RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15310
(244 letters)
>gnl|CDD|216246 pfam01017, STAT_alpha, STAT protein, all-alpha domain. STAT
proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. STAT proteins also include an SH2 domain
pfam00017.
Length = 182
Score = 53.5 bits (129), Expect = 6e-09
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
G LD +Q + +LAE ++ RQQ+K+ E L+ ++ + + P LN ++
Sbjct: 115 IGGPPEGCLDQLQNWFTALAESLFQLRQQLKKLEELRQKLT--YEGDPITKGRPQLNERV 172
Query: 193 TQCLSHLVTS 202
T+ L +LVTS
Sbjct: 173 TELLKNLVTS 182
Score = 34.6 bits (80), Expect = 0.020
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQL 51
L + L Q R +LAD +ET L+E Q +L+ EL++WKR QQL
Sbjct: 64 LTLQQMLNKLDQKRKELADKHQETLGLLEALQNALLDEELIEWKRRQQL 112
>gnl|CDD|145817 pfam02864, STAT_bind, STAT protein, DNA binding domain. STAT
proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. This family represents the DNA binding domain
of STAT, which has an ig-like fold. STAT proteins also
include an SH2 domain pfam00017.
Length = 254
Score = 54.4 bits (131), Expect = 7e-09
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 204 FIIEKQP--------PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVI 242
F++E+QP P V+KT T+F+A VRLL +LN + P VI
Sbjct: 1 FVVERQPCMPTHPQRPLVLKTGTQFTAKVRLLVKLQELNYQLKPKVVI 48
>gnl|CDD|219627 pfam07897, DUF1675, Protein of unknown function (DUF1675). The
members of this family are sequences derived from
hypothetical plant proteins of unknown function. One
member of this family is annotated as a putative
RNA-binding protein, but no evidence was found to
support this.
Length = 283
Score = 30.3 bits (68), Expect = 0.88
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 45 WKREQQLQERRRLEAEEEVEE 65
W++ +++Q RRLEA+ + E
Sbjct: 72 WRKRKEMQSLRRLEAKRKRSE 92
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10. Histone deacetylases 10
are class IIb Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC10
has an N-terminal deacetylase domain and a C-terminal
pseudo-repeat that shares significant similarity with
its catalytic domain. It is located in the nucleus and
cytoplasm, and is involved in regulation of
melanogenesis. It transcriptionally down-regulates
thioredoxin-interacting protein (TXNIP), leading to
altered reactive oxygen species (ROS) signaling in human
gastric cancer cells. Known interaction partners of
HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins.
Length = 337
Score = 29.8 bits (67), Expect = 1.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 47 REQQLQER-RRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSH 105
R+ L +R RL A E EE+I H S + +L + Q +E+ + +Y H
Sbjct: 22 RQYGLVQRCLRLPAREASEEEILLVH--SPEYLSLVRETQVMNKEELMAISGKYDAVYFH 79
>gnl|CDD|237505 PRK13783, PRK13783, adenylosuccinate synthetase; Provisional.
Length = 404
Score = 29.3 bits (66), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 1 MDQLLNT--KIKALGQDRCQLADNLKETCFLIENTQGKILNVEL 42
M+ LL KIK L ++ L+E L E TQG +L++++
Sbjct: 180 MEDLLTFYEKIKDLVVSPVEIKRILEEKSVLFEGTQGVLLDLDV 223
>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain. This family
consists of the importin alpha (karyopherin alpha),
importin beta (karyopherin beta) binding domain. The
domain mediates formation of the importin alpha beta
complex; required for classical NLS import of proteins
into the nucleus, through the nuclear pore complex and
across the nuclear envelope. Also in the alignment is
the NLS of importin alpha which overlaps with the IBB
domain.
Length = 97
Score = 27.7 bits (62), Expect = 2.1
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 39 NVELLKWKREQQLQERRR--------LEAEEEVEEDIGKEHLYSHDP 77
VEL K KRE+QL +RR E E E++ + L P
Sbjct: 31 GVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLELP 77
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.9 bits (65), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 31 ENTQGKILNVELL-KWKREQQLQERRRLEAEEEVEEDIGKE 70
E I +ELL KWK E++ ++ E + ++D +E
Sbjct: 63 EEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEE 103
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 28.8 bits (65), Expect = 2.6
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 1 MDQLLNTKIKALGQDRCQLADNLKETC-----FLIENTQG-----KILNVELLKWKREQQ 50
++ + + QL D L++ IE+ K+ + E L+ ++E++
Sbjct: 501 KAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEK 560
Query: 51 --LQERRRLEAEEEVEEDIGKE----HLYSHDPRALFK 82
L+E++RL ++ EE KE P FK
Sbjct: 561 EALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFK 598
>gnl|CDD|219863 pfam08490, DUF1744, Domain of unknown function (DUF1744). This
domain is found on the epsilon catalytic subunit of DNA
polymerase. It is found C terminal to pfam03104 and
pfam00136.
Length = 396
Score = 28.0 bits (63), Expect = 4.3
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 47 REQQLQERRRLEAEEEV---EEDIGKEHLYSHDPRALFKTIQACLT--------QEMRIV 95
E + + +L+ +V E++ E Y D + +K + L + +
Sbjct: 7 TELREKLLEKLDKFGQVFSYPENMTFEVEYFTDEKKAYKALSKALLKYREEKSGPTLLAL 66
Query: 96 QQNDPHLYSHDPRAL--FKTIQACLTQE 121
Q P L F +Q + +
Sbjct: 67 QSPFPSRLKKKIPILEEFPCVQIHINDD 94
>gnl|CDD|217538 pfam03405, FA_desaturase_2, Fatty acid desaturase.
Length = 330
Score = 28.2 bits (63), Expect = 4.4
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 55 RRLEAEEEVEEDIGKEHLY---SHDPRALFKTIQACLTQEMRIVQQNDPHL 102
R AEE D+ ++LY D R + KTIQ + M +N+P+L
Sbjct: 105 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPGTENNPYL 155
>gnl|CDD|182711 PRK10766, PRK10766, DNA-binding transcriptional regulator TorR;
Provisional.
Length = 221
Score = 27.7 bits (62), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 160 QQIKEAERLKNLISKYVDPPN--MVDVL-----PNLNAQI 192
Q+ ERL ++S V+ PN +DVL LN +
Sbjct: 176 GQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKLNPDL 215
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 27.2 bits (61), Expect = 7.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 141 LDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKY 175
L I+ YC+ IW+ QI+ + +I Y
Sbjct: 207 LGAIKQYCDR---AIWLEHGQIRMEGSPEEVIPAY 238
>gnl|CDD|217256 pfam02865, STAT_int, STAT protein, protein interaction domain.
STAT proteins (Signal Transducers and Activators of
Transcription) are a family of transcription factors
that are specifically activated to regulate gene
transcription when cells encounter cytokines and growth
factors. STAT proteins also include an SH2 domain
pfam00017.
Length = 124
Score = 26.5 bits (59), Expect = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 72 LYSHDPRALFKTIQACLTQEMRIVQQN 98
Y H+P L + I+ CL +E RI+Q+
Sbjct: 96 RYQHNPLELARIIRNCLQEERRILQEA 122
Score = 26.5 bits (59), Expect = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 102 LYSHDPRALFKTIQACLTQEMRIVQQN 128
Y H+P L + I+ CL +E RI+Q+
Sbjct: 96 RYQHNPLELARIIRNCLQEERRILQEA 122
>gnl|CDD|150838 pfam10226, DUF2216, Uncharacterized conserved proteins (DUF2216).
This is the conserved N-terminal half of a proteins
which are found from worms to humans. some annotation
suggests it might be PKR, the Hepatitis delta
antigen-interacting protein A, but this could not be
confirmed.
Length = 195
Score = 26.7 bits (59), Expect = 9.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 GKILNVELLKWKREQQLQERRRLEAE 60
K+ + ELLKW +E+ ++ RR EAE
Sbjct: 7 SKLSDEELLKWSKEELVRRLRREEAE 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,268,865
Number of extensions: 1146842
Number of successful extensions: 1373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 52
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)