Query psy15313
Match_columns 134
No_of_seqs 110 out of 143
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 17:51:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qqra1 b.34.9.1 (A:897-955) J 47.0 1.7 0.00012 26.3 -0.3 19 32-50 30-49 (59)
2 d3c0na2 f.8.1.1 (A:85-468) (Pr 27.0 18 0.0013 28.6 2.8 24 32-56 228-253 (384)
3 d2fo3a1 d.20.1.1 (A:9-117) Put 23.4 26 0.0019 22.1 2.6 23 31-60 44-66 (109)
4 d2a7la1 d.20.1.1 (A:1-117) Ubi 21.9 26 0.0019 22.1 2.4 34 47-83 60-93 (117)
5 d2awfa1 d.20.1.1 (A:7-131) Ubi 19.2 31 0.0023 22.0 2.4 24 32-62 47-70 (125)
6 d2gvia2 g.39.1.18 (A:169-201) 17.7 18 0.0013 18.7 0.7 12 25-36 5-16 (33)
7 d2a4da1 d.20.1.1 (A:82-220) Ub 16.4 50 0.0036 21.6 2.9 26 30-62 54-79 (139)
8 d1ayza_ d.20.1.1 (A:) Ubiquiti 16.4 50 0.0036 21.4 3.0 27 29-62 47-73 (153)
9 d2gtln1 b.61.7.1 (N:102-229) E 16.2 53 0.0038 22.0 3.0 50 25-74 18-67 (128)
10 d1jb0x_ f.23.20.1 (X:) Subunit 16.0 44 0.0032 16.7 1.9 13 5-17 11-23 (29)
No 1
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.00 E-value=1.7 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=16.4
Q ss_pred eEEEEEEE-eeecCCCCCCC
Q psy15313 32 VFYRLTVY-TFWSQQAFPKH 50 (134)
Q Consensus 32 A~Y~vtf~-g~Ws~~thPk~ 50 (134)
--|+|.|. |.||.+.||.|
T Consensus 30 tfyeV~FdDgS~sdnl~PEd 49 (59)
T d2qqra1 30 TFYEVNFDDGSFSDNLYPED 49 (59)
T ss_dssp EEEEEEETTSCEEEEECGGG
T ss_pred EEEEEEecCCCcccCcCchh
Confidence 46999995 88999999987
No 2
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe {Aeromonas hydrophila [TaxId: 644]}
Probab=27.00 E-value=18 Score=28.61 Aligned_cols=24 Identities=46% Similarity=0.814 Sum_probs=18.6
Q ss_pred eEEEEEEEe--eecCCCCCCCCCCCCC
Q psy15313 32 VFYRLTVYT--FWSQQAFPKHFPDTRP 56 (134)
Q Consensus 32 A~Y~vtf~g--~Ws~~thPk~yP~~~~ 56 (134)
-.|+|+|+| .|+-|.|-.| |.+||
T Consensus 228 I~Ydv~~~gFLRwgGNa~~~h-p~~Rp 253 (384)
T d3c0na2 228 VSYDLTLSGFLRWGGNAWYTH-PDNRP 253 (384)
T ss_dssp EEEEEEEEEEBCTTCCCBTTC-CSSCC
T ss_pred EEEEEEEeeeEeccccccccC-CCCCC
Confidence 469999999 8998876655 66664
No 3
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Probab=23.36 E-value=26 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=15.8
Q ss_pred ceEEEEEEEeeecCCCCCCCCCCCCCCCcc
Q psy15313 31 LVFYRLTVYTFWSQQAFPKHFPDTRPVAQW 60 (134)
Q Consensus 31 ~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~ 60 (134)
...|.+.+ .||.+||...|.-+|
T Consensus 44 gg~f~~~i-------~fp~~YP~~pP~v~F 66 (109)
T d2fo3a1 44 NEVYKLKI-------IFPDDYPLKPPIVYF 66 (109)
T ss_dssp TCEEEEEE-------ECCTTTTTSCCEEEE
T ss_pred CCCceEEE-------EeccccCCCCCeEEE
Confidence 34666666 489999987665555
No 4
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.90 E-value=26 Score=22.13 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCcceeeeecccCCcceeeecCCccCH
Q psy15313 47 FPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADK 83 (134)
Q Consensus 47 hPk~yP~~~~~~~~S~liGaSH~~~y~lw~~G~~AS~ 83 (134)
||.+||...|.-.|-.-++.-|- |. ...|.+--+
T Consensus 60 fp~~YP~~pP~v~F~t~~~~~Hp-nv--~~~G~iCl~ 93 (117)
T d2a7la1 60 FSSRYPFDSPQVMFTGENIPVHP-HV--YSNGHICLS 93 (117)
T ss_dssp ECTTTTTSCCEEEEESSCCCCBT-TB--CTTCBBCCG
T ss_pred cCcccccCCCEEEEeCCCccccc-cC--cCCCeEEee
Confidence 79999987776677544444453 32 346665433
No 5
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Probab=19.19 E-value=31 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=16.0
Q ss_pred eEEEEEEEeeecCCCCCCCCCCCCCCCccee
Q psy15313 32 VFYRLTVYTFWSQQAFPKHFPDTRPVAQWTK 62 (134)
Q Consensus 32 A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~ 62 (134)
..|.+.| .||.+||...|.-.|-.
T Consensus 47 g~f~~~i-------~fp~~YP~~pP~v~f~t 70 (125)
T d2awfa1 47 GVFKAHL-------TFPKDYPLRPPKMKFIT 70 (125)
T ss_dssp CEEEEEE-------ECCTTTTSSCCEEEECS
T ss_pred CeeEEEE-------ecCCCcCCCCCeEEecC
Confidence 4566655 48999998766555543
No 6
>d2gvia2 g.39.1.18 (A:169-201) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=17.74 E-value=18 Score=18.70 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=9.9
Q ss_pred CCCCCcceEEEE
Q psy15313 25 QCSPESLVFYRL 36 (134)
Q Consensus 25 ~C~a~~~A~Y~v 36 (134)
.|..|++.+|+.
T Consensus 5 rcdvcgeytyea 16 (33)
T d2gvia2 5 RCDVCGEYTYEA 16 (33)
T ss_dssp ECTTTCCEEEGG
T ss_pred EEeeccceeecc
Confidence 499999998863
No 7
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Probab=16.36 E-value=50 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.437 Sum_probs=17.9
Q ss_pred cceEEEEEEEeeecCCCCCCCCCCCCCCCccee
Q psy15313 30 SLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTK 62 (134)
Q Consensus 30 ~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~ 62 (134)
+...|.+.++ ||.+||...|.-+|-.
T Consensus 54 egg~f~~~i~-------fp~~YP~~pP~v~F~t 79 (139)
T d2a4da1 54 ENRIYSLKIE-------CGPKYPEAPPFVRFVT 79 (139)
T ss_dssp TTCEEEEEEE-------CCTTTTTSCCEEEESB
T ss_pred hcCEEEEEEE-------CCCCCCCCCCEEEEec
Confidence 3456666664 8999999777666643
No 8
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}
Probab=16.35 E-value=50 Score=21.40 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=18.4
Q ss_pred CcceEEEEEEEeeecCCCCCCCCCCCCCCCccee
Q psy15313 29 ESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTK 62 (134)
Q Consensus 29 ~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~ 62 (134)
.+...|.+.+ .+|.+||...|.-.|..
T Consensus 47 y~gg~f~~~i-------~~p~~YP~~pP~v~f~t 73 (153)
T d1ayza_ 47 YEDGTFRLLL-------EFDEEYPNKPPHVKFLS 73 (153)
T ss_dssp TTTCEEEEEE-------ECCTTTTTSCCEEEESS
T ss_pred cCCCEEEEEE-------ecCccccCCCCeeeecc
Confidence 3445677766 48999998776555544
No 9
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=16.20 E-value=53 Score=21.95 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=35.9
Q ss_pred CCCCCcceEEEEEEEeeecCCCCCCCCCCCCCCCcceeeeecccCCccee
Q psy15313 25 QCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTL 74 (134)
Q Consensus 25 ~C~a~~~A~Y~vtf~g~Ws~~thPk~yP~~~~~~~~S~liGaSH~~~y~l 74 (134)
.|.....-.+.|+++..|...-||..=+...-.--.++.-|.++..+..+
T Consensus 18 ~Ct~r~p~~~~v~Its~~~~~~F~s~~~vka~v~~~~~~~g~~~~~sl~~ 67 (128)
T d2gtln1 18 GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNA 67 (128)
T ss_dssp SSCCCCSEEEEEEEEEEECCTTCTTCEEEEEEEECEEECSSSEEECCEEE
T ss_pred hhhccCCCeEEEEEEeccccccccccccEEEEEEEEEEcCCceEEEeeee
Confidence 59999999999999999988888764222111333466667777777665
No 10
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=16.03 E-value=44 Score=16.71 Aligned_cols=13 Identities=54% Similarity=1.045 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhh
Q psy15313 5 LLLLTISFILAAF 17 (134)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (134)
+|||++-++++++
T Consensus 11 ~lllainflvaay 23 (29)
T d1jb0x_ 11 VLLLAINFLVAAY 23 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5777777888765
Done!