RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15313
         (134 letters)



>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response,
           polymorphism, secreted, immune system; 1.80A {Homo
           sapiens}
          Length = 223

 Score = 85.2 bits (210), Expect = 1e-21
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 19  PVLSSAQCSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVG 78
           P+   + CS  +   Y +T    WSQ AFPK +P  RP AQW+ L G +H+ + ++++  
Sbjct: 2   PLGGESICSARAPAKYSITFTGKWSQTAFPKQYPLFRPPAQWSSLLGAAHSSDYSMWRKN 61

Query: 79  RLADKSLQTFAELGKTEDFESTLNHSQ-----VLSTFYAPPIRKGVGLTSSSFFVNAEYS 133
           +     L+ FAE G+       +  +      V   F AP +  G G TS+   V   +S
Sbjct: 62  QYVSNGLRDFAERGEAWALMKEIEAAGEALQSVHEVFSAPAVPSGTGQTSAELEVQRRHS 121


>3q13_A Spondin-1; FS-domain, membrane targeting, AXON guidance, C2-
           derivative, glycosylated, extracellular matrix, cell
           adhesi; HET: NAG BMA; 1.95A {Homo sapiens}
          Length = 258

 Score = 78.3 bits (192), Expect = 9e-19
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 26  CSPESLVFYRLTVYTFWSQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADKSL 85
           C       YRLT Y  WS++  PK +P  R    W+ + G SH++N  L++ G  A + +
Sbjct: 15  CCACGTAKYRLTFYGNWSEKTHPKDYP--RRANHWSAIIGGSHSKNYVLWEYGGYASEGV 72

Query: 86  QTFAELGKTEDFESTL-NHSQVLST-------FYAPPIRKGVGLTSSSFFVNAEYS 133
           +  AELG     E  +   S  + T       + A          S+ F V+    
Sbjct: 73  KQVAELGSPVKMEEEIRQQSDEVLTVIKAKAQWPAWQPLNVRAAPSAEFSVDRTRH 128


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 20/88 (22%)

Query: 13  ILAAFGPVLSSAQCSPESLVFYRLTV----YTFW----SQQAFPKHFPDTRPVAQWTKLY 64
           ++ A    ++    S ES  F+          F+      +A+P        +       
Sbjct: 277 LVTAV--AIAETD-SWES--FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED----- 326

Query: 65  GISHTENLT--LFQVGRLADKSLQTFAE 90
            + + E +   +  +  L  + +Q +  
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVN 354



 Score = 31.2 bits (70), Expect = 0.10
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 53/153 (34%)

Query: 20  VLS--SAQCS---PESLVFY--RLTVYTFWSQQAFPKHFPD-TRPVAQWTKLYGISHTEN 71
            LS  S +     P +  F   +L       Q+ F K  P+ T   A   +    +  E 
Sbjct: 10  TLSHGSLEHVLLVPTASFFIASQL-------QEQFNKILPEPTEGFAADDEP--TTPAEL 60

Query: 72  LTLFQ--VGRLADKSLQT-FAELGKT--EDFEST-LN----HS----------------- 104
           +  F   V  L + S    F ++      +FE+  L     H+                 
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120

Query: 105 QVLSTFYA------PPIRKGVGLTSSSFFVNAE 131
           +++  +         P  K    ++S+ F    
Sbjct: 121 ELIKNYITARIMAKRPFDKK---SNSALFRAVG 150



 Score = 27.7 bits (61), Expect = 1.5
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 14/40 (35%)

Query: 14   LAAFGPVLSSAQCSPES---LVFYR-LTVYTFWSQQAFPK 49
            LA+   V+S      ES   +VFYR +T+     Q A P+
Sbjct: 1770 LASLADVMS-----IESLVEVVFYRGMTM-----QVAVPR 1799


>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
           genomics, PSI, protein structure initiative; 2.80A
           {Escherichia coli} SCOP: d.144.1.6
          Length = 328

 Score = 26.2 bits (57), Expect = 3.4
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 29  ESLVFYRLTVYTFW-----SQQAFPKHFPDTRPVAQWTKLYGISHTENLTLFQVGRLADK 83
           E L   RL  Y  W     +  AFPK+FP       W     +  T    + Q   L + 
Sbjct: 267 EPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYW-----LRQTATF-IEQAKVLQEP 320

Query: 84  SLQ 86
            LQ
Sbjct: 321 PLQ 323


>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
           isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
          Length = 111

 Score = 25.3 bits (56), Expect = 4.5
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 95  EDFESTLNHSQVLSTFYAP 113
            +F+ T+        FYAP
Sbjct: 13  NNFDDTIAEGITFIKFYAP 31


>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
           glycoprotein, calcium-binding, muscle protein, metal
           binding protein; 2.40A {Canis lupus familiaris} PDB:
           2vaf_A
          Length = 350

 Score = 25.8 bits (56), Expect = 4.8
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 95  EDFESTLNHSQVLSTFYAPP 114
           ++F+  L    VL  +Y   
Sbjct: 19  KNFKQVLKKYDVLCLYYHES 38


>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF,
          lyase, mycobacteria, complex with CDP; HET: CDP IPE;
          2.2A {Mycobacterium smegmatis}
          Length = 165

 Score = 25.6 bits (57), Expect = 5.3
 Identities = 5/12 (41%), Positives = 5/12 (41%), Gaps = 2/12 (16%)

Query: 49 KHFPDTRPVAQW 60
            F   RP  QW
Sbjct: 64 TIFGTDRP--QW 73


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,882,414
Number of extensions: 93738
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 10
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)