BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15313
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D34|A Chain A, Structure Of The F-Spondin Domain Of Mindin
 pdb|3D34|B Chain B, Structure Of The F-Spondin Domain Of Mindin
          Length = 223

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 19  PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
           P+   + CS  +   Y +T    WSQ AFPK +P  RP AQW+ L G +H+ + ++++  
Sbjct: 2   PLGGESICSARAPAKYSITFTGKWSQTAFPKQYPLFRPPAQWSSLLGAAHSSDYSMWRKN 61

Query: 79  RLADKSLQTFAELGKT----EDFESTLNHSQ-VLSTFYAPPIRKGVGLTSSSFFVNAEYS 133
           +     L+ FAE G+     ++ E+     Q V   F AP +  G G TS+   V   +S
Sbjct: 62  QYVSNGLRDFAERGEAWALMKEIEAAGEALQSVHEVFSAPAVPSGTGQTSAELEVQRRHS 121


>pdb|3Q13|A Chain A, The Structure Of The Ca2+-Binding, Glycosylated F-Spondin
           Domain Of F- Spondin, A C2-Domain Variant From
           Extracellular Matrix
          Length = 258

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 19  PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
           P+L    C       YRLT Y  WS++  PK +P  R    W+ + G SH++N  L++ G
Sbjct: 11  PILDCCACG---TAKYRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYG 65

Query: 79  RLADKSLQTFAELGKTEDFESTLNH--SQVLSTFYA 112
             A + ++  AELG     E  +     +VL+   A
Sbjct: 66  GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,309,387
Number of Sequences: 62578
Number of extensions: 113031
Number of successful extensions: 226
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)