Query psy15313
Match_columns 134
No_of_seqs 110 out of 143
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:50:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d34_A Spondin-2; cell adhesio 100.0 8.2E-44 2.8E-48 284.9 10.0 117 18-134 1-122 (223)
2 3q13_A Spondin-1; FS-domain, m 100.0 2.1E-42 7.3E-47 281.6 11.0 109 24-134 13-129 (258)
3 1tzs_X 23-MER peptide from PEL 69.7 2.6 8.8E-05 22.7 1.7 21 1-21 1-21 (26)
4 2zzs_A Cytochrome C554; C-type 59.1 1.2 4E-05 29.0 -1.1 32 1-32 1-40 (103)
5 1c2n_A Cytochrome C2; electron 57.7 1.5 5.2E-05 30.7 -0.8 32 1-32 1-40 (137)
6 3kpa_A Probable ubiquitin fold 46.2 18 0.0006 27.4 3.4 40 32-80 83-122 (168)
7 4aui_A Porin (PORB); membrane 37.1 7.1 0.00024 30.6 0.0 12 1-12 1-12 (327)
8 2a3m_A COG3005: nitrate/TMAO r 32.1 9.6 0.00033 26.8 0.0 8 1-8 1-8 (130)
9 3tlk_A Ferrienterobactin-bindi 27.6 12 0.00042 29.0 -0.1 45 1-50 1-45 (326)
10 2a7l_A Hypothetical ubiquitin- 20.1 84 0.0029 22.1 3.1 23 47-69 79-101 (136)
No 1
>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response, polymorphism, secreted, immune system; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-44 Score=284.86 Aligned_cols=117 Identities=31% Similarity=0.525 Sum_probs=105.5
Q ss_pred CCCCCCCCCCCCcceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCCchhh
Q psy15313 18 GPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGKTEDF 97 (134)
Q Consensus 18 ~p~~~d~~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~~~~L 97 (134)
+|+..|.+||||++|+|+|||+|+||+++||||||.+||++|||++||++|+++|.||++|++||+|||+|||+|+++.|
T Consensus 1 ~~~~~~~~c~a~~~a~Y~vtf~~~ws~~~hpk~yP~~~~~~~~Spli~a~H~~~~~lf~~G~~AS~gLe~lAE~G~~~~L 80 (223)
T 3d34_A 1 QPLGGESICSARAPAKYSITFTGKWSQTAFPKQYPLFRPPAQWSSLLGAAHSSDYSMWRKNQYVSNGLRDFAERGEAWAL 80 (223)
T ss_dssp -------CCCCSSCEEEEEEEEECCCTTTCCTTCCCSSSCSEEEEEEEEEECTTCCSCCTTSCCCHHHHHHHHHCCCHHH
T ss_pred CCCCCCCCccCCCceEEEEEEEEeecCccCCccCccccCCCCccccEEEEecCCCcccccCCcccHHHHHHhccCCHHHH
Confidence 47778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-ccCC----cceeeEEEcCCccCCCCcceEEEEEcCCCCC
Q psy15313 98 ES-TLNH----SQVLSTFYAPPIRKGVGLTSSSFFVNAEYSK 134 (134)
Q Consensus 98 e~-~~~~----~~v~~~~~a~~i~~g~G~t~a~f~Vd~~H~l 134 (134)
++ ++.+ +.|+++|+++|++.+.|+++++|+||++||+
T Consensus 81 ~~e~~~~~~~~~~v~~~~~a~g~~~~pG~t~~~f~vd~~~~~ 122 (223)
T 3d34_A 81 MKEIEAAGEALQSVHEVFSAPAVPSGTGQTSAELEVQRRHSL 122 (223)
T ss_dssp HHHHHHHHHHHSCEEEEEEECCBSSTTCEEEEEEEEBTTBCE
T ss_pred HHHHHhhccccceeeeeeccCCccCCCCcceEEEEECCCCcE
Confidence 99 8743 6699999999999889999999999999874
No 2
>3q13_A Spondin-1; FS-domain, membrane targeting, AXON guidance, C2- derivative, glycosylated, extracellular matrix, cell adhesi; HET: NAG BMA; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-42 Score=281.57 Aligned_cols=109 Identities=28% Similarity=0.498 Sum_probs=100.4
Q ss_pred CCCCCCcceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCccCHHHHHHHhcCCchhhhc-cc-
Q psy15313 24 AQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGKTEDFES-TL- 101 (134)
Q Consensus 24 ~~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~Gvr~~AE~G~~~~Le~-~~- 101 (134)
.+||||++|+|+|+|+|+|||++|||||| ++++|||+|||++|+++|+||++|++||+|||+|||+|+++.|++ ++
T Consensus 13 ~~CcAc~~A~Y~vtF~g~Ws~~~hPk~yP--~~~~~fSpligasHs~~y~lw~~G~~AS~gl~~~AE~G~~~~L~~ei~~ 90 (258)
T 3q13_A 13 LDCCACGTAKYRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYGGYASEGVKQVAELGSPVKMEEEIRQ 90 (258)
T ss_dssp CSCCCCSEEEEEEEEEECCSTTTSCTTCC--TTTCEECCEEEEEECTTCCSCCTTSCCCHHHHHHHHHCCCHHHHHHHHT
T ss_pred ccccCCCcceEEEEEEEEECCccCcccCC--CCcccccchhhhhcCCCCcceeCCCcccHHHHHHhccCCHHHHHHHHHh
Confidence 46999999999999999999999999999 468999999999999999999999999999999999999999999 87
Q ss_pred CCcceeeEEEcCCcc------CCCCcceEEEEEcCCCCC
Q psy15313 102 NHSQVLSTFYAPPIR------KGVGLTSSSFFVNAEYSK 134 (134)
Q Consensus 102 ~~~~v~~~~~a~~i~------~g~G~t~a~f~Vd~~H~l 134 (134)
+++.|+++|+++|++ ++.|+++++|+||+.||+
T Consensus 91 ~g~~v~tvi~a~Gl~p~~~P~~~~~~~s~~f~vd~~h~l 129 (258)
T 3q13_A 91 QSDEVLTVIKAKAQWPAWQPLNVRAAPSAEFSVDRTRHL 129 (258)
T ss_dssp TGGGEEEEEEECCBSSSCCCTTTSCCCEEEEEEC-CCCE
T ss_pred cCccceeeeecccccccccCCCCCCcceEEEEEcCCCce
Confidence 556799999999975 456788999999999985
No 3
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=69.67 E-value=2.6 Score=22.73 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=18.7
Q ss_pred CchhhHHHHHHHHHHhhCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVL 21 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~ 21 (134)
||+-+--++.+++++..+|.-
T Consensus 1 MK~li~piAaGLLLa~sqp~l 21 (26)
T 1tzs_X 1 MKYLLPTAAAGLLLLAAQPAM 21 (26)
T ss_pred CcchhhhHHHHHHHHhcChHh
Confidence 899999999999999999864
No 4
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=59.11 E-value=1.2 Score=28.97 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=7.2
Q ss_pred CchhhHHHHHHHHHHhhCCCCCC--------CCCCCCcce
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSS--------AQCSPESLV 32 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d--------~~C~a~~~A 32 (134)
||+.++++++++++++......| ..|-+|+..
T Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~C~~CHg~ 40 (103)
T 2zzs_A 1 MKRVMIGAVAALTMLSGQALAGDAAAGQAKAAVCAACHGA 40 (103)
T ss_dssp ---------------------CCHHHHHHHTTTTHHHHCT
T ss_pred CchHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHhhcCC
Confidence 88877666555444333332222 169999965
No 5
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=57.67 E-value=1.5 Score=30.74 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=7.3
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCC--------CCCCCcce
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSA--------QCSPESLV 32 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~--------~C~a~~~A 32 (134)
||+.++++++++++++......|. .|-+|+..
T Consensus 1 Mk~~~~~~~~~~~~~~~~a~a~~~~~G~~lf~~C~~CH~~ 40 (137)
T 1c2n_A 1 MKISLTAATVAALVLAAPAFAGDAAKGEKEFNKCKTCHSI 40 (137)
T ss_dssp ---------------------CCHHHHHHHHHHHTTTCCB
T ss_pred CchHHHHHHHHHHHHhhhccccChHHHHHHHHhHHhhCCC
Confidence 888766553443322222222221 59999975
No 6
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=46.20 E-value=18 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.440 Sum_probs=28.4
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCcceeeecCCc
Q psy15313 32 VFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRL 80 (134)
Q Consensus 32 A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~ 80 (134)
.+|+..++= .+|.+||...|.-.|-.+.|- |.. ||+-|.+
T Consensus 83 ~kyeFkLef-----diP~tYP~tPPeI~Fp~ldgk-t~k---mYr~GkI 122 (168)
T 3kpa_A 83 EKYEFEMNF-----DIPVTYPQAPPEIALPELEGK-TVK---MYRGGKI 122 (168)
T ss_dssp EEEEEEEEE-----ECCTTTTTSCCCCBCGGGTTT-CSS---EETTTEE
T ss_pred ceeEEEEEE-----eCCccCCCCCCEeecccccCc-Ccc---ccCCCcE
Confidence 577777765 799999999998999887663 332 3555543
No 7
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=37.08 E-value=7.1 Score=30.63 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=0.0
Q ss_pred CchhhHHHHHHH
Q psy15313 1 MKSTLLLLTISF 12 (134)
Q Consensus 1 ~~~~~~~~~~~~ 12 (134)
||++||.|+++.
T Consensus 1 MKKtllAla~~a 12 (327)
T 4aui_A 1 MKKSLIALTLAA 12 (327)
T ss_dssp ------------
T ss_pred CcHHHHHHHHHH
Confidence 999988766543
No 8
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=32.13 E-value=9.6 Score=26.83 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=0.0
Q ss_pred CchhhHHH
Q psy15313 1 MKSTLLLL 8 (134)
Q Consensus 1 ~~~~~~~~ 8 (134)
||.||+++
T Consensus 1 Mkk~~~~~ 8 (130)
T 2a3m_A 1 MRKSLFAV 8 (130)
T ss_dssp --------
T ss_pred CchhHHHH
Confidence 89876544
No 9
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=27.64 E-value=12 Score=29.03 Aligned_cols=45 Identities=4% Similarity=-0.019 Sum_probs=12.8
Q ss_pred CchhhHHHHHHHHHHhhCCCCCCCCCCCCcceEEEEEEEeeecCCCCCCC
Q psy15313 1 MKSTLLLLTISFILAAFGPVLSSAQCSPESLVFYRLTVYTFWSQQAFPKH 50 (134)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~d~~C~a~~~A~Y~vtf~g~Ws~~thPk~ 50 (134)
||++.++++++++++.++ .+ |.+-..+.|.+|++..--..+.|+.
T Consensus 1 m~~~~~~~~~~l~~~~~l--~g---c~~~~~~~~~~tv~d~~G~vti~~~ 45 (326)
T 3tlk_A 1 MRLAPLYRNALLLTGLLL--SG---IAAVQAADWPRQITDSRGTHTLESQ 45 (326)
T ss_dssp -------------------------------CCCSEEEEETTEEEEECSC
T ss_pred CcchHHHHHHHHHHHHHH--hc---ccccccCCCCEEEEeCCccEEeCCC
Confidence 888887776554444332 22 6554556677888765555667774
No 10
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=20.06 E-value=84 Score=22.09 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCcceeeeecccC
Q psy15313 47 FPKHFPDTRPVAQWTKLYGISHT 69 (134)
Q Consensus 47 hPk~yP~~~~~~~~S~liGaSH~ 69 (134)
||.+||...|.-.|-.-|..-|-
T Consensus 79 fp~~YP~~PP~v~F~T~i~~~HP 101 (136)
T 2a7l_A 79 FSSRYPFDSPQVMFTGENIPVHP 101 (136)
T ss_dssp ECTTTTTSCCEEEEESSCCCCBT
T ss_pred CCCCCCCCCCEEEEeCCCcCCCc
Confidence 89999987766666554433353
Done!