BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15312
(124 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D34|A Chain A, Structure Of The F-Spondin Domain Of Mindin
pdb|3D34|B Chain B, Structure Of The F-Spondin Domain Of Mindin
Length = 223
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD GFTF+SP++A + V I ++P P SFYY L LP +A+ + ++++
Sbjct: 162 DAGTDSGFTFSSPNFATIPQDTVTEITSSSPSHPANSFYYPRLKALPPIARVTLLRLRQ 220
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 3 AGTDQGFTFTSPDYANEEPEP-VFRIGLTTPDE 34
AG+D+ F + + DYA+E P+P I TP+E
Sbjct: 88 AGSDRSFVWHALDYADELPKPEQLAIRFKTPEE 120
>pdb|3Q13|A Chain A, The Structure Of The Ca2+-Binding, Glycosylated F-Spondin
Domain Of F- Spondin, A C2-Domain Variant From
Extracellular Matrix
Length = 258
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 1 MDAGTDQGFTFTSPD---YANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITK 57
DAGTD G T+ SP+ E+ P LT+ D P FY + +A+ VI +
Sbjct: 169 WDAGTDSGVTYESPNKPTIPQEKIRP-----LTSLDHPQSPFYDPEGGSITQVARVVIER 223
Query: 58 VQEYTTKTNKAEHNKED 74
+ + N N +D
Sbjct: 224 IARKGEQCNIVPDNVDD 240
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 68 AEHNKEDKSNNETSTVSGI----LNNKNQTENDTKNELSVHDKTTEKTYEDENEKGDTN 122
EH + V+G+ LN + T+ND++N VH E YE KG TN
Sbjct: 192 GEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTN 250
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 68 AEHNKEDKSNNETSTVSGI----LNNKNQTENDTKNELSVHDKTTEKTYEDENEKGDTN 122
EH + V+G+ LN + T+ND++N VH E YE KG TN
Sbjct: 191 GEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTN 249
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 68 AEHNKEDKSNNETSTVSGI----LNNKNQTENDTKNELSVHDKTTEKTYEDENEKGDTN 122
EH + V+G+ LN + T+ND++N VH E YE KG TN
Sbjct: 191 GEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTN 249
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex
pdb|1SFC|H Chain H, Neuronal Synaptic Fusion Complex
pdb|1SFC|L Chain L, Neuronal Synaptic Fusion Complex
Length = 87
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 65 TNKAEHNKEDKSNNETSTVSGILNNKNQTENDTKNELSVHDKTTEKTYEDENEKGDTNK 123
TN A N+ D++ VSGI+ N D NE+ ++ ++ EK D+NK
Sbjct: 19 TNDARENEMDEN---LEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIM----EKADSNK 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.302 0.123 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,185,560
Number of Sequences: 62578
Number of extensions: 164910
Number of successful extensions: 291
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 28
length of query: 124
length of database: 14,973,337
effective HSP length: 85
effective length of query: 39
effective length of database: 9,654,207
effective search space: 376514073
effective search space used: 376514073
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 45 (21.9 bits)