RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15312
         (124 letters)



>g1b35.1 b.121.4.1 (D:,C:) Insect picorna-like virus coat proteins
           {Cricket paralysis virus [TaxId: 12136]}
          Length = 339

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 8/69 (11%), Positives = 20/69 (28%)

Query: 1   MDAGTDQGFTFTSPDYANEEPEPVFRIGLTTPDEPYGSFYYKNLTVLPTMAQFVITKVQE 60
           +D  T    +FT P   +       R   +   +           V   +   V+ ++  
Sbjct: 222 VDLRTSTAVSFTVPYIGSRPWLYCIRPESSWLSKDNTDGALMYNCVSGIVRVEVLNQLVA 281

Query: 61  YTTKTNKAE 69
                ++ +
Sbjct: 282 AQNVFSEID 290


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.302    0.123    0.337 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,648
Number of extensions: 14455
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 10
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 47 (22.3 bits)