Query psy15313
Match_columns 134
No_of_seqs 110 out of 143
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06468 Spond_N: Spondin_N; 100.0 1.8E-37 3.8E-42 244.9 6.1 104 31-134 1-109 (196)
2 KOG3539|consensus 100.0 8.3E-38 1.8E-42 271.1 4.3 127 8-134 106-237 (508)
3 PRK11372 lysozyme inhibitor; P 84.4 1.6 3.5E-05 31.6 3.8 14 69-82 77-90 (109)
4 PF11153 DUF2931: Protein of u 68.7 6 0.00013 31.1 3.3 44 1-55 1-44 (216)
5 COG4314 NosL Predicted lipopro 67.6 5.5 0.00012 31.4 2.8 31 1-31 1-43 (176)
6 PRK10449 heat-inducible protei 65.9 6.2 0.00013 29.4 2.7 21 1-21 1-21 (140)
7 PRK13792 lysozyme inhibitor; P 60.2 6.5 0.00014 29.5 1.9 23 1-23 1-25 (127)
8 TIGR02747 TraV type IV conjuga 59.7 7.4 0.00016 29.9 2.1 31 1-31 1-33 (144)
9 TIGR00752 slp outer membrane l 59.7 4.8 0.0001 31.9 1.1 22 1-22 2-23 (182)
10 PRK10002 outer membrane protei 56.9 7.8 0.00017 32.7 2.1 17 1-17 2-18 (362)
11 TIGR03511 GldH_lipo gliding mo 54.7 13 0.00029 28.5 2.9 42 33-74 29-71 (156)
12 COG5510 Predicted small secret 52.8 13 0.00029 23.2 2.1 19 1-19 2-24 (44)
13 COG4851 CamS Protein involved 51.2 13 0.00028 32.3 2.5 24 1-24 1-26 (382)
14 PRK09810 entericidin A; Provis 50.3 15 0.00032 22.6 2.0 17 1-17 2-19 (41)
15 PF06788 UPF0257: Uncharacteri 49.7 8.8 0.00019 31.7 1.2 18 1-18 1-18 (236)
16 PF14466 DUF4425: Domain of un 49.1 11 0.00023 28.3 1.5 34 5-40 2-35 (121)
17 PF08139 LPAM_1: Prokaryotic m 47.0 16 0.00034 20.2 1.6 16 3-18 8-23 (25)
18 PLN02727 NAD kinase 47.0 23 0.00049 34.8 3.6 44 50-93 232-282 (986)
19 PF06291 Lambda_Bor: Bor prote 46.0 15 0.00032 26.4 1.7 21 71-91 40-60 (97)
20 PRK13791 lysozyme inhibitor; P 43.7 32 0.00069 25.2 3.3 19 65-83 80-98 (113)
21 PRK13733 conjugal transfer pro 43.5 27 0.00058 27.6 3.0 27 1-27 1-29 (171)
22 PRK10386 curli assembly protei 43.1 23 0.00051 26.7 2.5 41 55-95 65-105 (130)
23 PF12276 DUF3617: Protein of u 42.0 60 0.0013 23.8 4.6 38 1-40 1-38 (162)
24 PRK11443 lipoprotein; Provisio 40.0 30 0.00065 25.7 2.7 18 1-19 1-18 (124)
25 PRK10957 iron-enterobactin tra 38.6 32 0.0007 27.9 2.9 43 3-53 3-45 (317)
26 PF02402 Lysis_col: Lysis prot 38.1 21 0.00045 22.5 1.3 21 1-21 1-23 (46)
27 PRK10053 hypothetical protein; 37.7 27 0.00058 26.3 2.1 15 1-15 1-15 (130)
28 PRK13859 type IV secretion sys 35.6 38 0.00083 22.0 2.3 36 1-42 1-36 (55)
29 PRK10564 maltose regulon perip 34.9 30 0.00065 29.6 2.2 22 1-22 2-23 (303)
30 PRK15209 long polar fimbrial p 34.8 57 0.0012 24.5 3.6 11 1-11 1-11 (174)
31 PF13926 DUF4211: Domain of un 34.6 27 0.00059 26.0 1.7 19 23-41 116-138 (153)
32 COG3065 Slp Starvation-inducib 32.9 35 0.00076 27.4 2.2 22 1-22 7-28 (191)
33 PRK10081 entericidin B membran 32.5 37 0.0008 21.6 1.8 12 1-12 2-13 (48)
34 TIGR02122 TRAP_TAXI TRAP trans 32.1 44 0.00096 26.5 2.7 14 1-14 1-14 (320)
35 PRK15194 type-1 fimbrial prote 31.4 63 0.0014 24.6 3.3 13 1-13 1-13 (185)
36 PF10627 CsgE: Curli assembly 30.2 49 0.0011 23.9 2.4 39 55-93 42-80 (107)
37 PRK15262 putative fimbrial pro 29.3 55 0.0012 25.6 2.7 17 1-19 6-22 (197)
38 KOG0426|consensus 28.8 32 0.00069 26.6 1.3 17 46-62 59-75 (165)
39 PRK12696 flgH flagellar basal 28.0 43 0.00092 27.5 1.9 18 1-18 1-18 (236)
40 PRK15175 Vi polysaccharide exp 27.5 49 0.0011 28.6 2.4 74 1-79 1-87 (355)
41 KOG4088|consensus 26.9 34 0.00073 26.7 1.1 13 5-17 3-15 (167)
42 TIGR01165 cbiN cobalt transpor 26.8 53 0.0012 23.4 2.0 16 1-16 3-18 (91)
43 TIGR03656 IsdC heme uptake pro 26.6 1.1E+02 0.0023 25.1 4.0 39 1-40 1-40 (217)
44 PF12262 Lipase_bact_N: Bacter 26.3 41 0.00088 28.1 1.6 19 1-19 1-20 (268)
45 PRK15240 resistance to complem 26.0 50 0.0011 25.8 1.9 17 1-17 1-17 (185)
46 PRK15346 outer membrane secret 25.2 62 0.0013 28.9 2.6 13 1-13 1-13 (499)
47 PRK07718 fliL flagellar basal 24.7 58 0.0013 24.2 2.0 10 1-10 1-10 (142)
48 PRK15187 fimbrial protein BcfA 24.7 58 0.0013 24.9 2.1 12 1-12 1-12 (180)
49 PF03823 Neurokinin_B: Neuroki 24.5 72 0.0016 21.1 2.1 33 1-40 1-34 (59)
50 PF15240 Pro-rich: Proline-ric 24.3 48 0.001 26.4 1.6 14 6-19 2-15 (179)
51 PF10614 CsgF: Type VIII secre 23.7 61 0.0013 24.8 2.0 17 1-17 1-17 (142)
52 PF11839 DUF3359: Protein of u 23.5 79 0.0017 22.7 2.4 22 1-22 1-23 (96)
53 PRK02939 lipoprotein; Reviewed 22.9 47 0.001 27.5 1.3 17 1-17 1-17 (236)
54 cd00195 UBCc Ubiquitin-conjuga 22.9 83 0.0018 22.7 2.5 24 32-62 46-69 (141)
55 COG3689 Predicted membrane pro 22.9 71 0.0015 27.0 2.4 39 25-72 203-241 (271)
56 PRK12407 flgH flagellar basal 22.7 67 0.0014 26.1 2.1 18 1-18 1-18 (221)
57 PF13617 Lipoprotein_19: YnbE- 21.3 76 0.0016 20.8 1.8 16 4-19 3-18 (59)
58 PRK09934 fimbrial-like adhesin 21.0 1.5E+02 0.0032 22.4 3.6 15 33-48 48-62 (171)
59 KOG2492|consensus 20.9 53 0.0012 29.9 1.3 47 33-100 325-371 (552)
60 PF02315 MDH: Methanol dehydro 20.9 34 0.00074 24.5 0.1 32 1-32 1-34 (93)
No 1
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=100.00 E-value=1.8e-37 Score=244.90 Aligned_cols=104 Identities=31% Similarity=0.481 Sum_probs=78.9
Q ss_pred ceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCCchhhhc-cc-CCcceee
Q psy15313 31 LVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGKTEDFES-TL-NHSQVLS 108 (134)
Q Consensus 31 ~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~~~~Le~-~~-~~~~v~~ 108 (134)
+|+|+|||+|+||+++||||||.++|++|||+|||++|+++|+||++|+.||+|||+|||+|++..|++ ++ +.+.+++
T Consensus 1 ~A~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpligasH~~~~~lf~~G~~AS~gle~lAE~G~~~~L~~e~~~~~~~~~~ 80 (196)
T PF06468_consen 1 TATYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLIGASHNSDYTLFEYGEPASEGLERLAEDGDPSGLEAEIGSAGGNVRT 80 (196)
T ss_dssp EEEEEEEEEEE-STTTS-TT--CTSSCSEEEEEEEEEE-TT--S--TTS---HHHHHHHHH---HHHHHHHHHHHHHCCE
T ss_pred CceEEEEEEEEECCccCcccccccccccccchhhhhhccCcccccccCCcccHHHHHHHhcCCHHHHHHHHhhcccccce
Confidence 699999999999999999999999999999999999999999999999999999999999999999999 77 4455677
Q ss_pred EEEcC---CccCCCCcceEEEEEcCCCCC
Q psy15313 109 TFYAP---PIRKGVGLTSSSFFVNAEYSK 134 (134)
Q Consensus 109 ~~~a~---~i~~g~G~t~a~f~Vd~~H~l 134 (134)
+|++. +++.+.|.++++|+||++||+
T Consensus 81 v~~~~~~~~~~~~~~~t~~~f~vd~~~~~ 109 (196)
T PF06468_consen 81 VIKAFGAPGPPPGTGSTSATFTVDRNHHL 109 (196)
T ss_dssp EEEEEEC--BTTTCEEEEEEEEEETTC-E
T ss_pred eEeccCcccCCCCCCceeEEEEEcCCCCE
Confidence 77654 466788999999999999985
No 2
>KOG3539|consensus
Probab=100.00 E-value=8.3e-38 Score=271.14 Aligned_cols=127 Identities=29% Similarity=0.441 Sum_probs=113.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCccCHHHHH
Q psy15313 8 LTISFILAAFGPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQT 87 (134)
Q Consensus 8 ~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~ 87 (134)
.++--+.++..|......||||++|+|+++|+|+||+++||||||.+||.+|||++||++|++||.||++|++||+|+|+
T Consensus 106 ~l~~~~~~a~~p~~~~~~C~a~~~AkY~~~f~g~WS~~t~PK~yP~~r~~t~~s~~lGasH~snys~w~~g~~at~G~rd 185 (508)
T KOG3539|consen 106 DLCETKVAAIAPQEKPQTCCACDPAKYSLVFTGKWSRETHPKDYPGKRPRTRFSDALGASHSSNYSLWDIGQIATAGLRD 185 (508)
T ss_pred hhhhhhhhccCCCCCCCccccCChhheEEEEeeeecccCCccccCccchHHHHHHHhhhhcCCCcchhhcCcccchhhhh
Confidence 44456777777877766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchhhhc-cc-CCcceeeEEEc---CCccCCCCcceEEEEEcCCCCC
Q psy15313 88 FAELGKTEDFES-TL-NHSQVLSTFYA---PPIRKGVGLTSSSFFVNAEYSK 134 (134)
Q Consensus 88 ~AE~G~~~~Le~-~~-~~~~v~~~~~a---~~i~~g~G~t~a~f~Vd~~H~l 134 (134)
|||+|++..||. ++ ....++++|++ +.|++++|.|++.|+||++||+
T Consensus 186 ~AE~G~t~~le~e~~a~~s~~rsv~~~~~~~yvP~~~g~tsa~~~Vd~~H~l 237 (508)
T KOG3539|consen 186 FAESGSTMALESELKAPGSALRSVIKVFGLPYVPNVTGDTSAKFRVDSNHSL 237 (508)
T ss_pred hhhcCcHHHHHHHHhCcchhhhHHHHhhcCccccCCCCCcceEEEecCCcce
Confidence 999999999999 87 45555666554 5556899999999999999996
No 3
>PRK11372 lysozyme inhibitor; Provisional
Probab=84.38 E-value=1.6 Score=31.64 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=11.0
Q ss_pred CCcceeeecCCccC
Q psy15313 69 TENLTLFQVGRLAD 82 (134)
Q Consensus 69 ~~~y~lw~~G~~AS 82 (134)
+..|.+|..|+-|+
T Consensus 77 ~g~~~fWtKG~eA~ 90 (109)
T PRK11372 77 DGIYVFWSKGDEAT 90 (109)
T ss_pred CCcEEEEEeCCeEE
Confidence 35799999997764
No 4
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=68.66 E-value=6 Score=31.13 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEeeecCCCCCCCCCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTR 55 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~ 55 (134)
||. |++|++++++++|........= ..|+-.|.- ..|+.||.+.
T Consensus 1 mk~-i~~l~l~lll~~C~~~~~~~~~-----~~~~W~~~~-----~~P~~ypv~V 44 (216)
T PF11153_consen 1 MKK-ILLLLLLLLLTGCSTNPNEPLQ-----PYFEWRFGV-----AAPKHYPVWV 44 (216)
T ss_pred ChH-HHHHHHHHHHHhhcCCCccCCC-----CCCccEEEE-----ecCCCCEEEE
Confidence 664 4455588888888776652100 223222222 4588888643
No 5
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=67.57 E-value=5.5 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.042 Sum_probs=20.9
Q ss_pred CchhhHHHHHHHHHHhhC-CCCC-----------CCCCCCCcc
Q psy15313 1 MKSTLLLLTISFILAAFG-PVLS-----------SAQCSPESL 31 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-p~~~-----------d~~C~a~~~ 31 (134)
||.+||++++..++.++| +..+ +..|..|+-
T Consensus 1 mkr~Lla~la~~~llAgC~~~ed~~~p~P~~i~~~s~g~ycgM 43 (176)
T COG4314 1 MKRTLLAILAVTALLAGCRQAEDGAPPLPRQITDRSMGHYCGM 43 (176)
T ss_pred CchhHHHHHHHHHHHHhcchhhcCCCCCCccccccccccccce
Confidence 899998888777776644 3222 246888875
No 6
>PRK10449 heat-inducible protein; Provisional
Probab=65.90 E-value=6.2 Score=29.38 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=17.2
Q ss_pred CchhhHHHHHHHHHHhhCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVL 21 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~ 21 (134)
||+.++++++++++++|.+..
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~ 21 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSG 21 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCC
Confidence 998888888998888887643
No 7
>PRK13792 lysozyme inhibitor; Provisional
Probab=60.18 E-value=6.5 Score=29.52 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=16.2
Q ss_pred CchhhHHHHHHHH--HHhhCCCCCC
Q psy15313 1 MKSTLLLLTISFI--LAAFGPVLSS 23 (134)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~p~~~d 23 (134)
||..|++|++++. +++|.-...+
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~~~~ 25 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGSDDD 25 (127)
T ss_pred ChhHHHHHHHHHHhheecccCCCCC
Confidence 9988887777766 6666655443
No 8
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=59.72 E-value=7.4 Score=29.91 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=20.2
Q ss_pred CchhhHHHHHHHHHHhhC--CCCCCCCCCCCcc
Q psy15313 1 MKSTLLLLTISFILAAFG--PVLSSAQCSPESL 31 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~--p~~~d~~C~a~~~ 31 (134)
||-++|+++++.+++.+| +..+|-.|.+-+.
T Consensus 1 m~~~~l~~~~~~alLtGCsag~~~~f~C~~~~~ 33 (144)
T TIGR02747 1 MRIRFLLLIACVAFLTGCSAGCNSNFSCEGTGG 33 (144)
T ss_pred CceeehhHHHHHHHhhcccCCCCCCccccCCCC
Confidence 787877766555547777 6666666765443
No 9
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=59.68 E-value=4.8 Score=31.88 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=18.4
Q ss_pred CchhhHHHHHHHHHHhhCCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVLS 22 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~ 22 (134)
||.++++++++++++.|..++.
T Consensus 2 ~~~~lll~~~~l~LsgCasvP~ 23 (182)
T TIGR00752 2 GKKGLLFTALCFGLTGCIAPPK 23 (182)
T ss_pred ceEEehHHHHHHHHhcccCCCh
Confidence 7888998888888888877775
No 10
>PRK10002 outer membrane protein F; Provisional
Probab=56.95 E-value=7.8 Score=32.75 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=12.7
Q ss_pred CchhhHHHHHHHHHHhh
Q psy15313 1 MKSTLLLLTISFILAAF 17 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (134)
||++||.|++..++++.
T Consensus 2 mkktl~a~a~~a~~~a~ 18 (362)
T PRK10002 2 MKRNILAVIVPALLVAG 18 (362)
T ss_pred ccHhHHHHHHHHHHHhc
Confidence 99999988877654443
No 11
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=54.73 E-value=13 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=28.7
Q ss_pred EEEEEEEeeecCCCCCC-CCCCCCCCCcceeeeecccCCccee
Q psy15313 33 FYRLTVYTFWSQQAFPK-HFPDTRPVAQWTKLYGISHTENLTL 74 (134)
Q Consensus 33 ~Y~vtf~g~Ws~~thPk-~yP~~~~~~~~S~liGaSH~~~y~l 74 (134)
.|+=+=...|.++.-++ ++|.-.......-.|+.=|+.+|-+
T Consensus 29 ~y~~~p~~~W~k~d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy 71 (156)
T TIGR03511 29 SYQSTPHGGWQKSDTLDFEIPITDYTASYRLFLLIRNDNRYPY 71 (156)
T ss_pred EeeECCccCcCCCCcEEEEEeecCCCCcEEEEEEEEcCCCCcc
Confidence 45555566788888766 4554444556777788899988865
No 12
>COG5510 Predicted small secreted protein [Function unknown]
Probab=52.85 E-value=13 Score=23.22 Aligned_cols=19 Identities=47% Similarity=0.560 Sum_probs=11.4
Q ss_pred Cchhh----HHHHHHHHHHhhCC
Q psy15313 1 MKSTL----LLLTISFILAAFGP 19 (134)
Q Consensus 1 ~~~~~----~~~~~~~~~~~~~p 19 (134)
||.++ +++++|+++++|-.
T Consensus 2 mk~t~l~i~~vll~s~llaaCNT 24 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACNT 24 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh
Confidence 56643 45566677777633
No 13
>COG4851 CamS Protein involved in sex pheromone biosynthesis [General function prediction only]
Probab=51.25 E-value=13 Score=32.32 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.9
Q ss_pred CchhhHHHHHH--HHHHhhCCCCCCC
Q psy15313 1 MKSTLLLLTIS--FILAAFGPVLSSA 24 (134)
Q Consensus 1 ~~~~~~~~~~~--~~~~~~~p~~~d~ 24 (134)
||.||.+++++ +++++|.|.-+|.
T Consensus 1 Mkktl~i~~ta~vliLs~C~~~~dd~ 26 (382)
T COG4851 1 MKKTLGIAATASVLILSGCFPFVDDT 26 (382)
T ss_pred CchhhhHHHHHHHHHHhhccCccCCc
Confidence 99998554444 7888898988763
No 14
>PRK09810 entericidin A; Provisional
Probab=50.30 E-value=15 Score=22.61 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=8.7
Q ss_pred CchhhHHHHHH-HHHHhh
Q psy15313 1 MKSTLLLLTIS-FILAAF 17 (134)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~ 17 (134)
||..+++++++ +++++|
T Consensus 2 Mkk~~~l~~~~~~~L~aC 19 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGC 19 (41)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 66666555443 334444
No 15
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=49.75 E-value=8.8 Score=31.67 Aligned_cols=18 Identities=50% Similarity=0.752 Sum_probs=16.3
Q ss_pred CchhhHHHHHHHHHHhhC
Q psy15313 1 MKSTLLLLTISFILAAFG 18 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (134)
||.+++++++++++++|-
T Consensus 1 ~k~~~~~~~la~~L~~cd 18 (236)
T PF06788_consen 1 MKKTLLLLALAILLAGCD 18 (236)
T ss_pred CceeeHHHHHHHHhhhcc
Confidence 999999999999998884
No 16
>PF14466 DUF4425: Domain of unknown function (DUF4425) ; PDB: 2LGE_A 2LG7_A 3U6G_B 2LRG_A.
Probab=49.15 E-value=11 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEe
Q psy15313 5 LLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYT 40 (134)
Q Consensus 5 ~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g 40 (134)
+++++++++++.|.--+++ .- .-+.+.|+|+++=
T Consensus 2 ~~~l~~~l~~vsC~~dd~~-~~-~~~tg~ykIvveq 35 (121)
T PF14466_consen 2 IVALCAGLILVSCSKDDDQ-PG-TDKTGMYKIVVEQ 35 (121)
T ss_dssp ---------------------S-T---BSEEEEEEE
T ss_pred HHHHHhHhhEEeeccccCC-CC-cccceeEEEEEEe
Confidence 4667778888777543332 12 2568999999984
No 17
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=46.97 E-value=16 Score=20.23 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHhhC
Q psy15313 3 STLLLLTISFILAAFG 18 (134)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (134)
++++++++.+.+.++|
T Consensus 8 Kkil~~l~a~~~LagC 23 (25)
T PF08139_consen 8 KKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3455555555444443
No 18
>PLN02727 NAD kinase
Probab=46.97 E-value=23 Score=34.83 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCCCCCCCCcceee----e---ecccCCcceeeecCCccCHHHHHHHhcCC
Q psy15313 50 HFPDTRPVAQWTKL----Y---GISHTENLTLFQVGRLADKSLQTFAELGK 93 (134)
Q Consensus 50 ~yP~~~~~~~~S~l----i---GaSH~~~y~lw~~G~~AS~Gvr~~AE~G~ 93 (134)
+||..--.+.|.++ + -.+-++...+|+-||+.-+.++++|+.|=
T Consensus 232 ~~p~~~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~Gf 282 (986)
T PLN02727 232 DYPCHTLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGF 282 (986)
T ss_pred CCCCcccccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCC
Confidence 67765556667766 2 46678899999999999999999999884
No 19
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=46.02 E-value=15 Score=26.39 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=16.2
Q ss_pred cceeeecCCccCHHHHHHHhc
Q psy15313 71 NLTLFQVGRLADKSLQTFAEL 91 (134)
Q Consensus 71 ~y~lw~~G~~AS~Gvr~~AE~ 91 (134)
.|-+|..|+...--.++++-.
T Consensus 40 ~ffi~Gl~q~~~vdaa~vCgg 60 (97)
T PF06291_consen 40 HFFISGLGQSKEVDAAQVCGG 60 (97)
T ss_pred ceEEEecCCcccccHHHhcCC
Confidence 677899999877777778743
No 20
>PRK13791 lysozyme inhibitor; Provisional
Probab=43.69 E-value=32 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=14.5
Q ss_pred ecccCCcceeeecCCccCH
Q psy15313 65 GISHTENLTLFQVGRLADK 83 (134)
Q Consensus 65 GaSH~~~y~lw~~G~~AS~ 83 (134)
+.+++..|.+|..|.-|+-
T Consensus 80 ~~~~~~~y~~WtKG~~A~L 98 (113)
T PRK13791 80 AINKNYTYKLYTKGKTAEL 98 (113)
T ss_pred ccCCCceEEEEEcCCeEEE
Confidence 3445677999999998864
No 21
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=43.49 E-value=27 Score=27.62 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=16.1
Q ss_pred CchhhH-HHHHHHHHHhhCCCCC-CCCCC
Q psy15313 1 MKSTLL-LLTISFILAAFGPVLS-SAQCS 27 (134)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~p~~~-d~~C~ 27 (134)
||...+ +++++++++.+|.... |-+|.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg~~s~f~C~ 29 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAGTNSEFECN 29 (171)
T ss_pred CchhhHHHHHHHHHHhccccCCCCCCCCC
Confidence 887554 4445556677777443 34676
No 22
>PRK10386 curli assembly protein CsgE; Provisional
Probab=43.05 E-value=23 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCCch
Q psy15313 55 RPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGKTE 95 (134)
Q Consensus 55 ~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~~~ 95 (134)
+|.++|+.+|..+|+..-..=..=++....+|+.||..=..
T Consensus 65 ~p~a~~GS~ItV~~n~~vIy~t~l~p~~~~lk~~A~~Ai~~ 105 (130)
T PRK10386 65 RPSARWGSWITITVNQDVIYQTFLFPNKRDFEKTVVFALDQ 105 (130)
T ss_pred EEcCCCCcEEEEEECCEEEEEEecCcchhHHHHHHHHHHHH
Confidence 47899999999999999877778899999999999876433
No 23
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=42.05 E-value=60 Score=23.83 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=20.6
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEe
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYT 40 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g 40 (134)
||++++++++.+++++..+...... .=..-.|+++.+.
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~a~~~--~~kpGlWe~t~~~ 38 (162)
T PF12276_consen 1 MKRRLLLALALALLALAAAAAAAAP--DIKPGLWEVTTTT 38 (162)
T ss_pred CchHHHHHHHHHHHHhhcccccccC--CCCCcccEEEEEe
Confidence 8999888877776643322222111 1123456666665
No 24
>PRK11443 lipoprotein; Provisional
Probab=40.02 E-value=30 Score=25.68 Aligned_cols=18 Identities=17% Similarity=0.325 Sum_probs=10.1
Q ss_pred CchhhHHHHHHHHHHhhCC
Q psy15313 1 MKSTLLLLTISFILAAFGP 19 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p 19 (134)
|| .++++++.++|+.|..
T Consensus 1 Mk-~~~~~~~~~lLsgCa~ 18 (124)
T PRK11443 1 MK-KFIAPLLALLLSGCQI 18 (124)
T ss_pred Ch-HHHHHHHHHHHHhccC
Confidence 87 4445555555665554
No 25
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=38.59 E-value=32 Score=27.88 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEeeecCCCCCCCCCC
Q psy15313 3 STLLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPD 53 (134)
Q Consensus 3 ~~~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~ 53 (134)
+||-+|++++++++|.+...+ ++.|.+|++-.=-+.+.|+. |.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ti~d~~G~~~l~~~-p~ 45 (317)
T PRK10957 3 YRLALLLLGLLLSGIAAAQAS-------AAGWPRTVTDSRGSVTLESK-PQ 45 (317)
T ss_pred hhHHHHHHHHHHhccCCCccc-------ccCCCEEEEcCCcCEeccCC-Cc
Confidence 567677777777777654321 33466666654445567775 53
No 26
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=38.09 E-value=21 Score=22.49 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=12.5
Q ss_pred Cchhh--HHHHHHHHHHhhCCCC
Q psy15313 1 MKSTL--LLLTISFILAAFGPVL 21 (134)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~p~~ 21 (134)
||+.+ +.+++.+++++|+...
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~ 23 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANY 23 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcc
Confidence 78665 3344446677776543
No 27
>PRK10053 hypothetical protein; Provisional
Probab=37.72 E-value=27 Score=26.27 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=10.6
Q ss_pred CchhhHHHHHHHHHH
Q psy15313 1 MKSTLLLLTISFILA 15 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (134)
||+.+|+++++++.+
T Consensus 1 MKK~~~~~~~~~~s~ 15 (130)
T PRK10053 1 MKLQAIALASFLVMP 15 (130)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999887776665533
No 28
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.65 E-value=38 Score=21.98 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=20.9
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEeee
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYTFW 42 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g~W 42 (134)
||+-||++++ .+++|+..+.- -.|.-..|.+++ |.|
T Consensus 1 MKY~lL~l~l--~La~CqT~D~l---AtckGpiFpLNV-grW 36 (55)
T PRK13859 1 MKYCLLCLAL--ALAGCQTNDTL---ASCKGPIFPLNV-GRW 36 (55)
T ss_pred CchhHHHHHH--HHHhccccCcc---ccccCCcccccc-ccc
Confidence 8887766654 56677765552 234445555554 344
No 29
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.91 E-value=30 Score=29.63 Aligned_cols=22 Identities=45% Similarity=0.452 Sum_probs=19.4
Q ss_pred CchhhHHHHHHHHHHhhCCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVLS 22 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~ 22 (134)
||.+|+.+.|+.++.++.|...
T Consensus 2 mk~~~~~~~l~~~l~~~~~~~~ 23 (303)
T PRK10564 2 MKKSLLALCLSAGLLASAPGIS 23 (303)
T ss_pred chHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999888754
No 30
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=34.80 E-value=57 Score=24.48 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=7.5
Q ss_pred CchhhHHHHHH
Q psy15313 1 MKSTLLLLTIS 11 (134)
Q Consensus 1 ~~~~~~~~~~~ 11 (134)
||+.++.+++.
T Consensus 1 Mkk~~~~~~~~ 11 (174)
T PRK15209 1 MKKVVFALSAL 11 (174)
T ss_pred CchHHHHHHHH
Confidence 89887655543
No 31
>PF13926 DUF4211: Domain of unknown function (DUF4211)
Probab=34.64 E-value=27 Score=26.05 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=15.8
Q ss_pred CCCCCCCcc----eEEEEEEEee
Q psy15313 23 SAQCSPESL----VFYRLTVYTF 41 (134)
Q Consensus 23 d~~C~a~~~----A~Y~vtf~g~ 41 (134)
...|.||+. |+|.|.|.|.
T Consensus 116 ~~~C~AC~~~~~~a~~~i~l~G~ 138 (153)
T PF13926_consen 116 GPSCDACNRSGHPATFRIRLSGK 138 (153)
T ss_pred CCcCcccCCCCCCceEEEEeCCC
Confidence 357999997 5999999993
No 32
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=32.87 E-value=35 Score=27.41 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.0
Q ss_pred CchhhHHHHHHHHHHhhCCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVLS 22 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~ 22 (134)
||.++|+.++||.+++|..++.
T Consensus 7 ~~~~~l~~~laflLsgC~tiPk 28 (191)
T COG3065 7 MKKGALIGTLAFLLSGCVTIPK 28 (191)
T ss_pred hHHHHHHHHHHHHHhhcccCCh
Confidence 5677899999999999977665
No 33
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=32.48 E-value=37 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.9
Q ss_pred CchhhHHHHHHH
Q psy15313 1 MKSTLLLLTISF 12 (134)
Q Consensus 1 ~~~~~~~~~~~~ 12 (134)
||.++.++++++
T Consensus 2 mKk~i~~i~~~l 13 (48)
T PRK10081 2 VKKTIAAIFSVL 13 (48)
T ss_pred hHHHHHHHHHHH
Confidence 566554444433
No 34
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=32.06 E-value=44 Score=26.47 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=9.4
Q ss_pred CchhhHHHHHHHHH
Q psy15313 1 MKSTLLLLTISFIL 14 (134)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (134)
||+|++++.+++++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (320)
T TIGR02122 1 MKKRLFLLGAALAI 14 (320)
T ss_pred CchHHHHHHHHHHH
Confidence 89999666555433
No 35
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=31.42 E-value=63 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=8.5
Q ss_pred CchhhHHHHHHHH
Q psy15313 1 MKSTLLLLTISFI 13 (134)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (134)
||..++.++++++
T Consensus 1 mk~~~~~~~~~~~ 13 (185)
T PRK15194 1 MKLRFISSAIASL 13 (185)
T ss_pred CchHHHHHHHHHH
Confidence 8888876655533
No 36
>PF10627 CsgE: Curli assembly protein CsgE; InterPro: IPR018900 Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis []. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF [].
Probab=30.16 E-value=49 Score=23.91 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=33.5
Q ss_pred CCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCC
Q psy15313 55 RPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGK 93 (134)
Q Consensus 55 ~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~ 93 (134)
+|.++|+.+|-..|+..-.+=..=.+...-+++.||..=
T Consensus 42 ~ps~r~GS~I~V~~~~~~iy~t~l~P~~~~~~~~a~~Av 80 (107)
T PF10627_consen 42 RPSARWGSLITVEVNNKVIYQTFLSPRRRDLKEMAEQAV 80 (107)
T ss_pred EECCCCCCEEEEEECCEEEEEEeeCccHHHHHHHHHHHH
Confidence 467889999999999998877788889999999998654
No 37
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=29.28 E-value=55 Score=25.64 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=7.9
Q ss_pred CchhhHHHHHHHHHHhhCC
Q psy15313 1 MKSTLLLLTISFILAAFGP 19 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p 19 (134)
||+.+++ |.+.++.++|
T Consensus 6 ~~~~~~~--~~~~~~~~~~ 22 (197)
T PRK15262 6 MKKIILF--LGLLFALTSP 22 (197)
T ss_pred HHHHHHH--HHHHHHhccc
Confidence 5554433 3344444555
No 38
>KOG0426|consensus
Probab=28.83 E-value=32 Score=26.57 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCccee
Q psy15313 46 AFPKHFPDTRPVAQWTK 62 (134)
Q Consensus 46 thPk~yP~~~~~~~~S~ 62 (134)
.||+|||...|.-.|+.
T Consensus 59 ~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 59 SFPLDYPLSPPKMRFTC 75 (165)
T ss_pred ecCCCCCCCCCceeeec
Confidence 69999999766555553
No 39
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=27.96 E-value=43 Score=27.48 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=13.9
Q ss_pred CchhhHHHHHHHHHHhhC
Q psy15313 1 MKSTLLLLTISFILAAFG 18 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (134)
|++++++++++++++++|
T Consensus 1 ~~~~~~~~~~~~~~l~gC 18 (236)
T PRK12696 1 MRKRLLATSLAVLLLAGC 18 (236)
T ss_pred CcccHHHHHHHHHHHhcc
Confidence 888998888887766554
No 40
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=27.53 E-value=49 Score=28.60 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=42.1
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCC---CC---CCCcceEEEEEEEee------ecCCCCCCCCCCCCCCCcce-eeeecc
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSA---QC---SPESLVFYRLTVYTF------WSQQAFPKHFPDTRPVAQWT-KLYGIS 67 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~---~C---~a~~~A~Y~vtf~g~------Ws~~thPk~yP~~~~~~~~S-~liGaS 67 (134)
||+-++++++++++++|. ++.++ +- ..-+-..|.|+=... |=..-|...|+ . .++. ..||.=
T Consensus 1 ~~~~~~~~~~~~~~~~c~-~pr~~~~~ei~~~~~~~~~~~~v~~~~~~~~~~~~p~~g~~~~~~---~-~~~~~~~ig~G 75 (355)
T PRK15175 1 MKKIIILLTTFFLLSGCT-IPRAVFKSSLINQDDPRYNLVEVTPTLKLSAPDTVPKTIVDPVFA---A-NNWHWTSLAKG 75 (355)
T ss_pred ChhHHHHHHHHHHHhhcC-CCCCcchhhhccccCCCeEEEEeehhhhhhhhhcCCcccCCcccc---c-CCCCCceECCC
Confidence 898888888888888887 43321 00 111335666653332 33323322233 2 4455 577777
Q ss_pred cCCcceeeecCC
Q psy15313 68 HTENLTLFQVGR 79 (134)
Q Consensus 68 H~~~y~lw~~G~ 79 (134)
---+.++|+.++
T Consensus 76 DvL~ItVwe~~~ 87 (355)
T PRK15175 76 DVLHITILSSGG 87 (355)
T ss_pred CEEEEEEEecCC
Confidence 777788998753
No 41
>KOG4088|consensus
Probab=26.86 E-value=34 Score=26.72 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhh
Q psy15313 5 LLLLTISFILAAF 17 (134)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (134)
+++++||++.++|
T Consensus 3 ~~a~AlcLvas~C 15 (167)
T KOG4088|consen 3 KIAVALCLVASAC 15 (167)
T ss_pred hhHHHHHHHHHHH
Confidence 3577778777775
No 42
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.81 E-value=53 Score=23.45 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=10.1
Q ss_pred CchhhHHHHHHHHHHh
Q psy15313 1 MKSTLLLLTISFILAA 16 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (134)
||..++|+++.++++.
T Consensus 3 ~~~~~~ll~~v~~l~~ 18 (91)
T TIGR01165 3 MKKTIWLLAAVAALVV 18 (91)
T ss_pred cchhHHHHHHHHHHHH
Confidence 7777776666655443
No 43
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=26.58 E-value=1.1e+02 Score=25.09 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=21.2
Q ss_pred CchhhHH-HHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEe
Q psy15313 1 MKSTLLL-LTISFILAAFGPVLSSAQCSPESLVFYRLTVYT 40 (134)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g 40 (134)
||..|.+ +++|++....+|... ..-..=..-+|+|.|.=
T Consensus 1 mk~~~~~~~~~~~~~f~~~~~~~-~~~~~L~DGtYsV~fkV 40 (217)
T TIGR03656 1 MKKILVFAFFTTILAFIILSAGF-SNSANLADGTYTINYTV 40 (217)
T ss_pred CcchhhHHHHHHHHHHhcccccc-cccccccCceEEEEEEE
Confidence 8888855 335555555555443 11112222489999954
No 44
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=26.33 E-value=41 Score=28.09 Aligned_cols=19 Identities=26% Similarity=0.057 Sum_probs=12.3
Q ss_pred CchhhHHHHHH-HHHHhhCC
Q psy15313 1 MKSTLLLLTIS-FILAAFGP 19 (134)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~p 19 (134)
||+++|+++++ .+++++|-
T Consensus 1 Mkk~~l~~~l~sal~L~GCg 20 (268)
T PF12262_consen 1 MKKLLLSSALASALGLAGCG 20 (268)
T ss_pred CchHHHHHHHHHHHHeeecC
Confidence 99999866665 33355554
No 45
>PRK15240 resistance to complement killing; Provisional
Probab=26.02 E-value=50 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=10.8
Q ss_pred CchhhHHHHHHHHHHhh
Q psy15313 1 MKSTLLLLTISFILAAF 17 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (134)
||+.++++++.+.++.+
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 99999766554444333
No 46
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=25.19 E-value=62 Score=28.87 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=10.0
Q ss_pred CchhhHHHHHHHH
Q psy15313 1 MKSTLLLLTISFI 13 (134)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (134)
||++++|++||++
T Consensus 1 ~~~~~~~~~~~~~ 13 (499)
T PRK15346 1 MKKLLILIFLFLL 13 (499)
T ss_pred CchhHHHHHHHHH
Confidence 8888887777754
No 47
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.73 E-value=58 Score=24.21 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=7.1
Q ss_pred CchhhHHHHH
Q psy15313 1 MKSTLLLLTI 10 (134)
Q Consensus 1 ~~~~~~~~~~ 10 (134)
||++++++++
T Consensus 1 ~kkkl~~i~~ 10 (142)
T PRK07718 1 MKNKLIKIML 10 (142)
T ss_pred CcchHHHHHH
Confidence 8899866543
No 48
>PRK15187 fimbrial protein BcfA; Provisional
Probab=24.69 E-value=58 Score=24.92 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=9.0
Q ss_pred CchhhHHHHHHH
Q psy15313 1 MKSTLLLLTISF 12 (134)
Q Consensus 1 ~~~~~~~~~~~~ 12 (134)
||..+|+++++.
T Consensus 1 mk~~~~~~~~~~ 12 (180)
T PRK15187 1 MKKPVLALMVSA 12 (180)
T ss_pred CchhhHHHHHHH
Confidence 999987766663
No 49
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=24.53 E-value=72 Score=21.05 Aligned_cols=33 Identities=21% Similarity=0.022 Sum_probs=19.1
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCCCCC-CCcceEEEEEEEe
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSAQCS-PESLVFYRLTVYT 40 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~~C~-a~~~A~Y~vtf~g 40 (134)
|+++||+.++-++..+- .|- .|++-.=++..-|
T Consensus 1 MR~~lLf~aiLalsla~-------s~gavCeesQeQ~~p~g 34 (59)
T PF03823_consen 1 MRSTLLFAAILALSLAR-------SFGAVCEESQEQVVPGG 34 (59)
T ss_pred ChhHHHHHHHHHHHHHH-------HhhhhhhhhhhccCCCC
Confidence 88888776654332221 132 5667666666666
No 50
>PF15240 Pro-rich: Proline-rich
Probab=24.30 E-value=48 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhCC
Q psy15313 6 LLLTISFILAAFGP 19 (134)
Q Consensus 6 ~~~~~~~~~~~~~p 19 (134)
|||||+++|+|...
T Consensus 2 LlVLLSvALLALSS 15 (179)
T PF15240_consen 2 LLVLLSVALLALSS 15 (179)
T ss_pred hhHHHHHHHHHhhh
Confidence 66777766665543
No 51
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=23.69 E-value=61 Score=24.81 Aligned_cols=17 Identities=41% Similarity=0.354 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHHhh
Q psy15313 1 MKSTLLLLTISFILAAF 17 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (134)
||+++|+.++.+++++.
T Consensus 1 mk~~~l~a~l~~~~~~~ 17 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAAS 17 (142)
T ss_pred CcEeHHHHHHHHHHccc
Confidence 99999866666655544
No 52
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=23.52 E-value=79 Score=22.73 Aligned_cols=22 Identities=36% Similarity=0.309 Sum_probs=14.8
Q ss_pred CchhhH-HHHHHHHHHhhCCCCC
Q psy15313 1 MKSTLL-LLTISFILAAFGPVLS 22 (134)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~p~~~ 22 (134)
||..|+ .|.++++++.||....
T Consensus 1 M~k~l~sal~~~~~L~~GCAsts 23 (96)
T PF11839_consen 1 MKKLLLSALALAALLLAGCASTS 23 (96)
T ss_pred CchHHHHHHHHHHHHHhHccCCc
Confidence 777774 4555677887877554
No 53
>PRK02939 lipoprotein; Reviewed
Probab=22.95 E-value=47 Score=27.53 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=15.1
Q ss_pred CchhhHHHHHHHHHHhh
Q psy15313 1 MKSTLLLLTISFILAAF 17 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (134)
||..+++.+++++++.|
T Consensus 1 ~k~~~~~~~~~~~l~gc 17 (236)
T PRK02939 1 MKKKLLLTLLAILLTGC 17 (236)
T ss_pred CceeehHHHHHHHHhcc
Confidence 89999999999988877
No 54
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=22.94 E-value=83 Score=22.73 Aligned_cols=24 Identities=21% Similarity=0.659 Sum_probs=17.1
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCCCCCccee
Q psy15313 32 VFYRLTVYTFWSQQAFPKHFPDTRPVAQWTK 62 (134)
Q Consensus 32 A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~ 62 (134)
..|++++ .+|++||...|.-.|..
T Consensus 46 ~~~~~~~-------~~p~~yP~~pP~v~f~~ 69 (141)
T cd00195 46 GIFKLDI-------EFPEDYPFKPPKVRFVT 69 (141)
T ss_pred CEEEEEE-------ECCCccCCCCCeEEEeC
Confidence 4566555 48999999877777753
No 55
>COG3689 Predicted membrane protein [Function unknown]
Probab=22.86 E-value=71 Score=27.02 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.2
Q ss_pred CCCCCcceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcc
Q psy15313 25 QCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENL 72 (134)
Q Consensus 25 ~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y 72 (134)
.||+.|.-.|-++.++. ++.. || +.-|=.+=|.-++.-|
T Consensus 203 icC~ADa~vygl~v~~~-~~~~----y~----ndtWltvkGtl~~e~~ 241 (271)
T COG3689 203 ICCAADAGVYGLLVELD-NQTD----YK----NDTWLTVKGTLSSEYL 241 (271)
T ss_pred eeeeccceeEEEEEEcc-cccc----CC----CCceEEEEeEEEeeec
Confidence 59999999999999996 5544 44 2347777776665444
No 56
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.67 E-value=67 Score=26.12 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=11.9
Q ss_pred CchhhHHHHHHHHHHhhC
Q psy15313 1 MKSTLLLLTISFILAAFG 18 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (134)
||..++++++.++++.|.
T Consensus 1 mk~~~~~~~~~l~l~gCa 18 (221)
T PRK12407 1 MKRFLILTALLLALCGCE 18 (221)
T ss_pred ChhHHHHHHHHHHHhhcc
Confidence 877776666666665554
No 57
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=21.33 E-value=76 Score=20.83 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHhhCC
Q psy15313 4 TLLLLTISFILAAFGP 19 (134)
Q Consensus 4 ~~~~~~~~~~~~~~~p 19 (134)
.++++++++++++|.|
T Consensus 3 l~~~~~~~~~l~gCtP 18 (59)
T PF13617_consen 3 LLLLLALALALTGCTP 18 (59)
T ss_pred hHHHHHHHHHHccCCC
Confidence 3455555566666654
No 58
>PRK09934 fimbrial-like adhesin protein SfmF; Provisional
Probab=20.97 E-value=1.5e+02 Score=22.39 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=7.5
Q ss_pred EEEEEEEeeecCCCCC
Q psy15313 33 FYRLTVYTFWSQQAFP 48 (134)
Q Consensus 33 ~Y~vtf~g~Ws~~thP 48 (134)
...|.+- .|+...+.
T Consensus 48 ~~~V~Lg-~v~~~~~~ 62 (171)
T PRK09934 48 DKTVDLG-TWPTKQLL 62 (171)
T ss_pred ceEEECC-cccHHHcc
Confidence 4455553 45555553
No 59
>KOG2492|consensus
Probab=20.93 E-value=53 Score=29.92 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=28.0
Q ss_pred EEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCCchhhhcc
Q psy15313 33 FYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGKTEDFEST 100 (134)
Q Consensus 33 ~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~~~~Le~~ 100 (134)
.-++-|+. -||||||+ .++-..|+.+-.==+ ++.=|..|++..||.+
T Consensus 325 emR~RFTS-----PHPKDfpd--------evl~li~~rdnickq--------ihlPAqSgds~vLE~m 371 (552)
T KOG2492|consen 325 EMRIRFTS-----PHPKDFPD--------EVLELIRDRDNICKQ--------IHLPAQSGDSRVLEIM 371 (552)
T ss_pred ceEEEecC-----CCCCCChH--------HHHHHHHhCcchhhe--------eeccccCCchHHHHHH
Confidence 35667776 89999995 444444443322211 1223567888888873
No 60
>PF02315 MDH: Methanol dehydrogenase beta subunit; InterPro: IPR003420 Methanol dehydrogenase (MDH) (1.1.99.8 from EC), found in Gram-negative bacteria, is a pyrroloquinoline quinone (PQQ)-containing enzyme which oxidises methanol to formaldehyde. It is located in the periplasmic space and passes electrons derived from the oxidation of methanol to the soluble cytochrome cL []. The enzyme is a tetramer composed of two large alpha subunits and two smaller beta subunits. The alpha subunit binds the PQQ cofactor and contains the active site, while the function of the beta subunit is currently unknown []. The alpha subunit forms an eight-bladed propeller structure, with several novel tryptophan-docking motifs linking the individual blades together. This entry represents the beta subunit of methanol dehydrogenase.; GO: 0004022 alcohol dehydrogenase (NAD) activity, 0015946 methanol oxidation, 0055114 oxidation-reduction process; PDB: 1LRW_B 2D0V_J 2AD6_B 1G72_B 4AAH_D 2AD8_D 2AD7_D 1H4J_D 1H4I_B 1W6S_B ....
Probab=20.91 E-value=34 Score=24.48 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=3.1
Q ss_pred CchhhHHHHHHHHHHhhCC-CCCC-CCCCCCcce
Q psy15313 1 MKSTLLLLTISFILAAFGP-VLSS-AQCSPESLV 32 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p-~~~d-~~C~a~~~A 32 (134)
||..+++.++.++++...+ +.-| ..|.+-+..
T Consensus 1 Mk~~~~~~~~~~~~~~a~~A~AYDGt~CkapG~C 34 (93)
T PF02315_consen 1 MKTVLLAAAAAAALATAGAALAYDGTNCKAPGNC 34 (93)
T ss_dssp ------------------------S---SBTTB-
T ss_pred ChhhHHHHHHHHHHhcchhhhhccCcccCCCccc
Confidence 8888876666655543332 2222 467765543
Done!