RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15310
(244 letters)
>d1bf5a2 b.2.5.5 (A:317-568) STAT-1, DNA-binding domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 252
Score = 59.5 bits (144), Expect = 3e-11
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 204 FIIEKQP--------PQVMKTNTRFSATVRLLTGSKLNVYMTPPQVII 243
F++E+QP P V+KT +F+ +RLL + Y +V+
Sbjct: 1 FVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVKLQELNYNLKVKVLF 48
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 186
Score = 58.0 bits (140), Expect = 4e-11
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
G N LD ++ + SLAE TRQQIK+ E L+ +S DP +V P L +I
Sbjct: 117 IGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDP--IVQHRPMLEERI 174
Query: 193 TQCLSHLVTSTF 204
+ +L+ S F
Sbjct: 175 VELFRNLMKSAF 186
Score = 36.4 bits (84), Expect = 0.001
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQE 53
Q L + AL Q R + L +E Q + + EL WKR QQ+
Sbjct: 66 QQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIAC 116
>d1bg1a2 b.2.5.5 (A:322-575) STAT3b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 254
Score = 55.3 bits (133), Expect = 7e-10
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 205 IIEKQP--------PQVMKTNTRFSATVRLLTGS-KLNVYMTPPQVIIR 244
++E+QP P V+KT +F+ VRLL +LN + I +
Sbjct: 1 VVERQPCMPMHPDRPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDK 49
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 51.8 bits (124), Expect = 6e-09
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 133 NGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAERLKNLISKYVDPPNMVDVLPNLNAQI 192
G N LD +Q + +AE + RQQ+K+ E L+ + DP + L +
Sbjct: 113 IGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP--ITKNKQVLWDRT 170
Query: 193 TQCLSHLVTST 203
L+ S+
Sbjct: 171 FSLFQQLIQSS 181
Score = 34.5 bits (79), Expect = 0.005
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 3 QLLNTKIKALGQDRCQLADNLKETCFLIENTQGKILNVELLKWKREQQLQER 54
LL L R ++ + E + E TQ ++N EL++WKR QQ
Sbjct: 62 LLLKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACI 113
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 33.1 bits (74), Expect = 0.030
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 39 NVELLKWKREQQLQERRRLEAEEEVEEDIGKEHLYSHDPRALFKTIQACLTQEMRIVQQN 98
VEL K KR++ L +RR + + ++ + + +Q L Q + + +
Sbjct: 29 QVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSD 88
Query: 99 DPHL 102
D
Sbjct: 89 DMQE 92
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 124
Score = 31.3 bits (71), Expect = 0.040
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 72 LYSHDPRALFKTIQACLTQEMRIVQQ 97
+ +P + I CL +E RI+
Sbjct: 94 KFHGNPMHVAVVISNCLREERRILAA 119
Score = 31.3 bits (71), Expect = 0.040
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 102 LYSHDPRALFKTIQACLTQEMRIVQQ 127
+ +P + I CL +E RI+
Sbjct: 94 KFHGNPMHVAVVISNCLREERRILAA 119
>d1h5wa_ e.27.1.1 (A:) Upper collar protein gp10 (connector protein)
{Bacteriophage phi-29 [TaxId: 10756]}
Length = 268
Score = 28.7 bits (64), Expect = 0.58
Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 27/135 (20%)
Query: 75 HDPRALFKTIQACLTQEMRIVQQNDPHLYSHDPRALFKTIQACLTQEMR-----IVQQND 129
DP + L+ + + N ++ K + ++M+ +V N+
Sbjct: 51 KDPVISYIACNGALSGQRDV--YNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNN 108
Query: 130 PVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIKEAER--------------LKNLISKY 175
+ T ++ + LAE+ + A++ LK + ++Y
Sbjct: 109 DM-----AFPTTPTLELFAAELAELK-EIISVNQNAQKTPVLIRANDNNQLSLKQVYNQY 162
Query: 176 VDPPNMVDVLPNLNA 190
++ L++
Sbjct: 163 EGNAPVIFAHEALDS 177
>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog
{Mycobacterium smegmatis [TaxId: 1772]}
Length = 141
Score = 26.6 bits (58), Expect = 1.7
Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 109 ALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEIIWMTRQQIK 163
++ + + + ++ D VS D++ + L + W R ++
Sbjct: 95 LVYNGVIEDTRKSIEKLEDLDLVSQ--------DLLIAHAGELEKFQWFVRAHLE 141
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus
suis [TaxId: 1307]}
Length = 151
Score = 26.6 bits (58), Expect = 1.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 140 TLDMIQGYCESLAEIIWMTRQQIKEAERL 168
T D+ S+ + IWM + ++ +A +L
Sbjct: 123 TNDIFNVAKASIEKHIWMLQAELGQAPKL 151
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
desaturase {Castor bean (Ricinus communis) [TaxId:
3988]}
Length = 345
Score = 25.6 bits (56), Expect = 6.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 55 RRLEAEEEVEEDIGKEHLY---SHDPRALFKTIQACLTQEMRIVQQNDPHL 102
R AEE D+ ++LY D R + KTIQ + M +N P+L
Sbjct: 119 RAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYL 169
>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon
Halobacterium salinarum [TaxId: 2242]}
Length = 180
Score = 25.1 bits (54), Expect = 7.1
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 140 TLDMIQGYCESLAEIIWMTRQQIKE 164
T M++ L + +++
Sbjct: 147 TAHMLREGLIELEDDAHHIEHYLED 171
>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium
tumefaciens, Dps [TaxId: 358]}
Length = 162
Score = 25.0 bits (54), Expect = 7.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 140 TLDMIQGYCESLAEIIWMTRQQIKE 164
T D+ L + +W ++E
Sbjct: 136 TADIFTAASRDLDKSLWFLEAHVQE 160
>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria
innocua [TaxId: 1642]}
Length = 150
Score = 24.6 bits (53), Expect = 7.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 140 TLDMIQGYCESLAEIIWMTRQQIKEA 165
T DM+ + S+ + IWM + + +A
Sbjct: 122 TNDMLIAFKASIDKHIWMFKAFLGKA 147
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 24.9 bits (54), Expect = 8.8
Identities = 8/65 (12%), Positives = 16/65 (24%)
Query: 95 VQQNDPHLYSHDPRALFKTIQACLTQEMRIVQQNDPVSNGARYNCTLDMIQGYCESLAEI 154
+NDP AL + + + + ++ I+ I
Sbjct: 94 FIENDPKAKYWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLELAIRKLYGYNLSI 153
Query: 155 IWMTR 159
I
Sbjct: 154 IPYFA 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.386
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,867
Number of extensions: 39938
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 29
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)