RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15310
(244 letters)
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 104 bits (261), Expect = 5e-26
Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 11/238 (4%)
Query: 11 ALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKE 70
A+ Q Q+ +E + ++T+ ++ ++ + Q QE R++A+ + +
Sbjct: 9 AMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQ 68
Query: 71 HLYSHDPRA--LFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQN 128
S + +++ L +E + +QQ L + + ++ T +
Sbjct: 69 ERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEK-HQKTLQLLRKQQTIILDDELIQ 127
Query: 129 -----DPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVD 183
NG +LD++Q +CE LAEIIW RQQI+ AE L + P + +
Sbjct: 128 WKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRAEHLC---QQLPIPGPVEE 184
Query: 184 VLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLLTGSKLNVYMTPPQV 241
+L +NA IT +S LVTSTFIIEKQPPQV+KT T+F+ATVRLL G KLNV+M PPQV
Sbjct: 185 MLAEVNATITDIISALVTSTFIIEKQPPQVLKTQTKFAATVRLLVGGKLNVHMNPPQV 242
Score = 42.1 bits (98), Expect = 9e-05
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 1 MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
++ L + + L Q R +LA+ ++T L+ Q IL+ EL++WKR QQL
Sbjct: 84 LETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAG 136
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 98.0 bits (243), Expect = 1e-23
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 23/217 (10%)
Query: 44 KWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLY 103
K K + LQ+ + ++ + L ++ + +Q ++M
Sbjct: 35 KMKVVENLQDDFDFN-YKTLKSQGDMQDLNGNNQSVTRQKMQQL--EQMLTALDQMRRSI 91
Query: 104 SHDPRALFKTIQACLTQEM-------RIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIW 156
+ L ++ + QQ G N LD ++ + SLAE
Sbjct: 92 VSELAGLLSAMEYVQKTLTDEELADWKRRQQI--ACIGGPPNICLDRLENWITSLAESQL 149
Query: 157 MTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP------ 210
TRQQIK+ E L+ +S +V P L +I + +L+ S F++E+QP
Sbjct: 150 QTRQQIKKLEELQQKVS--YKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHP 207
Query: 211 --PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVIIR 244
P V+KT +F+ VRLL +LN + I +
Sbjct: 208 DRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDK 244
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 93.4 bits (231), Expect = 4e-22
Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 16/206 (7%)
Query: 49 QQLQERRRLEAEE---EVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSH 105
+ LQ+ + + E G + L K + L + + V L +
Sbjct: 29 EDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNV 88
Query: 106 DPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEA 165
I L + R Q G N LD +Q + +AE + RQQ+K+
Sbjct: 89 TELTQNALINDELVEWKRRQQSA---CIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKL 145
Query: 166 ERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQVMKTN 217
E L+ + + + L + L+ S+F++E+QP P V+KT
Sbjct: 146 EELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLVLKTG 203
Query: 218 TRFSATVRLLTGSKLNVYMTPPQVII 243
+F+ +RLL + Y +V+
Sbjct: 204 VQFTVKLRLLVKLQELNYNLKVKVLF 229
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 91.9 bits (227), Expect = 2e-21
Identities = 38/212 (17%), Positives = 76/212 (35%), Gaps = 15/212 (7%)
Query: 44 KWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQ--EMRIVQQNDPH 101
+ K + LQ+ + + + + D + ++ R +
Sbjct: 159 EIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKII 218
Query: 102 LYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQ 161
+ + E + QQ G N LD +Q + +AE + RQQ
Sbjct: 219 ELLNVTELTQNALINDELVEWKRRQQ--SACIGGPPNACLDQLQNWFTIVAESLQQVRQQ 276
Query: 162 IKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTSTFIIEKQP--------PQV 213
+K+ E L+ + + + L + L+ S+F++E+QP P V
Sbjct: 277 LKKLEELEQKYT--YEHDPITKNKQVLWDRTFSLFQQLIQSSFVVERQPCMPTHPQRPLV 334
Query: 214 MKTNTRFSATVRLLTGSK-LNVYMTPPQVIIR 244
+KT +F+ +RLL + LN + + +
Sbjct: 335 LKTGVQFTVKLRLLVKLQELNYNLKVKVLFDK 366
Score = 41.8 bits (97), Expect = 1e-04
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
LL L R ++ + E + E TQ ++N EL++WKR QQ
Sbjct: 197 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSAC 247
Score = 29.9 bits (66), Expect = 0.87
Identities = 12/76 (15%), Positives = 30/76 (39%)
Query: 92 MRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESL 151
+R ++N + DP + I +CL +E +I++ + N ++ + L
Sbjct: 83 IRKSKRNLQDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSGNIQSTVMLDKQKEL 142
Query: 152 AEIIWMTRQQIKEAER 167
+ + ++ E
Sbjct: 143 DSKVRNVKDKVMCIEH 158
Score = 27.9 bits (61), Expect = 3.6
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 70 EHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDP 107
+ + DP + I +CL +E +I++ +
Sbjct: 91 QDNFQEDPIQMSMIIYSCLKEERKILENAQRFNQAQSG 128
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 60.8 bits (146), Expect = 6e-11
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 149 ESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQCLSHLVTS-----T 203
++ + + I E L L + D L L+ +I L+ ++
Sbjct: 70 TEMSALDATKKGMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNPQHSAPKPNVA 129
Query: 204 FIIEKQP-PQVMKTNTRFSA---TVRLLTGSKLNVYMTPP 239
+++ QP P V+ + V +LTG++ N ++ P
Sbjct: 130 LVLKSQPFPVVISKGKQLGENQLVVLVLTGARSNFHINGP 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 3e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 159 RQQIKEAE-RLKNLISKYVDPPNMVDVLPNL--NAQI 192
+Q +K+ + LK Y D D P L A +
Sbjct: 19 KQALKKLQASLK----LYAD-----DSAPALAIKATM 46
Score = 32.2 bits (72), Expect = 0.071
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 18/46 (39%)
Query: 48 EQQLQERRRLEAEEEVEEDIGKEHLYSHD--PRALFKTIQACLTQE 91
E+Q ++L+A + LY+ D P AL I+A T E
Sbjct: 18 EKQ--ALKKLQASLK---------LYADDSAP-AL--AIKA--TME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 6e-04
Identities = 38/226 (16%), Positives = 69/226 (30%), Gaps = 79/226 (34%)
Query: 25 ETCFLIENTQGK-I--LNVELLKWKREQQLQERRRL-----EAEEEVEEDIGKEHLYSHD 76
E C+L +G I L +LL+ + + L + + L A + K+
Sbjct: 92 ENCYL----EGNDIHALAAKLLQ-ENDTTLVKTKELIKNYITARIMAKRPFDKKS----- 141
Query: 77 PRALFKTIQA-----------------CLTQEMRIVQQNDPHLYSHDPRALFKTIQACLT 119
ALF+ + +E+R + Q Y L K L+
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYF-EELRDLYQ----TYHVLVGDLIKFSAETLS 196
Query: 120 QEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK-EAERLKN------LI 172
+ +R + V + L++++ W+ + + L + LI
Sbjct: 197 ELIRTTLDAEKV-----FTQGLNILE----------WLENPSNTPDKDYLLSIPISCPLI 241
Query: 173 -----SKYV--------DPPNMVDVLPNLNAQITQCLSHLVTSTFI 205
+ YV P + L T LVT+ I
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGA----TGHSQGLVTAVAI 283
Score = 37.3 bits (86), Expect = 0.004
Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 87/218 (39%)
Query: 24 KETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDI---GKEH-L--YSHDP 77
K + TQ + +E + L+++ + D G H L Y+
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAF---------EDLKSKGLIPADATFAG--HSLGEYA--- 1768
Query: 78 RALFKTIQACLTQEM------RIVQQ----------NDPHLYSH------DPRALFKTIQ 115
AL A L M +V D S+ +P +
Sbjct: 1769 -AL-----ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP----GRVA 1818
Query: 116 ACLTQEM--RIVQQNDPVSNG----ARYNCTLDMIQGYCESLAEIIWMTRQQI-----KE 164
A +QE +V++ + YN + QQ
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNV-----EN-------------QQYVAAGDLR 1860
Query: 165 A-ERLKNLISKYVDPPNMVDVLPNLNAQIT--QCLSHL 199
A + + N++ ++ +D++ L ++ + HL
Sbjct: 1861 ALDTVTNVL-NFIKLQK-IDIIE-LQKSLSLEEVEGHL 1895
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.006
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 44 KWKREQQLQERRRLEAEEEVEEDI---GKEHL---YSHDPRALFKTIQACLTQEMRIVQQ 97
KW+ EQ+ + + A + +E++ K+ L + K + QQ
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Query: 98 ND 99
D
Sbjct: 149 PD 150
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 35.8 bits (82), Expect = 0.011
Identities = 13/62 (20%), Positives = 26/62 (41%)
Query: 39 NVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQN 98
VEL K KR++ L +RR + + ++ + + +Q L Q + + +
Sbjct: 40 QVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSD 99
Query: 99 DP 100
D
Sbjct: 100 DM 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.012
Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 45/240 (18%)
Query: 1 MDQLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQ-------LQE 53
M Q L +I + +D+ I + Q ++ LLK K + +Q
Sbjct: 201 MLQKLLYQID---PNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQN 255
Query: 54 RRRLEAEEEVEEDIG-KEHLYSHDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFK 112
+ A ++ K L + + + + A T + + + L + ++L
Sbjct: 256 AKAWNA-----FNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLL 308
Query: 113 TIQACLTQEM-RIVQQNDP--VSN-GARYNCTLDMIQGY----CESLAEIIWMTRQQIKE 164
C Q++ R V +P +S L + C+ L II + ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 165 AERLKNLISKYVD----PPN---MVDVLPNL-NAQITQC----LSHLVTSTFIIEKQPPQ 212
AE + + + PP+ +L + I ++ L + ++EKQP +
Sbjct: 369 AE-YRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKE 423
Score = 34.8 bits (79), Expect = 0.026
Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 53/224 (23%)
Query: 24 KETCFLIENTQGKILNVELLKWKREQQLQERRRLEAEEEVEEDIGKEH--LYSHDPRALF 81
KE I ++ + L W + QE ++ VEE + + L S
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSK-QEE---MVQKFVEEVLRINYKFLMS---PIKT 100
Query: 82 KTIQACLTQEMRIVQ----QNDPHLYS--HDPRA-LFKTIQACLTQEMRIVQQNDPVSN- 133
+ Q + M I Q ND +++ + R + ++ L E+R P N
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELR------PAKNV 153
Query: 134 ------GARYNC-TLDMIQGY---CESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVD 183
G+ LD+ Y C+ +I W+ + P +++
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-------------LKNCNSPETVLE 200
Query: 184 VLPNLNAQITQCLSHLVTSTFIIEKQPPQVMKTNTRFSATVRLL 227
+L L QI + + I K ++ R RLL
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELR-----RLL 238
Score = 32.1 bits (72), Expect = 0.16
Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 44/197 (22%)
Query: 58 EAEEEVEEDI-------------GKEHLYS-HD-----------PRALFKTI------QA 86
+ + + KE S AL ++I
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 87 CLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDP-VSNGARYNCTLDMIQ 145
+ I D + YSH L R+V + + R++ T
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 146 GYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQITQ----CLSHLVT 201
G + + + + I + + + V+ ++D LP + + L +
Sbjct: 518 GSILNTLQQLKFYKPYICDND---PKYERLVN--AILDFLPKIEENLICSKYTDLLRIAL 572
Query: 202 ST---FIIEKQPPQVMK 215
I E+ QV +
Sbjct: 573 MAEDEAIFEEAHKQVQR 589
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus
musculus} SCOP: a.90.1.1
Length = 124
Score = 33.1 bits (75), Expect = 0.027
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 92 MRIVQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQND 129
++ +++ + +P + I CL +E RI+ +
Sbjct: 84 LKRIRKVLQGKFHGNPMHVAVVISNCLREERRILAAAN 121
Score = 31.9 bits (72), Expect = 0.062
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 70 EHLYSHDPRALFKTIQACLTQEMRIVQQND 99
+ + +P + I CL +E RI+ +
Sbjct: 92 QGKFHGNPMHVAVVISNCLREERRILAAAN 121
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 2.7
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 44 KWKREQQLQERRRLEAEEEVEEDI---GKEHL---YSHDPRALFKTIQACLTQEMRIVQQ 97
KW+ EQ+ + + A + +E++ K+ L + K + QQ
Sbjct: 104 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 163
Query: 98 NDP 100
D
Sbjct: 164 PDA 166
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus
musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A
3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C
3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.1 bits (62), Expect = 2.8
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 40 VELLKWKREQQLQERRRLEAEEEVEED 66
E K E+Q + L +++ +
Sbjct: 19 KETAAAKFERQHMDSPDLGTDDDDKAM 45
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 25.5 bits (56), Expect = 3.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 39 NVELLKWKREQQLQERRRL 57
NVEL K K++ Q+ +RR +
Sbjct: 25 NVELRKAKKDDQMLKRRNV 43
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 27.1 bits (60), Expect = 4.2
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 40 VELLKWKREQQLQERRRLEAEEEVEE 65
VE++ + ++ + R + EE +
Sbjct: 153 VEVIGFDETKEGKARSDMTVEERIGA 178
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein,
structural genomics, PSI, protein struct initiative;
2.90A {Legionella pneumophila} SCOP: c.108.1.23
Length = 470
Score = 26.9 bits (59), Expect = 7.5
Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 33 TQGKILNVE---LLKWKREQQLQ---ERRRLEAEEEVEEDIGKEHLYSHDPR-----ALF 81
+G +++ + +LK R ++ + + + ++ ++ DP F
Sbjct: 69 IRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDLGDPNYMAIDTSF 128
Query: 82 KTIQACLTQEMRIVQQNDPHL-YSHDPRALFKTIQACL 118
L ++V D + +A+ + +Q C+
Sbjct: 129 SIAFCILY--GQLVDLKDTNPDKMPSYQAIAQDVQYCV 164
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 26.3 bits (58), Expect = 9.0
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 92 MRIVQQNDPHLYSHDPRAL 110
M + +D H S +
Sbjct: 1 MLLAHISDTHFRSRGEKLY 19
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate
mutase domain, chorismate mutase; HET: TSA; 2.20A
{Escherichia coli} SCOP: a.130.1.1
Length = 109
Score = 25.4 bits (56), Expect = 9.1
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 46 KREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTI-QACLTQEMRIVQQNDPHLYS 104
RE+ L ER + HL +H LF+ I + + + ++QQ+ +
Sbjct: 50 DRERDLLERLITLGKA--------HHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINP 101
Query: 105 HDPRALF 111
H R F
Sbjct: 102 HSARIAF 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,620,053
Number of extensions: 205765
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 49
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)