BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15314
         (232 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
           Djvlgb, A Pranarian Vasa-Like Rna Helicase
 pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
           Djvlgb, A Pranarian Vasa-Like Rna Helicase
          Length = 253

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 102 FQIQFERLVVLDYIIRNTDRGNDNWLIKYTQPDIQSNAPSGIERENEMQDAT 153
             ++F + +VLD   R  D G +  + K  +   +SN PSGI R+  M  AT
Sbjct: 170 ISLEFCKYIVLDEADRMLDMGFEPQIRKIIE---ESNMPSGINRQTLMFSAT 218


>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
 pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
           Trna(Leucine) Complex
          Length = 967

 Score = 26.9 bits (58), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 123 NDNWLIKYTQPDIQSNAPSGIEREN---EMQDATDWNVVDKADIRLAAIDNGLAFPFKHP 179
           +D W I Y  P+ +  A   +ER     E + A    ++D  D +  A   GL  P    
Sbjct: 462 HDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWD 521

Query: 180 DSW 182
             W
Sbjct: 522 PEW 524


>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
           Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
           Domain Orientation
          Length = 810

 Score = 26.9 bits (58), Expect = 8.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 123 NDNWLIKYTQPDIQSNAPSGIEREN---EMQDATDWNVVDKADIRLAAIDNGLAFPFKHP 179
           +D W I Y  P+ +  A   +ER     E + A    ++D  D +  A   GL  P    
Sbjct: 462 HDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWD 521

Query: 180 DSW 182
             W
Sbjct: 522 PEW 524


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,298,461
Number of Sequences: 62578
Number of extensions: 311358
Number of successful extensions: 749
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)