RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15312
         (124 letters)



>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response,
           polymorphism, secreted, immune system; 1.80A {Homo
           sapiens}
          Length = 223

 Score = 62.5 bits (151), Expect = 4e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%)

Query: 2   DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEY 61
           DAGTD GFTF+SP++A    + V  I  ++P  P  SFYY  L  LP +A+  + ++++ 
Sbjct: 162 DAGTDSGFTFSSPNFATIPQDTVTEITSSSPSHPANSFYYPRLKALPPIARVTLLRLRQS 221


>3q13_A Spondin-1; FS-domain, membrane targeting, AXON guidance, C2-
           derivative, glycosylated, extracellular matrix, cell
           adhesi; HET: NAG BMA; 1.95A {Homo sapiens}
          Length = 258

 Score = 61.4 bits (148), Expect = 1e-12
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 2   DAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQEY 61
           DAGTD G T+ SP+      E +  +  T+ D P   FY      +  +A+ VI ++   
Sbjct: 170 DAGTDSGVTYESPNKPTIPQEKIRPL--TSLDHPQSPFYDPEGGSITQVARVVIERIARK 227

Query: 62  TTKTNKAEHNKEDKSNNETSTVSGILNN 89
             +      +  D    + +      ++
Sbjct: 228 -GEQCNIVPDNVDDIVADLAPEEKTGHH 254


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.47
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 19/95 (20%)

Query: 31  TPDEPYGSFYYKNLTVLP-----TMAQFVI--TKVQEYTTKTNKAE-HNK---EDKSNNE 79
            P E      +  L+V P           +    V +        + H     E +    
Sbjct: 367 EPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 80  TSTVSGI-LNNKNQTENDTKNELSVHDKTTEKTYE 113
           T ++  I L  K + EN+     ++H    +  Y 
Sbjct: 425 TISIPSIYLELKVKLENEY----ALHRSIVDH-YN 454


>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
           inhibition, bromopyruvate, amino-acid biosynthesis; HET:
           FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
           3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
          Length = 644

 Score = 26.3 bits (58), Expect = 3.5
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 9   FTFTSPDYANEEPEPVFRIGLTTPDEP 35
           +T T  +YA +  + V  +   TP+ P
Sbjct: 220 YTGTELEYAKQVCDAVGEVIAPTPERP 246


>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
           genomics, PSI-2, protein structure initiative; HET: MSE;
           1.90A {Silicibacter pomeroyi dss-3}
          Length = 391

 Score = 24.8 bits (55), Expect = 8.9
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 26  RIGLTTPDEPYGSFY 40
           + G T    P G+FY
Sbjct: 301 KAGFTRIAPPDGAFY 315


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.302    0.123    0.337 

Gapped
Lambda     K      H
   0.267   0.0480    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,611,297
Number of extensions: 76163
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 8
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 51 (24.0 bits)