RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15313
         (134 letters)



>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 157

 Score = 27.5 bits (60), Expect = 0.37
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 81  ADKSLQTFAELGKTEDFESTLNHSQVLSTFYAP 113
           +D  +    ++GK   F   LN++Q   T++ P
Sbjct: 9   SDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVP 41


>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2)
          binding protein LuxP {Vibrio harveyi [TaxId: 669]}
          Length = 338

 Score = 26.1 bits (56), Expect = 1.8
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 41 FWSQQAFPKHFPDTRPVAQ 59
          +W  Q F   FP+ R +  
Sbjct: 2  YWGYQEFLDEFPEQRNLTN 20


>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
          Length = 325

 Score = 25.1 bits (54), Expect = 3.1
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 29  ESLVFYRLTVYTFW-----SQQAFPKHFPDTRPVAQW 60
           E L   RL  Y  W     +  AFPK+FP       W
Sbjct: 264 EPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYW 300


>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
           virus [TaxId: 11099]}
          Length = 588

 Score = 24.8 bits (54), Expect = 4.1
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 79  RLADKSLQTFAELGKTEDFESTLNHSQV 106
           + A+K +Q   E GK +           
Sbjct: 370 KFANKGMQILHEAGKPQKITEGEKMKVA 397


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 450,310
Number of extensions: 17371
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 4
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)