Query psy15312
Match_columns 124
No_of_seqs 90 out of 92
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 17:49:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3539|consensus 99.9 1E-27 2.2E-32 210.1 1.8 80 1-80 277-356 (508)
2 PF06468 Spond_N: Spondin_N; 99.8 4.3E-22 9.3E-27 155.6 2.1 49 1-49 148-196 (196)
3 KOG3539|consensus 97.6 4.4E-05 9.5E-10 68.5 2.8 75 1-78 39-114 (508)
4 COG2947 Uncharacterized conser 49.2 15 0.00032 29.3 2.3 42 6-49 46-93 (156)
5 cd01327 KAZAL_PSTI Kazal-type 28.0 22 0.00049 21.8 0.3 10 4-14 14-23 (45)
6 PF11730 DUF3297: Protein of u 21.9 34 0.00073 24.2 0.3 12 33-44 6-17 (71)
7 COG0278 Glutaredoxin-related p 21.9 40 0.00087 25.3 0.7 11 14-24 67-77 (105)
8 KOG0961|consensus 21.8 7.2 0.00016 38.1 -4.0 60 4-65 143-205 (1022)
9 cd00104 KAZAL_FS Kazal type se 21.7 34 0.00074 19.6 0.2 11 4-15 10-20 (41)
10 PF13005 zf-IS66: zinc-finger 21.3 78 0.0017 18.7 1.8 19 46-65 25-43 (47)
No 1
>KOG3539|consensus
Probab=99.93 E-value=1e-27 Score=210.12 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=72.9
Q ss_pred CCccCCCCCCccCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCCceEEEEEEEeeeeccccccCCCCcccCCcee
Q psy15312 1 MDAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEYTTKTNKAEHNKEDKSNNET 80 (124)
Q Consensus 1 wDAGTDSG~TY~SPN~pT~P~e~I~rITS~~P~hPaspFYyP~~~~LpPiArl~l~R~r~y~~~~~~~~~~~~~~~n~~~ 80 (124)
||||||||||||||||||+||++|++||+.+|.||+||||||+++.|||||+|+|+|+++|++.|++-..-.+...|.+.
T Consensus 277 ~DAGTDsG~ty~spn~pteP~~~i~~ITs~~p~~P~s~FY~pks~~lpplAt~~l~r~~~~e~nc~edd~~~~~~~~~~~ 356 (508)
T KOG3539|consen 277 WDAGTDSGFTYMSPNSPTEPQDVIYRITSPYPLHPASPFYDPKSKCLPPLATVQLRRKKLYELNCNEDDEQAEKCMNPTH 356 (508)
T ss_pred cccCCCCCccccCCCCCCCCCCCceEeccCCCCCCcccccCcccccCCchhhhhHHHhhhhhhccCcchHHHhhhcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998876555555554433
No 2
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=99.84 E-value=4.3e-22 Score=155.65 Aligned_cols=49 Identities=39% Similarity=0.687 Sum_probs=28.8
Q ss_pred CCccCCCCCCccCCCCCCCCCCcceecccCCCCCCCCCCCCCCCCCCCC
Q psy15312 1 MDAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPT 49 (124)
Q Consensus 1 wDAGTDSG~TY~SPN~pT~P~e~I~rITS~~P~hPaspFYyP~~~~LpP 49 (124)
||||||+|++|+|||+|++||++|++||+.+|+||+||||||+|++|||
T Consensus 148 yDAGTe~g~e~~s~~~~~~P~~~I~~it~~~p~~p~spFy~~~~~~~~p 196 (196)
T PF06468_consen 148 YDAGTESGDEYTSPNSPTEPQQPIRRITSSYPNHPASPFYYPRGKPLPP 196 (196)
T ss_dssp EE-SSB---STT----B-SS----EE--TSSTSSTTSTT--TTSSS---
T ss_pred eeccccCCCceeCCCCCCCCCcceEeccCCCCCCCCCCCcCCCCCcCCC
Confidence 8999999999999999999999999999999999999999999999998
No 3
>KOG3539|consensus
Probab=97.57 E-value=4.4e-05 Score=68.53 Aligned_cols=75 Identities=20% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCccCCCCCCccCCCCCC-CCCCcceecccCCCCCCCCCCCCCCCCCCCCceEEEEEEEeeeeccccccCCCCcccCCc
Q psy15312 1 MDAGTDQGFTFTSPDYAN-EEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEYTTKTNKAEHNKEDKSNN 78 (124)
Q Consensus 1 wDAGTDSG~TY~SPN~pT-~P~e~I~rITS~~P~hPaspFYyP~~~~LpPiArl~l~R~r~y~~~~~~~~~~~~~~~n~ 78 (124)
|++|+|+|.|+.||+-|+ ++++++++.|+. +++-.+||.| ++-+-=.|+|.+.|..-+...++.+....++.+--
T Consensus 39 w~v~~~~~~t~~sP~c~~~V~~~~~~~kT~v--~~~w~ape~~-~Gci~l~A~v~e~r~~~~~dd~~l~~~l~~~~~~a 114 (508)
T KOG3539|consen 39 WQVGTDSGVTRFSPRCPNSVENANDRPKTSV--DVMWVAPESP-SGCITLRARVMENRIAWFTDDGNLVPDLCETKVAA 114 (508)
T ss_pred ceeccCccceeeCCCCccccccCCCCccccc--cceeecCCCC-CcceEEeeeeccccceecccCCCcchhhhhhhhhc
Confidence 899999999999999999 999999999997 7999999999 88888999999999999999888887766655433
No 4
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=49.21 E-value=15 Score=29.34 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCCCCccCC-CCCCCCCCcceeccc-CCCC----CCCCCCCCCCCCCCCC
Q psy15312 6 DQGFTFTSP-DYANEEPEPVFRIGL-TTPD----EPYGSFYYKNLTVLPT 49 (124)
Q Consensus 6 DSG~TY~SP-N~pT~P~e~I~rITS-~~P~----hPaspFYyP~~~~LpP 49 (124)
|.||-|-|- ..|-+ --|-+|.+ ++|+ ||+||+|+|...+=.|
T Consensus 46 D~~fFYHSNc~~pgI--vGl~~V~~~a~pD~tq~d~~spYyDPka~~e~p 93 (156)
T COG2947 46 DLGFFYHSNCKPPGI--VGLAEVCALAHPDPTQFDPASPYYDPKATPEDP 93 (156)
T ss_pred ceEEEEecCCCCCCc--eehhhhhhccCCCccccCCCCcccCcccccCCC
Confidence 667777765 22221 12334433 3443 7899999999987665
No 5
>cd01327 KAZAL_PSTI Kazal-type pancreatic secretory trypsin inhibitors (PSTI) and related proteins, including the second domain of the ovomucoid turkey inhibitor and the C-terminal domain of the esophagus cancer-related gene-2 protein (ECRG-2), are members of the superfamily of kazal-type proteinase inhibitors and follistatin-like proteins.
Probab=28.02 E-value=22 Score=21.80 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=7.3
Q ss_pred cCCCCCCccCC
Q psy15312 4 GTDQGFTFTSP 14 (124)
Q Consensus 4 GTDSG~TY~SP 14 (124)
|+| |.||.++
T Consensus 14 GsD-g~TY~N~ 23 (45)
T cd01327 14 GTD-GVTYSNE 23 (45)
T ss_pred CCC-CCEeCCH
Confidence 666 7888775
No 6
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=21.95 E-value=34 Score=24.22 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCC
Q psy15312 33 DEPYGSFYYKNL 44 (124)
Q Consensus 33 ~hPaspFYyP~~ 44 (124)
.+|+||||+...
T Consensus 6 ~~P~Sp~~~~~~ 17 (71)
T PF11730_consen 6 INPRSPHYDAEV 17 (71)
T ss_pred cCCCChhhHHHH
Confidence 489999998754
No 7
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=40 Score=25.35 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=8.4
Q ss_pred CCCCCCCCCcc
Q psy15312 14 PDYANEEPEPV 24 (124)
Q Consensus 14 PN~pT~P~e~I 24 (124)
.||||.||--|
T Consensus 67 s~WPT~PQLyi 77 (105)
T COG0278 67 SNWPTFPQLYV 77 (105)
T ss_pred cCCCCCceeeE
Confidence 48999998543
No 8
>KOG0961|consensus
Probab=21.83 E-value=7.2 Score=38.11 Aligned_cols=60 Identities=20% Similarity=0.399 Sum_probs=41.7
Q ss_pred cCCCCCCccCC-CCCCCCCCccee--cccCCCCCCCCCCCCCCCCCCCCceEEEEEEEeeeeccc
Q psy15312 4 GTDQGFTFTSP-DYANEEPEPVFR--IGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEYTTKT 65 (124)
Q Consensus 4 GTDSG~TY~SP-N~pT~P~e~I~r--ITS~~P~hPaspFYyP~~~~LpPiArl~l~R~r~y~~~~ 65 (124)
|-|+|+-|+-= +-.++--..+.+ =++.|| |-|++|+..|+.++-+.++++.++|.|.+++
T Consensus 143 g~d~GVVySEMq~~es~~~~im~~~~~~~~yP--~~sgY~~eTGG~~knLR~lt~ekIR~yHK~~ 205 (1022)
T KOG0961|consen 143 GNDAGVVYSEMQDHESEMESIMDRKTKEVIYP--PFSGYAVETGGRLKNLRELTLEKIRDYHKKF 205 (1022)
T ss_pred CCccceeehhhhhhhcccchhhhhhhheeecC--CCCCceeccCCChhhHHHhhHHHHHHHHHHh
Confidence 66888887421 111111112222 234566 7899999999999999999999999999874
No 9
>cd00104 KAZAL_FS Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the cognate enzyme as substrate. The reactive site peptide bond is a combining loop which has an identical conformation in all Kazal inhibitors and in all enzyme/inhibitor complexes. These Kazal domains (small hydrophobic core of alpha/beta structure with 3 to 4 disulfide bonds) often occur in tandem arrays. Similar domains are also present in follistatin (FS) and follistatin-like family members, which play an important role in tissue specific regulation. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a Kazal-like domain and has five disulfide bonds. Although the Kazal-like FS substructure is similar to Kazal proteinase inhibitors, no FS domain has yet been shown to be a proteinase inhibitor.
Probab=21.70 E-value=34 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=6.9
Q ss_pred cCCCCCCccCCC
Q psy15312 4 GTDQGFTFTSPD 15 (124)
Q Consensus 4 GTDSG~TY~SPN 15 (124)
|+ +|+||.|+=
T Consensus 10 gs-dg~tY~n~C 20 (41)
T cd00104 10 GS-DGKTYSNEC 20 (41)
T ss_pred CC-CCCEECCHh
Confidence 44 478887753
No 10
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=21.32 E-value=78 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=13.4
Q ss_pred CCCCceEEEEEEEeeeeccc
Q psy15312 46 VLPTMAQFVITKVQEYTTKT 65 (124)
Q Consensus 46 ~LpPiArl~l~R~r~y~~~~ 65 (124)
+|+| |++.+++..++...|
T Consensus 25 ~~~p-~~~~V~e~~~~~y~C 43 (47)
T PF13005_consen 25 DLPP-AKPEVTEHVRHKYAC 43 (47)
T ss_pred eecc-cceEEEEEEeceEEC
Confidence 4667 788888777766655
Done!