BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15312
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens GN=SPON2 PE=1 SV=3
Length = 331
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD GFTF+SP++A + V I ++P P SFYY L LP +A+ + ++++
Sbjct: 188 DAGTDSGFTFSSPNFATIPQDTVTEITSSSPSHPANSFYYPRLKALPPIARVTLVRLRQ 246
>sp|Q8BMS2|SPON2_MOUSE Spondin-2 OS=Mus musculus GN=Spon2 PE=1 SV=2
Length = 330
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD GFTF+SP++A + V I ++P P SFYY L LP +A+ ++Q+
Sbjct: 187 DAGTDSGFTFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLQQ 245
>sp|Q9WV75|SPON2_RAT Spondin-2 OS=Rattus norvegicus GN=Spon2 PE=1 SV=1
Length = 330
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD GFTF+SP++A + V I ++P P SFYY L LP +A+ ++++
Sbjct: 187 DAGTDSGFTFSSPNFATIPQDTVTEITASSPSHPANSFYYPRLKSLPPIAKVTFVRLRQ 245
>sp|P35446|SPON1_RAT Spondin-1 OS=Rattus norvegicus GN=Spon1 PE=1 SV=1
Length = 807
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRI-GLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD G T+ SP N+ P +I LT+ D P FY + +A+ VI ++
Sbjct: 354 DAGTDSGVTYESP---NKPTIPQEKIRPLTSLDHPQSPFYDPEGGSITQVARVVIERIAR 410
Query: 61 YTTKTNKAEHNKED 74
+ N N +D
Sbjct: 411 KGEQCNIVPDNVDD 424
>sp|Q8VCC9|SPON1_MOUSE Spondin-1 OS=Mus musculus GN=Spon1 PE=2 SV=1
Length = 807
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRI-GLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD G T+ SP N+ P +I LT+ D P FY + +A+ VI ++
Sbjct: 354 DAGTDSGVTYESP---NKPTIPQEKIRPLTSLDHPQSPFYDPEGGSITQVARVVIERIAR 410
Query: 61 YTTKTNKAEHNKED 74
+ N N +D
Sbjct: 411 KGEQCNIVPDNVDD 424
>sp|Q9GLX9|SPON1_BOVIN Spondin-1 OS=Bos taurus GN=SPON1 PE=1 SV=1
Length = 807
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEY 61
DAGTD G T+ SP+ E + LT+ D P FY + +A+ VI ++
Sbjct: 354 DAGTDSGVTYESPNKPTIPQEKIRP--LTSLDHPQSPFYDPEGGSITQVARVVIERIARK 411
Query: 62 TTKTNKAEHNKED 74
+ N N +D
Sbjct: 412 GEQCNIVPDNVDD 424
>sp|Q9HCB6|SPON1_HUMAN Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2
Length = 807
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRI-GLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
DAGTD G T+ SP N+ P +I LT+ D P FY + +A+ VI ++
Sbjct: 354 DAGTDSGVTYESP---NKPTIPQEKIRPLTSLDHPQSPFYDPEGGSITQVARVVIERIAR 410
Query: 61 YTTKTNKAEHNKED 74
+ N N +D
Sbjct: 411 KGEQCNIVPDNVDD 424
>sp|Q9W770|SPON1_CHICK Spondin-1 OS=Gallus gallus GN=SPON1 PE=2 SV=1
Length = 802
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 2 DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEY 61
DAGTD G T+ SP+ E + LT+ D P FY + +A+ V+ ++
Sbjct: 349 DAGTDSGVTYESPNKPTVPQEKIR--PLTSLDHPQSPFYDPEGGSIKLVARVVLERIARK 406
Query: 62 TTKTNKAEHNKED 74
+ N N +D
Sbjct: 407 GEQCNFVPDNIDD 419
>sp|Q00737|SUDA_EMENI Chromosome segregation protein sudA OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=sudA PE=2 SV=3
Length = 1215
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 44 LTVLPTMAQFVITKVQEYTTKTNKAEHNK----EDKSNNET-STVSGILNNKNQTENDTK 98
LT T Q + K + NK+E +K E K+NN + S+V +L+ + ND +
Sbjct: 365 LTEAETARQRLYAKQGRNSRFKNKSERDKWLQAEIKNNNASISSVQSVLSQTQEDINDIE 424
Query: 99 NELSVHDKTTEKTYEDENEKGDT 121
N++++ + TE+ + + +GDT
Sbjct: 425 NDIALLEPETERLRQQIDGRGDT 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.123 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,330,557
Number of Sequences: 539616
Number of extensions: 2147367
Number of successful extensions: 25738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 10792
Number of HSP's gapped (non-prelim): 10591
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)