RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15312
         (124 letters)



>gnl|CDD|219042 pfam06468, Spond_N, Spondin_N.  This conserved region is found at
           the in the N-terminal half of several Spondin proteins.
           Spondins are involved in patterning axonal growth
           trajectory through either inhibiting or promoting
           adhesion of embryonic nerve cells.
          Length = 197

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 19/47 (40%), Positives = 25/47 (53%)

Query: 2   DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLP 48
           DAGTD GFT++SP++     E + RI  + P  P   FY      LP
Sbjct: 150 DAGTDSGFTYSSPNFPTIPQEKIRRITSSYPSHPASPFYDPRGKELP 196


>gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain,
           uncharacterized subfamily 7.  This family is a member of
           the Peptidases S8 or Subtilases serine endo- and
           exo-peptidase clan. They have an Asp/His/Ser catalytic
           triad similar to that found in trypsin-like proteases,
           but do not share their three-dimensional structure and
           are not homologous to trypsin. The stability of
           subtilases may be enhanced by calcium, some members have
           been shown to bind up to 4 ions via binding sites with
           different affinity. Some members of this clan contain
           disulfide bonds. These enzymes can be intra- and
           extracellular, some function at extreme temperatures and
           pH values.
          Length = 247

 Score = 27.7 bits (62), Expect = 1.4
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 2   DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPD 33
           D G   G T+  P       + +FRIG    D
Sbjct: 145 DQGAFTGDTYPPPAA----RDRIFRIGAADED 172


>gnl|CDD|227659 COG5361, COG5361, Uncharacterized conserved protein [Function
           unknown].
          Length = 458

 Score = 26.6 bits (59), Expect = 3.8
 Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)

Query: 3   AGTDQG----FTFTSPDYANEEPEPVFRIGLTTPD 33
            G D G    +    P Y  + PE    I   TP 
Sbjct: 130 TGPDGGKGGKYLILPPGYKGDVPEGYRVIRSPTPL 164


>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
          Length = 413

 Score = 26.2 bits (58), Expect = 5.4
 Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 4/90 (4%)

Query: 33  DEPYGSFYYKNLTVLPTMAQFVITKVQEYTTKTNKAEHNKEDKSNNETSTVSGIL----N 88
              Y +    +  +L T ++         T K  K + N E K  +E             
Sbjct: 25  SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84

Query: 89  NKNQTENDTKNELSVHDKTTEKTYEDENEK 118
           ++ +T+   K          +      NE 
Sbjct: 85  SEGETKLGFKTPKKSKKTKKKPPKPKPNED 114


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.302    0.123    0.337 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,712,730
Number of extensions: 451324
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 39
Length of query: 124
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 39
Effective length of database: 7,167,512
Effective search space: 279532968
Effective search space used: 279532968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 53 (24.4 bits)