BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15313
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BMS2|SPON2_MOUSE Spondin-2 OS=Mus musculus GN=Spon2 PE=1 SV=2
Length = 330
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 12 FILAAFG-----PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGI 66
F+LA G P+ + C+ L Y +T WSQ AFPK +P RP AQW+ L G
Sbjct: 15 FLLAMIGSTTSQPLGGESVCTARPLARYSITFIGKWSQTAFPKQYPLFRPPAQWSSLLGA 74
Query: 67 SHTENLTLFQVGRLADKSLQTFAELGKT----EDFESTLNHSQ-VLSTFYAPPIRKGVGL 121
+H+ + ++++ L+ FAE G+ ++ E+ Q V + F AP I G G
Sbjct: 75 AHSSDYSMWRKNEYVSNGLRDFAERGEAWALMKEIEAAGEKLQSVHAVFSAPAIPSGTGQ 134
Query: 122 TSSSFFVNAEYS 133
TS+ V+ +S
Sbjct: 135 TSTELEVHPRHS 146
>sp|Q9WV75|SPON2_RAT Spondin-2 OS=Rattus norvegicus GN=Spon2 PE=1 SV=1
Length = 330
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 12 FILAAFG-----PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGI 66
F+LA G P+ + C+ L Y +T WSQ AFPK +P RP AQW+ L G
Sbjct: 15 FLLAMLGSTAGQPLGGESVCTARPLARYSITFTGKWSQTAFPKQYPLFRPPAQWSSLLGA 74
Query: 67 SHTENLTLFQVGRLADKSLQTFAELGKT----EDFESTLNHSQ-VLSTFYAPPIRKGVGL 121
+H+ + ++++ L+ FAE G+ ++ E+ Q V + F AP + G G
Sbjct: 75 AHSSDYSMWRKNEYVSNGLRDFAERGEAWALMKEIEAAGEKLQSVHAVFSAPAVPSGTGQ 134
Query: 122 TSSSFFVNAEYS 133
TS+ V+ +S
Sbjct: 135 TSAELEVHPRHS 146
>sp|Q9BUD6|SPON2_HUMAN Spondin-2 OS=Homo sapiens GN=SPON2 PE=1 SV=3
Length = 331
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P+ + CS +L Y +T WSQ AFPK +P RP AQW+ L G +H+ + ++++
Sbjct: 28 PLGGESICSARALAKYSITFTGKWSQTAFPKQYPLFRPPAQWSSLLGAAHSSDYSMWRKN 87
Query: 79 RLADKSLQTFAELGKT----EDFESTLNHSQ-VLSTFYAPPIRKGVGLTSSSFFVNAEYS 133
+ L+ FAE G+ ++ E+ Q V F AP + G G TS+ V +S
Sbjct: 88 QYVSNGLRDFAERGEAWALMKEIEAAGEALQSVHEVFSAPAVPSGTGQTSAELEVQRRHS 147
>sp|Q9W770|SPON1_CHICK Spondin-1 OS=Gallus gallus GN=SPON1 PE=2 SV=1
Length = 802
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P L C YRLT Y WS++ PK FP R W+ + G SH++N L++ G
Sbjct: 190 PTLDCCACGTAK---YRLTFYGNWSEKTHPKDFP--RRTNHWSAIIGSSHSKNYILWEYG 244
Query: 79 RLADKSLQTFAELGKTEDFESTLNHS--QVLSTFYA 112
A + ++ AELG E + +VL+ A
Sbjct: 245 GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 280
>sp|P35446|SPON1_RAT Spondin-1 OS=Rattus norvegicus GN=Spon1 PE=1 SV=1
Length = 807
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P+L C YRLT Y WS++ PK +P R W+ + G SH++N L++ G
Sbjct: 195 PILDCCACGTAK---YRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYG 249
Query: 79 RLADKSLQTFAELGKTEDFESTLNHS--QVLSTFYA 112
A + ++ AELG E + +VL+ A
Sbjct: 250 GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 285
>sp|Q8VCC9|SPON1_MOUSE Spondin-1 OS=Mus musculus GN=Spon1 PE=2 SV=1
Length = 807
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P+L C YRLT Y WS++ PK +P R W+ + G SH++N L++ G
Sbjct: 195 PILDCCACGTAK---YRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYG 249
Query: 79 RLADKSLQTFAELGKTEDFESTLNHS--QVLSTFYA 112
A + ++ AELG E + +VL+ A
Sbjct: 250 GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 285
>sp|Q9HCB6|SPON1_HUMAN Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2
Length = 807
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P+L C YRLT Y WS++ PK +P R W+ + G SH++N L++ G
Sbjct: 195 PILDCCACGTAK---YRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYG 249
Query: 79 RLADKSLQTFAELGKTEDFESTLNHS--QVLSTFYA 112
A + ++ AELG E + +VL+ A
Sbjct: 250 GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 285
>sp|Q9GLX9|SPON1_BOVIN Spondin-1 OS=Bos taurus GN=SPON1 PE=1 SV=1
Length = 807
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 19 PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
P+L C YRLT Y WS++ PK +P R W+ + G SH++N L++ G
Sbjct: 195 PILDCCACGTAK---YRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYG 249
Query: 79 RLADKSLQTFAELGKTEDFESTLNHS--QVLSTFYA 112
A + ++ AELG E + +VL+ A
Sbjct: 250 GYASEGVKQVAELGSPVKMEEEIRQQSDEVLTVIKA 285
>sp|P35447|SPON1_XENLA Spondin-1 OS=Xenopus laevis GN=spon1 PE=2 SV=1
Length = 803
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 34 YRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGK 93
YRLT Y WS++A PK +P R W+ + G SH+ L++ G+ +D ++ AELG
Sbjct: 203 YRLTFYGNWSEKAHPKDYP--RRANHWSAIIGGSHSGEYVLWEYGQASD-GVKQVAELGS 259
Query: 94 TEDFESTLNHS--QVLSTFYA 112
E + +VL+ A
Sbjct: 260 PVKMEEEIRQKGDEVLTVIKA 280
>sp|A2AJA7|AEGP_MOUSE Apical endosomal glycoprotein OS=Mus musculus GN=Mamdc4 PE=2 SV=1
Length = 1228
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 12 FILAAFGPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTEN 71
F + GP +A E L ++ FW FP+HF + L + +
Sbjct: 1031 FETSVLGPGGQAAWLRSEPLPATTVSCLRFWYYMGFPEHFYK----GELRVLLSSARGQL 1086
Query: 72 LTLFQVGRLADKSLQTFAELGKTEDFE 98
+Q G L D+ LQ EL +E+F+
Sbjct: 1087 AVWYQGGHLRDQWLQVQIELSNSEEFQ 1113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,192,298
Number of Sequences: 539616
Number of extensions: 1529242
Number of successful extensions: 3354
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3338
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)