RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15313
         (134 letters)



>gnl|CDD|219042 pfam06468, Spond_N, Spondin_N.  This conserved region is found at
           the in the N-terminal half of several Spondin proteins.
           Spondins are involved in patterning axonal growth
           trajectory through either inhibiting or promoting
           adhesion of embryonic nerve cells.
          Length = 197

 Score = 83.2 bits (206), Expect = 5e-21
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 34  YRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSLQTFAELGK 93
           Y LT    WS++  PK +P  RP   W+K+ G +H+ +  L++ G  A + ++ FAE G 
Sbjct: 4   YELTFEGKWSRETHPKDYPLYRPPTHWSKVIGATHSSDYRLWEYGEYASEGVKEFAEHGS 63

Query: 94  TEDFESTLNHSQ-----VLSTFYAPPIRKGVGLTSSSFFVNAEYSK 134
           T+  ES +         V+  F AP    G G TS+ F V++ +  
Sbjct: 64  TDTLESEIEAQGEKIRTVIKAFGAPAYPNGTGATSAEFEVDSRHHL 109


>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449).  This
           presumed domain is functionally uncharacterized. This
           domain is found in eukaryotes. This domain is typically
           between 181 to 207 amino acids in length. This domain
           has two conserved sequence motifs: PIP and CEICG. The
           domain carries a zinc-finger domain of the C2H2-type.
          Length = 187

 Score = 27.2 bits (61), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 39  YTFWSQQAFPKHFPDTRPVAQWTKLYGISHT 69
            ++  ++AF KHF + R  A   K  GI +T
Sbjct: 101 TSYKGRKAFEKHFSEWRH-AYGLKCLGIPNT 130


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,533,450
Number of extensions: 544401
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 15
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)