163 (244)
Q Consensus 84 i~~~l~~e~r~v~~a~phl~~~~~~~~~~~~~lq~~qe~~iiqyq~~~~iGaP~~~~LDqLQ~WfE~LAe~iwqlRQQIk 163 (244)
|||||++++||+||+|||.+||++||+||||+
T Consensus 112 ------------------------------------------------~iG~p~~~~Ld~lQ~w~e~lae~l~q~rqql~ 143 (575)
T 1bf5_A 112 ------------------------------------------------CIGGPPNACLDQLQNWFTIVAESLQQVRQQLK 143 (575)
T ss_dssp ------------------------------------------------HTTSSCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------cCCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHHhhcccccccCC--------Ccccccccccchhhhhhhc-CCcCC
Q psy15310 164 EAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTNTRFSATVRLLTG-SKLNV 234 (244)
Q Consensus 164 ~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~LVtSSFVVEKQP--------PQVLKT~tKFtatVRLLVG-~kLni 234 (244)
++++++++++ |++||++..++.+++++++|++.||+||||||+|| ||||||++||+|+|||||| +++|+
T Consensus 144 ~l~~l~~k~~--~~~dp~~~~~~~l~~~~~~ll~~Lv~ssFVVekQP~mp~~~~rPqVlKT~~kFt~~vRlLv~~~~ln~ 221 (575)
T 1bf5_A 144 KLEELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNY 221 (575)
T ss_dssp HHHHHHHHCC--CTTCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCTTCTTCTTEEETTSEEEEEEEETTCCGGGTT
T ss_pred HHHHHHhhcC--CCCCccccchHHHHHHHHHHHHHHHHhheeeeccCCCccCCCCCceEeecceeeEeeeehhccccccc
Confidence 9999999999 99999999999999999999999999999999999 9999999999999999999 99998
Q ss_pred cCCCCcccc
Q psy15310 235 YMTPPQVII 243 (244)
Q Consensus 235 ~mnpPqVk~ 243 (244)
+|.|+|
T Consensus 222 ---~~~Vk~ 227 (575)
T 1bf5_A 222 ---NLKVKV 227 (575)
T ss_dssp ---TCEEEE
T ss_pred ---CcceEE
Confidence 566664
No 5
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=99.54 E-value=4.1e-16 Score=150.09 Aligned_cols=76 Identities=22% Similarity=0.353 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhhcccCCCCccCchhhHHHHHHHHHHHH-----hhcccccccCC-Cccccccccc---chhhhhhhcCC
Q psy15310 161 QIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHL-----VTSTFIIEKQP-PQVMKTNTRF---SATVRLLTGSK 231 (244)
Q Consensus 161 QIk~le~L~~~l~~~~~~~~~~~~l~~L~~~it~LLs~L-----VtSSFVVEKQP-PQVLKT~tKF---tatVRLLVG~k 231 (244)
+++++++|++.+. +.. ..++.+...++.+++.+ ++||||||||| ||||||++|| +++||+|||++
T Consensus 88 ~l~~l~~l~q~L~--~~~----~~l~~l~~el~~~l~~~~~~~~~~safVvekQP~PqVlkt~~kf~~d~~~VrlLvG~k 161 (473)
T 1uur_A 88 DLAKLFALKQDLQ--IQF----KQLSLLHNEIQSILNPQHSAPKPNVALVLKSQPFPVVISKGKQLGENQLVVLVLTGAR 161 (473)
T ss_dssp HHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHSTTSCCCCSSCEEEEEECCCSCEEETTCBCCTTTSEEEEECCSS
T ss_pred HHhHHHHHHHHhH--hhh----hHHHHHHHHHHHHHhccCCCCCceEEEEEEcCCCCeEEEecccccccceEEEEeeccc
Confidence 4556666655554 211 35666888999999999 99999999999 9999999999 99999999999
Q ss_pred cCCcCCCCcccc
Q psy15310 232 LNVYMTPPQVII 243 (244)
Q Consensus 232 Lni~mnpPqVk~ 243 (244)
||+||+|| |+|
T Consensus 162 l~~~~~~p-V~a 172 (473)
T 1uur_A 162 SNFHINGP-VKA 172 (473)
T ss_dssp CCEEEEEE-EEE
T ss_pred cCcccCCc-eEE
Confidence 99999999 986
No 6
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=98.38 E-value=2.4e-07 Score=75.33 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=39.0
Q ss_pred HHHHHHHHhhh-------cc-----cccccCCChHHHHHHHHHHHHHHHHHhhhcC
Q psy15310 56 RLEAEEEVEED-------IG-----KEHLYSHDPRALFKTIQACLTQEMRIVQQND 99 (244)
Q Consensus 56 ~~~~e~~~~~~-------~g-----~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~ 99 (244)
-.+|++.++|| |+ |++.|++||++||++|++||..|+|||++|.
T Consensus 66 ~~~~~~~~~e~~fL~q~~L~~~~~~~q~~y~~nP~~L~~~i~~~L~~E~~iv~~a~ 121 (124)
T 1bgf_A 66 DEQLGRVSKEKNLLLIHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN 121 (124)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhh
Confidence 35777878887 33 9999999999999999999999999999986
No 7
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=98.03 E-value=5.1e-06 Score=83.29 Aligned_cols=50 Identities=32% Similarity=0.418 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHH
Q psy15310 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQ 52 (244)
Q Consensus 3 ~~~~~~~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~el~~wk~~qq~~ 52 (244)
..|+.+++.|+++|+++++++++++..++.+|..+|++||.+|||+||+|
T Consensus 197 ~~lq~~~~~l~~~R~~~~~k~~~~l~~~~~lq~~ll~~eL~~WKrrQq~a 246 (683)
T 1yvl_A 197 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA 246 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 36899999999999999999999999999999999999999999999998
No 8
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=83.58 E-value=3.2 Score=41.13 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=29.9
Q ss_pred CCcccC-chhHHHHHH--------HhhhhhhHhhhhcCCCCCCC
Q psy15310 100 PHLYSH-DPRALFKTI--------QACLTQEMRIVQQNDPVSNG 134 (244)
Q Consensus 100 phl~~~-~~~~~~~~~--------~lq~~qe~~iiqyq~~~~iG 134 (244)
.|..|+ ++++++..+ +|++.||||.++|+++..+-
T Consensus 13 ~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~~~~~~~ 56 (585)
T 1y1u_A 13 KHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQ 56 (585)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhH
Confidence 378887 999999877 99999999999999877543
No 9
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=79.19 E-value=3.6 Score=40.95 Aligned_cols=35 Identities=11% Similarity=-0.059 Sum_probs=29.9
Q ss_pred CcccC-chhHHHHHH--------HhhhhhhHhhhhcCCCCCCCC
Q psy15310 101 HLYSH-DPRALFKTI--------QACLTQEMRIVQQNDPVSNGA 135 (244)
Q Consensus 101 hl~~~-~~~~~~~~~--------~lq~~qe~~iiqyq~~~~iGa 135 (244)
|..|+ ++++++..+ +|++.||||.++|+.+...++
T Consensus 15 ~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk~~q~~~~ 58 (596)
T 1bg1_A 15 QQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGD 58 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 77887 999999876 999999999999998776644
No 10
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=70.42 E-value=5.1 Score=39.73 Aligned_cols=33 Identities=6% Similarity=-0.139 Sum_probs=26.6
Q ss_pred CcccC-chhHHHHHH--------HhhhhhhHhhhhcCCCCCC
Q psy15310 101 HLYSH-DPRALFKTI--------QACLTQEMRIVQQNDPVSN 133 (244)
Q Consensus 101 hl~~~-~~~~~~~~~--------~lq~~qe~~iiqyq~~~~i 133 (244)
|.+++ ++++++..+ +|++.||||+++|+.+...
T Consensus 4 ~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 34455 788888877 9999999999999887644
No 11
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=33.78 E-value=44 Score=23.35 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.3
Q ss_pred cchhhHHHHHHhHHHHHHHHHHHHHHH
Q psy15310 139 CTLDMIQGYCESLAEIIWMTRQQIKEA 165 (244)
Q Consensus 139 ~~LDqLQ~WfE~LAe~iwqlRQQIk~l 165 (244)
.+++.++.--+++|+.+||+|.-+.-+
T Consensus 7 ~sl~~l~~ql~sla~vvlQNRraLDlL 33 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQNRRGLDML 33 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999877654
No 12
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=29.21 E-value=18 Score=28.83 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred hhhcccccccCCChHHHHHHHHHHHHHHHHHhhhcCCCcccC--chhHHHHHH---------HhhhhhhHhhhhcCCCC-
Q psy15310 64 EEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSH--DPRALFKTI---------QACLTQEMRIVQQNDPV- 131 (244)
Q Consensus 64 ~~~~g~~~~y~~~p~elv~~i~~~l~~e~r~v~~a~phl~~~--~~~~~~~~~---------~lq~~qe~~iiqyq~~~- 131 (244)
|.|||-+|.|-+ .|||||+-.. ..+.+..++ =.+-..|+|-+=|..+-
T Consensus 1 ~~~~~~~~~~~~--------------------~~~MPhlr~rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~s~~ 60 (122)
T 1u9d_A 1 GVDLGTENLYFS--------------------SNAMPHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQY 60 (122)
T ss_dssp CCCCSSTTTTBT--------------------TCCCCEEEEESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCCCC
T ss_pred CCccccceeeec--------------------cCCCceEEECCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEeeeEE
Confidence 468888888854 5899998887 666666665 23446788876555522
Q ss_pred ---CCCCCc
Q psy15310 132 ---SNGARY 137 (244)
Q Consensus 132 ---~iGaP~ 137 (244)
|+|.|+
T Consensus 61 i~~G~~MP~ 69 (122)
T 1u9d_A 61 FAEGGVYPM 69 (122)
T ss_dssp CCTTCCCCE
T ss_pred EecCCCCCE
Confidence 256664
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=28.33 E-value=62 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.6
Q ss_pred cchhhHHHHHHhHHHHHHHHHHHHHHH
Q psy15310 139 CTLDMIQGYCESLAEIIWMTRQQIKEA 165 (244)
Q Consensus 139 ~~LDqLQ~WfE~LAe~iwqlRQQIk~l 165 (244)
.+++.++.--+++|+.+||||.-+.-+
T Consensus 9 ~si~~l~~ql~sla~vvlQNRraLD~L 35 (55)
T 1mof_A 9 KSISNLEKSLTSLSEVVLQNRRGLDLL 35 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888899999999999877654
No 14
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=23.50 E-value=29 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=12.7
Q ss_pred HHHhhhcccccccCC-ChHHHHHHHHHHHHH
Q psy15310 61 EEVEEDIGKEHLYSH-DPRALFKTIQACLTQ 90 (244)
Q Consensus 61 ~~~~~~~g~~~~y~~-~p~elv~~i~~~l~~ 90 (244)
|--|.|+|..+.|.. +||++...++.++..
T Consensus 7 ~~~~~~~~~~~~~~~m~~mei~~~l~~iiae 37 (101)
T 4dxe_H 7 HSSGVDLGTENLYFQSNAMENFDKVKDIIVD 37 (101)
T ss_dssp -----------------CTTHHHHHHHHHHH
T ss_pred cccccCcchHHHHHhcCHHHHHHHHHHHHHH
Confidence 566889999999987 899999999999983
No 15
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=21.40 E-value=2.6e+02 Score=20.99 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCCCCCCCCcc-cchhhHHHHHHhHH---H-HHHHHHHHHHHHHHHHhhhhcccCC-CCccCchhhHHHHHHHHHHHHhh
Q psy15310 128 NDPVSNGARYN-CTLDMIQGYCESLA---E-IIWMTRQQIKEAERLKNLISKYVDP-PNMVDVLPNLNAQITQCLSHLVT 201 (244)
Q Consensus 128 q~~~~iGaP~~-~~LDqLQ~WfE~LA---e-~iwqlRQQIk~le~L~~~l~~~~~~-~~~~~~l~~L~~~it~LLs~LVt 201 (244)
+++.|.+.|++ ..++.+|+|....+ + .-........++.++...+.....+ +........+.+.+-++|..|+.
T Consensus 9 ~~~~~~~~~~~~m~l~elq~~i~~~~~~~~~~~~~~~kL~eE~gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~l~~ 88 (114)
T 2q5z_A 9 HHSSGLVPRGSHMKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCA 88 (114)
T ss_dssp -----------CCBHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 45667776654 47888888755442 0 0011122445555555544321111 11112245688888998888875
Q ss_pred cc
Q psy15310 202 ST 203 (244)
Q Consensus 202 SS 203 (244)
=+
T Consensus 89 LA 90 (114)
T 2q5z_A 89 LA 90 (114)
T ss_dssp HH
T ss_pred HH
Confidence 44
Done!